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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061280 ID=TCONS_00061280|Name=TCONS_00061280|organism=Clytia hemisphaerica|type=transcript|length=981bp
AACACAAGTTGTTGAAGAAAACACAAACTATAAATTCTTTGAACTTGTTG
ACAAAATCACCCGATCTGTTGAAAGACTTTGCTTTAATATTCTTTGAACT
TGTTGATAGACCCACTcaatttgttgaaagtatttgcTTTAAAATTCTTT
CTACCTGTTGACAAAGTTATTCAATTTGTTGGAATGGATCAGATTTGTTT
CACTGGCGAATCAACTTGCCATTCGTTCACCGGCCATATGTTGAAAGCCA
ACATGTGTTGTAATTGTATGAAAGACATTGCAAAACACCGTAAAGAAGTC
GTCGATAGTGAATCTTTGGTCAAGgcttTAGAGTGCACACAAAAAGGTGA
ACGTATTCCGAGCTTGATTTTGGAGAAGGACGAAGTTTTCGGTCACGGCA
AATTGTACCTTGGTGGTTTCAAAGCGTGCACCAGTAGAGAATTCATTACT
CATGAACAAGTAAGAGGAGTTGTCAATACTGTTGGGAATGGTCTCTTTGG
TTTGTTCGGTCGAAAATTTCAGAGTACATACGAAGAAGTCATGAAAACAA
ACCAAGTGGACTACATCGAAGTGGAATGGGAAGACAGTCTTGCTTTCCAT
ATACCGGAACATGAAATGAAGCATGTTCTCCGTCACATTCACAGCGTGCG
GACGAATGGAGGAGCAGTTCTGGTGCATTGTGCTCAGGGTAAATCTCGTT
CCACTACAGCAGTTGTGGCCTACCTCATGTGTCTTCGCAAGATGAGTCGT
GATGATGCATTCAAATTTGTGAAAGAAAGAAGGAAAATGGCCGAACCGAA
CGCAACTTTTATGGAATTTTTACGGAAGTTCGAATCTAGTGAATTGTTAA
CAACTTTATCGAATGAATTCAGTGAGATTGGTTCCTTGGAGGTAAAGTAA
AGAAACGATCCtcaatattcatgacgtaatgtttcctGGAAATGGAAACA
CTCCGTTTTCACCAGTGGTTGCAAATTTAAA Run BLAST on NCBI protein sequence of TCONS_00061280-protein >TCONS_00061280-protein ID=TCONS_00061280-protein|Name=TCONS_00061280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MDQICFTGESTCHSFTGHMLKANMCCNCMKDIAKHRKEVVDSESLVKALE
CTQKGERIPSLILEKDEVFGHGKLYLGGFKACTSREFITHEQVRGVVNTV
GNGLFGLFGRKFQSTYEEVMKTNQVDYIEVEWEDSLAFHIPEHEMKHVLR
HIHSVRTNGGAVLVHCAQGKSRSTTAVVAYLMCLRKMSRDDAFKFVKERR
KMAEPNATFMEFLRKFESSELLTTLSNEFSEIGSLEVK Run BLAST on NCBI transcript from alignment at scaffold_355:73878..78616+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061280 ID=TCONS_00061280|Name=TCONS_00061280|organism=Clytia hemisphaerica|type=transcript|length=4739bp|location=Sequence derived from alignment at scaffold_355:73878..78616+ (Clytia hemisphaerica)
AACACAAGTTGTTGAAGAAAACACAAACTATAAATTCTTTGAACTTGTTG
ACAAAATCACCCGATCTGTTGAAAGACTTTGCTTTAATATTCTTTGAACT
TGTTGATAGACCCACTcaatttgttgaaagtatttgcTTTAAAATTCTTT
CTACCTGTTGACAAAGTTATTCAATTTGTTGGAATGGATCAGATTTGTTT
CACTGGCGAATCAACTTGCCATTCGTTCACCGGCCATATGTTGAAAGCCA
ACATGTGTTGTAATTGTATGAAAGACATTGCAAAACACCGTAAAGAAGTC
GTCGATAGTGAATCTTTGGTCAAGGTATGTTGGTTTTGTTTACTTCAATA
TattatttttgaagttttcgGCTCAACGAGCGTATTGGATATATTATATA
CCAAAAggttttcaaatattatgtAGAATGGAAATATCTTTGTTAGCAAG
