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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061239 ID=TCONS_00061239|Name=TCONS_00061239|organism=Clytia hemisphaerica|type=transcript|length=2162bp
CCAACATCTTCCATCAAGTTATTAGTTTCATTTCCGTTAAACTCGGTACG
TTCTTGCCATTCTTGCATACTGTTGGTTTCACACGAATACATTTGTTCAA
GTTTAGACGTGTTCTGCTCTCGAATATCTAATTTCCATTGACTTTGTTGT
GACAATGTTGTTGAtgaaaaatctctttgacaatCTCCTTGAGAAACTAT
CGAAGGGTTTGCATGTAACCACCCACTTGACTGAATGATATCAAGAGCCT
GGGAAGTAGCGGAATCGAGATCTTTTTGGTTAACTTCAACCAGGTCCTCG
TCTTTATCACTTGCTTCAATTGAGAAGTCGACATCTTCCTCCATTGGATG
TTCTTCGTTATCCTTGTTTCCGTTGTGTAGgttatcttctttttctttta
aaccaACATGCATTTCCTTGATATTGTTAATGAAAAGTGAATAGCTGTCA
AAATTTGTATTCAGAAAAGAGTCTTCCCATGATATACCATTGTACAGATC
AGTGAATTCAACGAACGGTTTGAACAACAAAAGCATGCAAATGTGGAACT
TCTCTGGATTACTTTCTTCACTTGGTGGCAAAAGTGATAACGAAGGAACA
ATTGAATCAGTTCTTGTCACTTGTACATGTGTCTCAGATTGCGGATGAGA
AGGTGCAAAAAGATGTCTTGGTTGGGGTTTCCTTCCTCGTCTCTTTGGGC
CATGATTTTCCAGCTTTCTTCGTTCATTAGATGATAAAGTGGTCTTATAA
ACTTTGGAGAAATATTCATAAAGCGGCATACATGACAATTCATCCCCTCT
ATTTAGATAATCAACCATTTGATTCACTAAGACCAAACCATTATTACCGC
TCAGAATCGAATAGCTTGCAGTTTCATTTCCCTCATCATCAACGACATCA
GTCAGAATGTCATCATCTAGTGCATCATACTtcttcatttcatcatggat
ccAGGCCAAACAAGAATGTAGATTGAGGCGGATGAACGAGTGCGATGTTT
TCTTATCTGTGTGACCAAGGAGAAAATGAGAAACATGCGATCCTGATATC
TCCGTTTCGGTCGTAATTCTGTTGAGACATTTTGTGATCAATGCTTTTGA
CCTTTCAACAACGCTCGAGTTGGTGTTTGAAGCTTGTACAACCTTTTTCG
AGGCGGCAATCAGAGGAAGCATTTGGTGGGTAGAAAGTTGGGATTTTGTG
GCGTAGTCTGTCATGTAGAACACACATGATTTTCCATCTTTTCCGCTGGG
TATGAATTTTATATCATGGTTGCTTCTTATTGACGTCATGAGGATAGGGT
TAAAGTTGTTGATGATGGTATTTGTTCTTTTCAGTAGTATTTCATCTTCG
GTTATAACTGTCTCGGGTTGCAGTTCGCGTGGAAAACCGAATCTACACTC
ACGAGCTTTCCTATATTTGTAACAGGTAAACGAATGTCTGTGAGTGTTAG
CCACTTTAACCAATTTGTTAACGTCGTCagcaagttctttttcaaagttG
TCAGAAGATGGATCTGTTGGACGCTTCGTCGATATTTCTGATACATCAAC
ATCTGGTATTGTTTCAACATCATTGCCAATATAGCCCTGTTTGATTGTGG
CTTCTAAGTATTTGATAAGGTTTTCTTTGAATGTTTCACTTTTAAGATCT
GCTTCAAGATCGGAAATGGCTCTGAAACCCTTTAACCACACAAGCATATG
AATGTGTAAAGTACCAGTGCCTTGTTCTTCAATACACCCATAAAATGCTG
AAGGATGCCCAAAGACCCCTCCTGCAGACTGATTATAGCCAAGAAGGTGA
GTTGTAAAAGAGTCAATCATTGAGTTGAAAAATCGTGCAGCTGCTACTGG
ATCTTTTGCCACGATCTTTGCTCGATCAACTGCTGCTGGTAAATCAGAAA
GGGTTAGACTCTCAAGATTGATATTGTGACCAGCGAAACGTAGAAAGATA
GGAGAGTGTACCACTGCTGGACTAATAGTTATCCATAAAGGAGGGGTACC
