TCONS_00061234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061234
Unique NameTCONS_00061234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061234 ID=TCONS_00061234|Name=TCONS_00061234|organism=Clytia hemisphaerica|type=transcript|length=399bp
tgattgtCCCTTTAAGTCACTTTGCTAAAGTTTTTATCGAATTTTCTTTT
GCGTCTCTGGTTGAACGCTGAAATAGTATTCCAGTTTGGTTTAAACAGAA
TCACGTATAACTTGTACAAGTAAATCAACGCGAAGTGAATAGCATTCAAA
CTCAATATACCAATTGCAAAAACGTGATTTCGGGTAGTTGCCATGCGCTG
TAGAAAGTAAATGGTAGCTGAAGCTGACAAGACCAAGATTGAAATAAATG
ATGAATAAATAACATGTGTGGTTTCTTTGAAATGCGATGGTAGTTTTCTT
GAACGTAAAGCTTGGACTCCATTTGCTAGGATCAACAAAAGCACAAAGCA
GAGATGCACAATGATATTGAGGTTGTTATTGCATGTTAGTTCTTTAATA
Run BLAST on NCBI

protein sequence of TCONS_00061234-protein

>TCONS_00061234-protein ID=TCONS_00061234-protein|Name=TCONS_00061234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
IKELTCNNNLNIIVHLCFVLLLILANGVQALRSRKLPSHFKETTHVIYSS
FISILVLSASATIYFLQRMATTRNHVFAIGILSLNAIHFALIYLYKLYVI
LFKPNWNTISAFNQRRKRKFDKNFSKVT
Run BLAST on NCBI

transcript from alignment at scaffold_354:119249..119647

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061234 ID=TCONS_00061234|Name=TCONS_00061234|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at scaffold_354:119249..119647 (Clytia hemisphaerica)
TATTAAAGAACTAACATGCAATAACAACCTCAATATCATTGTGCATCTCT
GCTTTGTGCTTTTGTTGATCCTAGCAAATGGAGTCCAAGCTTTACGTTCA
AGAAAACTACCATCGCATTTCAAAGAAACCACACATGTTATTTATTCATC
ATTTATTTCAATCTTGGTCTTGTCAGCTTCAGCTACCATTTACTTTCTAC
AGCGCATGGCAACTACCCGAAATCACGTTTTTGCAATTGGTATATTGAGT
TTGAATGCTATTCACTTCGCGTTGATTTACTTGTACAAGTTATACGTGAT
TCTGTTTAAACCAAACTGGAATACTATTTCAGCGTTCAACCAGAGACGCA
AAAGAAAATTCGATAAAAACTTTAGCAAAGTGACTTAAAGGGacaatca

Coding sequence (CDS) from alignment at scaffold_354:119249..119647

>TCONS_00061234 ID=TCONS_00061234|Name=TCONS_00061234|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_354:119249..119647 (Clytia hemisphaerica)
ATTAAAGAACTAACATGCAATAACAACCTCAATATCATTGTGCATCTCTG
CTTTGTGCTTTTGTTGATCCTAGCAAATGGAGTCCAAGCTTTACGTTCAA
GAAAACTACCATCGCATTTCAAAGAAACCACACATGTTATTTATTCATCA
TTTATTTCAATCTTGGTCTTGTCAGCTTCAGCTACCATTTACTTTCTACA
GCGCATGGCAACTACCCGAAATCACGTTTTTGCAATTGGTATATTGAGTT
TGAATGCTATTCACTTCGCGTTGATTTACTTGTACAAGTTATACGTGATT
CTGTTTAAACCAAACTGGAATACTATTTCAGCGTTCAACCAGAGACGCAA
AAGAAAATTCGATAAAAACTTTAGCAAAGTGACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038404XLOC_038404Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061234-proteinTCONS_00061234-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061234-exon-scaffold_354-1491911889:119249..119647TCONS_00061234-exon-scaffold_354-1491911889:119249..119647Clytia hemisphaericaexon
TCONS_00061234-exon-scaffold_354-1510915933:119249..119647TCONS_00061234-exon-scaffold_354-1510915933:119249..119647Clytia hemisphaericaexon
TCONS_00061234-exon-scaffold_354-1575043694:119249..119647TCONS_00061234-exon-scaffold_354-1575043694:119249..119647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:119249..119647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.182086	0	0	0.251809	0	0	0	0	0	0	0	0.49674	0.773803	0	0	0.280347	0	2.38191	1.86938	0.541609	0	0.214095	0	0	0.357844	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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