GTCCAATCGAATGGAATTGGCTTATTTTGGTTCCACATGACTCGAATTAC
TTCCTTTGAAAGTTGAATTTTGAAAGTCTGAAAATCGGGAATTTGAGATT
TACGCATCAGTTTCAGCTCGTCGAACCAATAAACAAATTGGGTTGTTTGT
AAGGTTTCACCCATCAGGACTCACATTATTGCTGTTTTAATGTCATTGTA
AGCACTTTTATTGTgtcagaaaaaatttaaatagtACTATTGTATAGCCT
TTAAAGAGTACTATCAGAAAATGGTATGTTTCTTTAGATTTCTAGTTTGT
TCAATATGAAATTTAAATTCTAATCTTaagtatcttttcaacgagcacag
aCTCCTAATCTGATttatattctatcaaaagtttgaGCGTTCCTTGATGT
TTAGtatattgaattttcaatttattttttttttcaaaaggcttTAGAGT
GCACACAAAAAGGTGAACGTATTCCGAGCTTGATTTTGGAGAAGGACGAA
GTTTTCGGTCACGGCAAATTGTACCTTGGTGGTTTCAAAGCGTGCACCAG
TAGAGAATTCATTACTCATGAACAAGTAAGAGGAGTTGTCAATACTGTTG
GGAATGGTCTCTTTGGTTTGTTCGGTCGAAAATTTCAGGTGAGTTTTTTG
ACTTCAGTTTACTGTAGATGCTTTTCATATTGGGACTTGGAAAATCAACC
ATGTGGTGGTGGGACCTGAAATTTTAGGTGGACCTTGAACCCCCCATGCA
CAATATGACTTTTTATCAGGCAACTTCATTTACTATAAGGCAAAGGGTTT
GAATTTGGGTCTATATCTTGTGCgagcaaaatatttcttaaatgaTAACC
TTTTTATCCAGGGcacattttatgttttttgagaGTTACTGGATGACGCA
ATTATGTTggccggtagtatatggtagtTTTCAATTCTTTACTTAGATTC
TAGTTCTTTTCGAGGGGTAAaaactttatttgaaaataggTTTGCAACTC
CTTGTTTTATTCATGTCGGTTTtactttcaaaaattaaattttcaaactc
tTTCACTGCTTTTAAATCACATATCAACTCCCTGTACGATCTCACTCACT
ATgttacacgttttctttataagaacatccaaaatttttaaaagcctTGG
GATATTCTTAGCTTTTCGAGTTTTAAAGGCTAAAAATCTTCTGAACTTTT
TTCTTAGtttcaacattttgtgagtatttttgttcattttcctaggaaAA
TACTCTTAGGGGccaaataaaggggggggggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGggccca
caaagccttaaaatgttcttaacttgttcttatatttttgccatcgaagc
cttatgttcttataataatttgttcttaaaaaaagtgcattttttctCAC
CTGTCAGAGTACATACGAAGAAGTCATGAAAACAAACCAAGTGGACTACA
TCGAAGTGGAATGGGAAGACAGTCTTGCTTTCCATATACCGGAACATGAA
ATGAAGCATGTTCTCCGTCACATTCACAGCGTGCGGACGAATGGAGGAGC
AGTTCTGGTGCATTGTGCTCAGGTAAGGAGAAACGACACGATGACGGTTT
CTAGGCCAAACGAAACGTGGTTTTTATTCGCCAGTTAATGACATTATACT
TACTACTGGTTGTTTCAATTGACGTTAActaaaaatgggcttttccaaaa
aaaaaattgaatatagggGGTGGAGGACATAACGTTTCTgggaaatttac
cccctggacattgtgacttttgacccccccggacagcaggtctaagcccc
tggacaagcatcagttgaccccctggatattcaaaattaacctcaaacag
aacaaaattacccccaaacagagcaaattACCCCCCGGAAAAGGcaaatt
ttatagatttttcactaccgcTGGACacaatatcctccacccccatgtac
ggacattttctggacgAGCTCAATGCATTGAATCCATGGCGTTCTAAAAT
GAATTCAGAACGCCGTGATTGAATCTATCTTTTCTCCTTTTGAAAGgaga
caagacaagacaagatGACAAGGGCTTTACCCCCCCCCCGACCTTTACAT
ATCACCGGACAAAGCCATATCCGCCatatctttgatcggagttcgacttt
ttcgaatgtttggagcccgggttttcgggctctaaacatgcGATTTTTTG
ACGTCTCTTCTACATTTCGAAGCTACTGCAGTAGCGAAAAAATCGAATTG
CTTCTAATTTTCGagaatgaaaaatcccggtttttagtgaggtactCGCT