AAATTTAACCATGAGACCGAAGATTTCTCGTCTATATCCTTGTTTGTAAT
ACGGTGATCCTCTTATATTTGCACCAGCTGATGTCAGAGTTCTCATTAGC
GTCCGGAGGTTTGGGTCAGTTATCGAGTTTGTTTTCCCCACTGATTGCAC
GACTTGAACCAA Run BLAST on NCBI protein sequence of TCONS_00061239-protein >TCONS_00061239-protein ID=TCONS_00061239-protein|Name=TCONS_00061239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=720bp
LVQVVQSVGKTNSITDPNLRTLMRTLTSAGANIRGSPYYKQGYRREIFGL
MVKFGTPPLWITISPAVVHSPIFLRFAGHNINLESLTLSDLPAAVDRAKI
VAKDPVAAARFFNSMIDSFTTHLLGYNQSAGGVFGHPSAFYGCIEEQGTG
TLHIHMLVWLKGFRAISDLEADLKSETFKENLIKYLEATIKQGYIGNDVE
TIPDVDVSEISTKRPTDPSSDNFEKELADDVNKLVKVANTHRHSFTCYKY
RKARECRFGFPRELQPETVITEDEILLKRTNTIINNFNPILMTSIRSNHD
IKFIPSGKDGKSCVFYMTDYATKSQLSTHQMLPLIAASKKVVQASNTNSS
VVERSKALITKCLNRITTETEISGSHVSHFLLGHTDKKTSHSFIRLNLHS
CLAWIHDEMKKYDALDDDILTDVVDDEGNETASYSILSGNNGLVLVNQMV
DYLNRGDELSCMPLYEYFSKVYKTTLSSNERRKLENHGPKRRGRKPQPRH
LFAPSHPQSETHVQVTRTDSIVPSLSLLPPSEESNPEKFHICMLLLFKPF
VEFTDLYNGISWEDSFLNTNFDSYSLFINNIKEMHVGLKEKEDNLHNGNK
DNEEHPMEEDVDFSIEASDKDEDLVEVNQKDLDSATSQALDIIQSSGWLH
ANPSIVSQGDCQRDFSSTTLSQQSQWKLDIREQNTSKLEQMYSCETNSMQ
EWQERTEFNGNETNNLMEDV Run BLAST on NCBI transcript from alignment at scaffold_354:272235..274396 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061239 ID=TCONS_00061239|Name=TCONS_00061239|organism=Clytia hemisphaerica|type=transcript|length=2162bp|location=Sequence derived from alignment at scaffold_354:272235..274396 (Clytia hemisphaerica)
TTGGTTCAAGTCGTGCAATCAGTGGGGAAAACAAACTCGATAACTGACCC
AAACCTCCGGACGCTAATGAGAACTCTGACATCAGCTGGTGCAAATATAA
GAGGATCACCGTATTACAAACAAGGATATAGACGAGAAATCTTCGGTCTC
ATGGTTAAATTTGGTACCCCTCCTTTATGGATAACTATTAGTCCAGCAGT
GGTACACTCTCCTATCTTTCTACGTTTCGCTGGTCACAATATCAATCTTG
AGAGTCTAACCCTTTCTGATTTACCAGCAGCAGTTGATCGAGCAAAGATC
GTGGCAAAAGATCCAGTAGCAGCTGCACGATTTTTCAACTCAATGATTGA
CTCTTTTACAACTCACCTTCTTGGCTATAATCAGTCTGCAGGAGGGGTCT
TTGGGCATCCTTCAGCATTTTATGGGTGTATTGAAGAACAAGGCACTGGT
ACTTTACACATTCATATGCTTGTGTGGTTAAAGGGTTTCAGAGCCATTTC
CGATCTTGAAGCAGATCTTAAAAGTGAAACATTCAAAGAAAACCTTATCA
AATACTTAGAAGCCACAATCAAACAGGGCTATATTGGCAATGATGTTGAA
ACAATACCAGATGTTGATGTATCAGAAATATCGACGAAGCGTCCAACAGA
TCCATCTTCTGACaactttgaaaaagaacttgctGACGACGTTAACAAAT
TGGTTAAAGTGGCTAACACTCACAGACATTCGTTTACCTGTTACAAATAT
AGGAAAGCTCGTGAGTGTAGATTCGGTTTTCCACGCGAACTGCAACCCGA
