TCONS_00061276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061276
Unique NameTCONS_00061276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061276 ID=TCONS_00061276|Name=TCONS_00061276|organism=Clytia hemisphaerica|type=transcript|length=259bp
NNGTAGCATTAGAGGTGAAATTCGAACCATTATCAGAGTTAATAACTTTC
GGAGCGTTATATCTGTTGAAGAAACGTTCTAAAATACGAATTAGAGCGTC
TGAATCGTAGCTTGTAGCGAGATCAAGGTACACAGCTCGCGTAGAGTAAC
AAGCAATCAATTGGCTTCAGCAAAATGTTCTTTACAGGACGTATAAAATT
CACAGGCTTCAGCTTCAGTGTCTAGACTTGTCGTAAGGTCGTCGACGTGT
AAGGAGCGN
Run BLAST on NCBI

transcript from alignment at scaffold_354:1210963..1211221

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061276 ID=TCONS_00061276|Name=TCONS_00061276|organism=Clytia hemisphaerica|type=transcript|length=259bp|location=Sequence derived from alignment at scaffold_354:1210963..1211221 (Clytia hemisphaerica)
NCGCTCCTTACACGTCGACGACCTTACGACAAGTCTAGACACTGAAGCTG
AAGCCTGTGAATTTTATACGTCCTGTAAAGAACATTTTGCTGAAGCCAAT
TGATTGCTTGTTACTCTACGCGAGCTGTGTACCTTGATCTCGCTACAAGC
TACGATTCAGACGCTCTAATTCGTATTTTAGAACGTTTCTTCAACAGATA
TAACGCTCCGAAAGTTATTAACTCTGATAATGGTTCGAATTTCACCTCTA
ATGCTACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038446XLOC_038446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061276-exon-scaffold_354-1491911889:1210963..1211221TCONS_00061276-exon-scaffold_354-1491911889:1210963..1211221Clytia hemisphaericaexon
TCONS_00061276-exon-scaffold_354-1510915933:1210963..1211221TCONS_00061276-exon-scaffold_354-1510915933:1210963..1211221Clytia hemisphaericaexon
TCONS_00061276-exon-scaffold_354-1575043694:1210963..1211221TCONS_00061276-exon-scaffold_354-1575043694:1210963..1211221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:1210963..1211221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.66613	0.199432	0.754682	1.47668	3.59542	7.81317	13.7109	14.4405	2.80837	2.08717	6.75287	3.3432	6.12198	7.70726	8.00779	16.3928	8.34295	10.9219	0	3.57281	9.15735	8.71996	1.52847	4.24231	5.72501	7.66415	1.8279	0	0.659889	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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