ATTGTAATGTTTACAATTACACTGCTTTTTAGTAGTGTTACCATTAGGGA
AACACTCtcaaaaaaactctgatcaaagatttttgcttgTTTGGAATTAA
GAAACTTTGTCCAAGGTAAATAAGGCTGgcttttacacgcttttttacaa
gactggtgttttttcatttcatcatggatattcttaactttttcgcgaaa
atcattctaaaatatacggtattcttaggttaagatcgaaattcaACCTA
GATTTAACATGTAATACACGCCTGGAGAATATTGAGCGTTACTGGGTATT
ATTGGCAATTTACAGgtgaaaatgctttaaaaatagcATTATTAGCTTTA
GTTGCTATATTCCataatggtgatattcttagcgtattcttaattttttg
gccattttcatcatggacattcttataaagtgtattcttaaaAACAAGCG
TGTAGTTatttaagggctacatacactacacaatatattgtcaggcaata
tattgatgatatattgctgaatgtcggcaatatattgaaaaggtgtccgc
aatatattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtgtccgcaatatattgtcagctcgatttgcaatattccaacaata
aagggggattgtttacagaaagaaaattcctttttataatagagtaccag
ttgtttgcttcgtacattacggtccgcaaaccatattgtcgaatattgtt
cgtcaatatattgtgtattCTAAGTAGCCCTTTACACTGTTCTTTTCTCC
TCAACCAATCAGGGTAAATCTCGTTTCTCCTCAACCAATCAGGGTAAATC
TCGTTTCTCCTCAACCAATCAGGGTAAATCTCGTTCCTCCTCAACCAATC
AGGGTAAATCTCGTTCCTCCTCAACCAATCAGGGTAAATCTCTTTTCTCT
TCTCAACCAATCAGGGTAAATCTCGTTCCACTACAGCAGTTGTGGCCTAN
CGTTCCTCCTCAACCAATCAGGGTAAATCTCGTTCCTCCTCAACCAATCA
GGGTAAATCTCGTTCCTCCTCAACCAATCAGGGTAAATCTCGTTCCTCCT
CAACCAATCAGGGTAAATCTCGTTCCTCCTCAACCAATCAGGGTAAATCT
CGTTCCTCCTCAACCAATCAGGGTAAATCTCGTTTCTCCTCGACCAATCA
GGGTATATCTCGTTCCTCCTCAACCAATCAGGGTAAATCTCTTTTCTCTT
CTCAACCAATCAGGGTAAATCTCTTTTCTCTTCTCAACCAATCAGGGTAA
ATCTCGTTCCACTACAGCAGTTGTGGCCTACCTCATGTGTCTTCGCAAGA
TGAGTCGTGATGATGCATTCAAATTTGTGAAAGAAAGAAGGAAAATGGCC
GAACCGAACGCAACTTTTATGGAATTTTTACGGAAGTTCGAATCTAGTGA
ATTGTTAACAACTTTATCGAATGAATTCAGTGAGATTGGTTCCTTGGAGG
TAAAGTAAAGAAACGATCCtcaatattcatgacgtaatgtttcctGGAAA
TGGAAACACTCCGTTTTCACCAGTGGTTGCAAATTTAAA Coding sequence (CDS) from alignment at scaffold_355:73878..78616+ >TCONS_00061280 ID=TCONS_00061280|Name=TCONS_00061280|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at scaffold_355:73878..78616+ (Clytia hemisphaerica)
ATGGATCAGATTTGTTTCACTGGCGAATCAACTTGCCATTCGTTCACCGG
CCATATGTTGAAAGCCAACATGTGTTGTAATTGTATGAAAGACATTGCAA
AACACCGTAAAGAAGTCGTCGATAGTGAATCTTTGGTCAAGgcttTAGAG
TGCACACAAAAAGGTGAACGTATTCCGAGCTTGATTTTGGAGAAGGACGA
AGTTTTCGGTCACGGCAAATTGTACCTTGGTGGTTTCAAAGCGTGCACCA
GTAGAGAATTCATTACTCATGAACAAGTAAGAGGAGTTGTCAATACTGTT
GGGAATGGTCTCTTTGGTTTGTTCGGTCGAAAATTTCAGAGTACATACGA
AGAAGTCATGAAAACAAACCAAGTGGACTACATCGAAGTGGAATGGGAAG
ACAGTCTTGCTTTCCATATACCGGAACATGAAATGAAGCATGTTCTCCGT
CACATTCACAGCGTGCGGACGAATGGAGGAGCAGTTCTGGTGCATTGTGC
TCAGGGTAAATCTCGTTCCACTACAGCAGTTGTGGCCTACCTCATGTGTC