GACAGTTATAACCGAAGATGAAATACTACTGAAAAGAACAAATACCATCA
TCAACAACTTTAACCCTATCCTCATGACGTCAATAAGAAGCAACCATGAT
ATAAAATTCATACCCAGCGGAAAAGATGGAAAATCATGTGTGTTCTACAT
GACAGACTACGCCACAAAATCCCAACTTTCTACCCACCAAATGCTTCCTC
TGATTGCCGCCTCGAAAAAGGTTGTACAAGCTTCAAACACCAACTCGAGC
GTTGTTGAAAGGTCAAAAGCATTGATCACAAAATGTCTCAACAGAATTAC
GACCGAAACGGAGATATCAGGATCGCATGTTTCTCATTTTCTCCTTGGTC
ACACAGATAAGAAAACATCGCACTCGTTCATCCGCCTCAATCTACATTCT
TGTTTGGCCTggatccatgatgaaatgaagaAGTATGATGCACTAGATGA
TGACATTCTGACTGATGTCGTTGATGATGAGGGAAATGAAACTGCAAGCT
ATTCGATTCTGAGCGGTAATAATGGTTTGGTCTTAGTGAATCAAATGGTT
GATTATCTAAATAGAGGGGATGAATTGTCATGTATGCCGCTTTATGAATA
TTTCTCCAAAGTTTATAAGACCACTTTATCATCTAATGAACGAAGAAAGC
TGGAAAATCATGGCCCAAAGAGACGAGGAAGGAAACCCCAACCAAGACAT
CTTTTTGCACCTTCTCATCCGCAATCTGAGACACATGTACAAGTGACAAG
AACTGATTCAATTGTTCCTTCGTTATCACTTTTGCCACCAAGTGAAGAAA
GTAATCCAGAGAAGTTCCACATTTGCATGCTTTTGTTGTTCAAACCGTTC
GTTGAATTCACTGATCTGTACAATGGTATATCATGGGAAGACTCTTTTCT
GAATACAAATTTTGACAGCTATTCACTTTTCATTAACAATATCAAGGAAA
TGCATGTtggtttaaaagaaaaagaagataacCTACACAACGGAAACAAG
GATAACGAAGAACATCCAATGGAGGAAGATGTCGACTTCTCAATTGAAGC
AAGTGATAAAGACGAGGACCTGGTTGAAGTTAACCAAAAAGATCTCGATT
CCGCTACTTCCCAGGCTCTTGATATCATTCAGTCAAGTGGGTGGTTACAT
GCAAACCCTTCGATAGTTTCTCAAGGAGattgtcaaagagatttttcaTC
AACAACATTGTCACAACAAAGTCAATGGAAATTAGATATTCGAGAGCAGA
ACACGTCTAAACTTGAACAAATGTATTCGTGTGAAACCAACAGTATGCAA
GAATGGCAAGAACGTACCGAGTTTAACGGAAATGAAACTAATAACTTGAT
GGAAGATGTTGG Coding sequence (CDS) from alignment at scaffold_354:272235..274396 >TCONS_00061239 ID=TCONS_00061239|Name=TCONS_00061239|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_354:272235..274396 (Clytia hemisphaerica)
TTGGTTCAAGTCGTGCAATCAGTGGGGAAAACAAACTCGATAACTGACCC
AAACCTCCGGACGCTAATGAGAACTCTGACATCAGCTGGTGCAAATATAA
GAGGATCACCGTATTACAAACAAGGATATAGACGAGAAATCTTCGGTCTC
ATGGTTAAATTTGGTACCCCTCCTTTATGGATAACTATTAGTCCAGCAGT
GGTACACTCTCCTATCTTTCTACGTTTCGCTGGTCACAATATCAATCTTG
AGAGTCTAACCCTTTCTGATTTACCAGCAGCAGTTGATCGAGCAAAGATC
GTGGCAAAAGATCCAGTAGCAGCTGCACGATTTTTCAACTCAATGATTGA
CTCTTTTACAACTCACCTTCTTGGCTATAATCAGTCTGCAGGAGGGGTCT
TTGGGCATCCTTCAGCATTTTATGGGTGTATTGAAGAACAAGGCACTGGT
ACTTTACACATTCATATGCTTGTGTGGTTAAAGGGTTTCAGAGCCATTTC
CGATCTTGAAGCAGATCTTAAAAGTGAAACATTCAAAGAAAACCTTATCA
AATACTTAGAAGCCACAATCAAACAGGGCTATATTGGCAATGATGTTGAA
