TCONS_00061237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061237
Unique NameTCONS_00061237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061237 ID=TCONS_00061237|Name=TCONS_00061237|organism=Clytia hemisphaerica|type=transcript|length=337bp
ACACGGCGGCAAAAAATGAGTTATTTTCTCCCACTGGCCTCAAATTAGCT
TATTAGTGACTCTTAGGTTGTCAAACCTATAGATATTCTTAAAGGAtatg
attttgcaaaaaaaattcaaatttcaaaaaattttcaaaactcgtGCCCA
GTCCCTTTTTAGCAGTTGttctaaaaaatctgaatttaaaAGTCAGAATT
AAACCTTGAATCTACTTCAGTTACAAAGAGCATAAAATTCTGCGTcagaa
aatggggtcactttttatTCTAGGATAATCTGGTCACGAGATATcgtaat
ttaaatttttttggagaCTGGGACGAGGTTGCTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_354:239129..239465

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061237 ID=TCONS_00061237|Name=TCONS_00061237|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at scaffold_354:239129..239465 (Clytia hemisphaerica)
ATTTAGCAACCTCGTCCCAGtctccaaaaaaatttaaattacgATATCTC
GTGACCAGATTATCCTAGAataaaaagtgaccccattttctgACGCAGAA
TTTTATGCTCTTTGTAACTGAAGTAGATTCAAGGTTTAATTCTGACTttt
aaattcagattttttagaaCAACTGCTAAAAAGGGACTGGGCacgagttt
tgaaaattttttgaaatttgaattttttttgcaaaatcataTCCTTTAAG
AATATCTATAGGTTTGACAACCTAAGAGTCACTAATAAGCTAATTTGAGG
CCAGTGGGAGAAAATAACTCATTTTTTGCCGCCGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038407XLOC_038407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061237-exon-scaffold_354-1491911889:239129..239465TCONS_00061237-exon-scaffold_354-1491911889:239129..239465Clytia hemisphaericaexon
TCONS_00061237-exon-scaffold_354-1510915933:239129..239465TCONS_00061237-exon-scaffold_354-1510915933:239129..239465Clytia hemisphaericaexon
TCONS_00061237-exon-scaffold_354-1575043694:239129..239465TCONS_00061237-exon-scaffold_354-1575043694:239129..239465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:239129..239465 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.270281	0	0.640368	0	0	0	0	0.818214	0	0.280807	0.834835	0	0	0	0.0540263	0	0	0.399636	0	0.718371	1.90659	0.604913	1.31642	0	0	3.90007	4.59433	0.934792	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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