TTCGCAAGATGAGTCGTGATGATGCATTCAAATTTGTGAAAGAAAGAAGG
AAAATGGCCGAACCGAACGCAACTTTTATGGAATTTTTACGGAAGTTCGA
ATCTAGTGAATTGTTAACAACTTTATCGAATGAATTCAGTGAGATTGGTT
CCTTGGAGGTAAAGTAAATGGATCAGATTTGTTTCACTGGCGAATCAACT
TGCCATTCGTTCACCGGCCATATGTTGAAAGCCAACATGTGTTGTAATTG
TATGAAAGACATTGCAAAACACCGTAAAGAAGTCGTCGATAGTGAATCTT
TGGTCAAGgcttTAGAGTGCACACAAAAAGGTGAACGTATTCCGAGCTTG
ATTTTGGAGAAGGACGAAGTTTTCGGTCACGGCAAATTGTACCTTGGTGG
TTTCAAAGCGTGCACCAGTAGAGAATTCATTACTCATGAACAAGTAAGAG
GAGTTGTCAATACTGTTGGGAATGGTCTCTTTGGTTTGTTCGGTCGAAAA
TTTCAGAGTACATACGAAGAAGTCATGAAAACAAACCAAGTGGACTACAT
CGAAGTGGAATGGGAAGACAGTCTTGCTTTCCATATACCGGAACATGAAA
TGAAGCATGTTCTCCGTCACATTCACAGCGTGCGGACGAATGGAGGAGCA
GTTCTGGTGCATTGTGCTCAGGGTAAATCTCGTTCCACTACAGCAGTTGT
GGCCTACCTCATGTGTCTTCGCAAGATGAGTCGTGATGATGCATTCAAAT
TTGTGAAAGAAAGAAGGAAAATGGCCGAACCGAACGCAACTTTTATGGAA
TTTTTACGGAAGTTCGAATCTAGTGAATTGTTAACAACTTTATCGAATGA
ATTCAGTGAGATTGGTTCCTTGGAGGTAAAGTAAATGGATCAGATTTGTT
TCACTGGCGAATCAACTTGCCATTCGTTCACCGGCCATATGTTGAAAGCC
AACATGTGTTGTAATTGTATGAAAGACATTGCAAAACACCGTAAAGAAGT
CGTCGATAGTGAATCTTTGGTCAAGgcttTAGAGTGCACACAAAAAGGTG
AACGTATTCCGAGCTTGATTTTGGAGAAGGACGAAGTTTTCGGTCACGGC
AAATTGTACCTTGGTGGTTTCAAAGCGTGCACCAGTAGAGAATTCATTAC
TCATGAACAAGTAAGAGGAGTTGTCAATACTGTTGGGAATGGTCTCTTTG
GTTTGTTCGGTCGAAAATTTCAGAGTACATACGAAGAAGTCATGAAAACA
AACCAAGTGGACTACATCGAAGTGGAATGGGAAGACAGTCTTGCTTTCCA
TATACCGGAACATGAAATGAAGCATGTTCTCCGTCACATTCACAGCGTGC
GGACGAATGGAGGAGCAGTTCTGGTGCATTGTGCTCAGGGTAAATCTCGT
TCCACTACAGCAGTTGTGGCCTACCTCATGTGTCTTCGCAAGATGAGTCG
TGATGATGCATTCAAATTTGTGAAAGAAAGAAGGAAAATGGCCGAACCGA
ACGCAACTTTTATGGAATTTTTACGGAAGTTCGAATCTAGTGAATTGTTA
ACAACTTTATCGAATGAATTCAGTGAGATTGGTTCCTTGGAGGTAAAGTA
AATGGATCAGATTTGTTTCACTGGCGAATCAACTTGCCATTCGTTCACCG
GCCATATGTTGAAAGCCAACATGTGTTGTAATTGTATGAAAGACATTGCA
AAACACCGTAAAGAAGTCGTCGATAGTGAATCTTTGGTCAAGgcttTAGA
GTGCACACAAAAAGGTGAACGTATTCCGAGCTTGATTTTGGAGAAGGACG
AAGTTTTCGGTCACGGCAAATTGTACCTTGGTGGTTTCAAAGCGTGCACC
AGTAGAGAATTCATTACTCATGAACAAGTAAGAGGAGTTGTCAATACTGT
TGGGAATGGTCTCTTTGGTTTGTTCGGTCGAAAATTTCAGAGTACATACG
AAGAAGTCATGAAAACAAACCAAGTGGACTACATCGAAGTGGAATGGGAA
GACAGTCTTGCTTTCCATATACCGGAACATGAAATGAAGCATGTTCTCCG
TCACATTCACAGCGTGCGGACGAATGGAGGAGCAGTTCTGGTGCATTGTG
CTCAGGGTAAATCTCGTTCCACTACAGCAGTTGTGGCCTACCTCATGTGT
CTTCGCAAGATGAGTCGTGATGATGCATTCAAATTTGTGAAAGAAAGAAG
GAAAATGGCCGAACCGAACGCAACTTTTATGGAATTTTTACGGAAGTTCG
AATCTAGTGAATTGTTAACAACTTTATCGAATGAATTCAGTGAGATTGGT
TCCTTGGAGGTAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061280-exon-scaffold_355-1491911889:73878..74201 | TCONS_00061280-exon-scaffold_355-1491911889:73878..74201 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1510915933:73878..74201 | TCONS_00061280-exon-scaffold_355-1510915933:73878..74201 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1575043694:73878..74201 | TCONS_00061280-exon-scaffold_355-1575043694:73878..74201 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1491911889:74768..74965 | TCONS_00061280-exon-scaffold_355-1491911889:74768..74965 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1510915933:74768..74965 | TCONS_00061280-exon-scaffold_355-1510915933:74768..74965 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1575043694:74768..74965 | TCONS_00061280-exon-scaffold_355-1575043694:74768..74965 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1491911889:76085..76249 | TCONS_00061280-exon-scaffold_355-1491911889:76085..76249 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1510915933:76085..76249 | TCONS_00061280-exon-scaffold_355-1510915933:76085..76249 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1575043694:76085..76249 | TCONS_00061280-exon-scaffold_355-1575043694:76085..76249 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1491911889:78323..78616 | TCONS_00061280-exon-scaffold_355-1491911889:78323..78616 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1510915933:78323..78616 | TCONS_00061280-exon-scaffold_355-1510915933:78323..78616 | Clytia hemisphaerica | exon |
| TCONS_00061280-exon-scaffold_355-1575043694:78323..78616 | TCONS_00061280-exon-scaffold_355-1575043694:78323..78616 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_355 | supercontig | scaffold_355:73878..78616 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0016791 | phosphatase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006470 | protein dephosphorylation |
| GO:0016311 | dephosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016311 |
dephosphorylation |
| biological_process |
GO:0006470 |
protein dephosphorylation |
| molecular_function |
GO:0016791 |
phosphatase activity |
| molecular_function |
GO:0004725 |
protein tyrosine phosphatase activity |
| molecular_function |
GO:0008138 |
protein tyrosine/serine/threonine phosphatase activity |
Blast
The following BLAST results are available for this feature:
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