TCONS_00061242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061242
Unique NameTCONS_00061242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061242 ID=TCONS_00061242|Name=TCONS_00061242|organism=Clytia hemisphaerica|type=transcript|length=240bp
ggGGAAGCACTGCAAAACAGTGCTTTTTGAGTAGATTTGGTGACTCTtgg
gaagaaagaagaagaatactGCTTGGAACCAACATCAAATGTGTTGGAAT
AGACTTCTATCATACATTGGAATAACAGACAATACTTTTTGAGCATAATG
AATGTGTGAAActtgcttttttgtttacaaacttcACTCAAGTAGTTTTG
TCGATTTTGCTGCTTTCGAAAGCTGTTGATGGAGACTACT
Run BLAST on NCBI

transcript from alignment at scaffold_354:315715..315954

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061242 ID=TCONS_00061242|Name=TCONS_00061242|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at scaffold_354:315715..315954 (Clytia hemisphaerica)
AGTAGTCTCCATCAACAGCTTTCGAAAGCAGCAAAATCGACAAAACTACT
TGAGTgaagtttgtaaacaaaaaagcaagTTTCACACATTCATTATGCTC
AAAAAGTATTGTCTGTTATTCCAATGTATGATAGAAGTCTATTCCAACAC
ATTTGATGTTGGTTCCAAGCagtattcttcttctttcttcccaAGAGTCA
CCAAATCTACTCAAAAAGCACTGTTTTGCAGTGCTTCCcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038412XLOC_038412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061242-exon-scaffold_354-1491911889:315715..315954TCONS_00061242-exon-scaffold_354-1491911889:315715..315954Clytia hemisphaericaexon
TCONS_00061242-exon-scaffold_354-1510915933:315715..315954TCONS_00061242-exon-scaffold_354-1510915933:315715..315954Clytia hemisphaericaexon
TCONS_00061242-exon-scaffold_354-1575043694:315715..315954TCONS_00061242-exon-scaffold_354-1575043694:315715..315954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:315715..315954 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.450675	1.63195	4.32524	1.70573	0	2.9094	0	6.13555	5.97865	6.92397	1.29871	4.80463	0.714063	0	0	0	0	2.0738	3.36133	0	0	0	0.141635	0	0.29049	3.84096	2.47005	2.34971	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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