ACAATACCAGATGTTGATGTATCAGAAATATCGACGAAGCGTCCAACAGA
TCCATCTTCTGACaactttgaaaaagaacttgctGACGACGTTAACAAAT
TGGTTAAAGTGGCTAACACTCACAGACATTCGTTTACCTGTTACAAATAT
AGGAAAGCTCGTGAGTGTAGATTCGGTTTTCCACGCGAACTGCAACCCGA
GACAGTTATAACCGAAGATGAAATACTACTGAAAAGAACAAATACCATCA
TCAACAACTTTAACCCTATCCTCATGACGTCAATAAGAAGCAACCATGAT
ATAAAATTCATACCCAGCGGAAAAGATGGAAAATCATGTGTGTTCTACAT
GACAGACTACGCCACAAAATCCCAACTTTCTACCCACCAAATGCTTCCTC
TGATTGCCGCCTCGAAAAAGGTTGTACAAGCTTCAAACACCAACTCGAGC
GTTGTTGAAAGGTCAAAAGCATTGATCACAAAATGTCTCAACAGAATTAC
GACCGAAACGGAGATATCAGGATCGCATGTTTCTCATTTTCTCCTTGGTC
ACACAGATAAGAAAACATCGCACTCGTTCATCCGCCTCAATCTACATTCT
TGTTTGGCCTggatccatgatgaaatgaagaAGTATGATGCACTAGATGA
TGACATTCTGACTGATGTCGTTGATGATGAGGGAAATGAAACTGCAAGCT
ATTCGATTCTGAGCGGTAATAATGGTTTGGTCTTAGTGAATCAAATGGTT
GATTATCTAAATAGAGGGGATGAATTGTCATGTATGCCGCTTTATGAATA
TTTCTCCAAAGTTTATAAGACCACTTTATCATCTAATGAACGAAGAAAGC
TGGAAAATCATGGCCCAAAGAGACGAGGAAGGAAACCCCAACCAAGACAT
CTTTTTGCACCTTCTCATCCGCAATCTGAGACACATGTACAAGTGACAAG
AACTGATTCAATTGTTCCTTCGTTATCACTTTTGCCACCAAGTGAAGAAA
GTAATCCAGAGAAGTTCCACATTTGCATGCTTTTGTTGTTCAAACCGTTC
GTTGAATTCACTGATCTGTACAATGGTATATCATGGGAAGACTCTTTTCT
GAATACAAATTTTGACAGCTATTCACTTTTCATTAACAATATCAAGGAAA
TGCATGTtggtttaaaagaaaaagaagataacCTACACAACGGAAACAAG
GATAACGAAGAACATCCAATGGAGGAAGATGTCGACTTCTCAATTGAAGC
AAGTGATAAAGACGAGGACCTGGTTGAAGTTAACCAAAAAGATCTCGATT
CCGCTACTTCCCAGGCTCTTGATATCATTCAGTCAAGTGGGTGGTTACAT
GCAAACCCTTCGATAGTTTCTCAAGGAGattgtcaaagagatttttcaTC
AACAACATTGTCACAACAAAGTCAATGGAAATTAGATATTCGAGAGCAGA
ACACGTCTAAACTTGAACAAATGTATTCGTGTGAAACCAACAGTATGCAA
GAATGGCAAGAACGTACCGAGTTTAACGGAAATGAAACTAATAACTTGAT
GGAAGATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061239-exon-scaffold_354-1491911889:272235..274396 | TCONS_00061239-exon-scaffold_354-1491911889:272235..274396 | Clytia hemisphaerica | exon |
| TCONS_00061239-exon-scaffold_354-1510915933:272235..274396 | TCONS_00061239-exon-scaffold_354-1510915933:272235..274396 | Clytia hemisphaerica | exon |
| TCONS_00061239-exon-scaffold_354-1575043694:272235..274396 | TCONS_00061239-exon-scaffold_354-1575043694:272235..274396 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_354 | supercontig | scaffold_354:272235..274396 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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