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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061244 ID=TCONS_00061244|Name=TCONS_00061244|organism=Clytia hemisphaerica|type=transcript|length=748bp
CCTCATTTTCTTGACATTGACATGCCCACTGACGAATTTCAAGTGTATAG
AAAACCAACAAATACAGGACTTTATGTCAACTTTGATAGTTTCGTGCCGT
GGCAACATCGCATTTCTTGGTTTCGTAGTTTAATTGTTCGTGCTACTCGA
ATTTGTTCACCTAATAGGCTACCTgctgaaatcaagaaaattaaagaaat
ggCATCTTGGAATGGTTTTCCTAAATACCTCGTCAACTCGTTAACTAAAC
GTTTTATTGAGAAATTATCGACCCCTCGTTCATCGGCTGTGAATGAAGAC
CCTGTTGAAGAATCTGTCGTAATCTGGTTTAATATGCCTTACCTTGGAAG
TAGAAGTCTTAGTAATTTTCTAGCTTGTGTTAAGAAAATTAAACGTAATT
TGAATCTTGGatcaaagaaaatcatttttaagcaaagattTAAGACCACC
AAAATCAGCTATTATTGCAATACCAAAGATCGCTCGCCTTTGCTTACCTC
TTCCAACGTTGTGTACGAGTTTAAATGTCCTGGATGTTCTTCTAAATACA
TAGGGAAAAGTGATCGTACCCTATCTGAAAGGACCAGAGAACATGCAACT
GTCAAGGGATCTGCCGTTTACCGTCACCTCACTAAGTGTGAAGGCATTAA
CTATATAGATTCCCTCTTGTTGATTGGCGTCACAGAATCGCTCACTGATG
ATGAAATACGTGATAAACGGATTAATCACGTTCGCAATAACATTCGAG Run BLAST on NCBI protein sequence of TCONS_00061244-protein >TCONS_00061244-protein ID=TCONS_00061244-protein|Name=TCONS_00061244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
PHFLDIDMPTDEFQVYRKPTNTGLYVNFDSFVPWQHRISWFRSLIVRATR
ICSPNRLPAEIKKIKEMASWNGFPKYLVNSLTKRFIEKLSTPRSSAVNED
PVEESVVIWFNMPYLGSRSLSNFLACVKKIKRNLNLGSKKIIFKQRFKTT
KISYYCNTKDRSPLLTSSNVVYEFKCPGCSSKYIGKSDRTLSERTREHAT
VKGSAVYRHLTKCEGINYIDSLLLIGVTESLTDDEIRDKRINHVRNNIR Run BLAST on NCBI transcript from alignment at scaffold_354:400065..400812 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061244 ID=TCONS_00061244|Name=TCONS_00061244|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at scaffold_354:400065..400812 (Clytia hemisphaerica)
CTCGAATGTTATTGCGAACGTGATTAATCCGTTTATCACGTATTTCATCA
TCAGTGAGCGATTCTGTGACGCCAATCAACAAGAGGGAATCTATATAGTT
AATGCCTTCACACTTAGTGAGGTGACGGTAAACGGCAGATCCCTTGACAG
TTGCATGTTCTCTGGTCCTTTCAGATAGGGTACGATCACTTTTCCCTATG
TATTTAGAAGAACATCCAGGACATTTAAACTCGTACACAACGTTGGAAGA
GGTAAGCAAAGGCGAGCGATCTTTGGTATTGCAATAATAGCTGATTTTGG
TGGTCTTAaatctttgcttaaaaatgattttctttgatCCAAGATTCAAA
TTACGTTTAATTTTCTTAACACAAGCTAGAAAATTACTAAGACTTCTACT
TCCAAGGTAAGGCATATTAAACCAGATTACGACAGATTCTTCAACAGGGT
CTTCATTCACAGCCGATGAACGAGGGGTCGATAATTTCTCAATAAAACGT
TTAGTTAACGAGTTGACGAGGTATTTAGGAAAACCATTCCAAGATGccat
ttctttaattttcttgatttcagcAGGTAGCCTATTAGGTGAACAAATTC
GAGTAGCACGAACAATTAAACTACGAAACCAAGAAATGCGATGTTGCCAC
GGCACGAAACTATCAAAGTTGACATAAAGTCCTGTATTTGTTGGTTTTCT
ATACACTTGAAATTCGTCAGTGGGCATGTCAATGTCAAGAAAATGAGG Coding sequence (CDS) from alignment at scaffold_354:400065..400812 >TCONS_00061244 ID=TCONS_00061244|Name=TCONS_00061244|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_354:400065..400812 (Clytia hemisphaerica)
TCGAATGTTATTGCGAACGTGATTAATCCGTTTATCACGTATTTCATCAT
CAGTGAGCGATTCTGTGACGCCAATCAACAAGAGGGAATCTATATAGTTA
ATGCCTTCACACTTAGTGAGGTGACGGTAAACGGCAGATCCCTTGACAGT
TGCATGTTCTCTGGTCCTTTCAGATAGGGTACGATCACTTTTCCCTATGT
ATTTAGAAGAACATCCAGGACATTTAAACTCGTACACAACGTTGGAAGAG
GTAAGCAAAGGCGAGCGATCTTTGGTATTGCAATAATAGCTGATTTTGGT
GGTCTTAaatctttgcttaaaaatgattttctttgatCCAAGATTCAAAT
TACGTTTAATTTTCTTAACACAAGCTAGAAAATTACTAAGACTTCTACTT
CCAAGGTAAGGCATATTAAACCAGATTACGACAGATTCTTCAACAGGGTC
TTCATTCACAGCCGATGAACGAGGGGTCGATAATTTCTCAATAAAACGTT
TAGTTAACGAGTTGACGAGGTATTTAGGAAAACCATTCCAAGATGccatt
tctttaattttcttgatttcagcAGGTAGCCTATTAGGTGAACAAATTCG
AGTAGCACGAACAATTAAACTACGAAACCAAGAAATGCGATGTTGCCACG
GCACGAAACTATCAAAGTTGACATAAAGTCCTGTATTTGTTGGTTTTCTA
TACACTTGAAATTCGTCAGTGGGCATGTCAATGTCAAGAAAATGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061244-exon-scaffold_354-1491911889:400065..400812 | TCONS_00061244-exon-scaffold_354-1491911889:400065..400812 | Clytia hemisphaerica | exon |
| TCONS_00061244-exon-scaffold_354-1510915933:400065..400812 | TCONS_00061244-exon-scaffold_354-1510915933:400065..400812 | Clytia hemisphaerica | exon |
| TCONS_00061244-exon-scaffold_354-1575043694:400065..400812 | TCONS_00061244-exon-scaffold_354-1575043694:400065..400812 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:400065..400812 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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