TCONS_00061203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061203
Unique NameTCONS_00061203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061203 ID=TCONS_00061203|Name=TCONS_00061203|organism=Clytia hemisphaerica|type=transcript|length=1882bp
CAATTTCATGTTATACCAAGGAAGCCCCGGTCCACCGACCGGGTGAAAAT
CTTTTTGTCGTCACCTGAccgcatttttttcaaattttttcaacattttc
ccATTTCATCCAGTTTCATCATTGTCTACACTCGAGTGACAAATTTTCGA
CAGTCTTCATTTTGCACTGCGCGGTGCTTTTACTGATTTCGCTTTTTTAG
ATTACGTAATTCTTTTTCAGAATgaagaaataataataaatgataataaa
gtcaaaataaaaaaaatgacattAACTATGGAATGGTTTAAAACTTTGAA
ACCAGCTCACAAGACCCTTATTGTAACTGGTGCTGGTATAAGTGTAGCTT
TACTCAGTTACTCAATTTACAGACATAAAAACTCTCGAAAAGTAGATGAG
GATGATGTTAGAGATGAGGGTTCAACAAGTCCTGTTCCAGTCCGTGAAGC
TAGTTCCTGGTTAAAAGATAATATTGGATGTGACACTCCCGAGGATGTTG
GTGTTCGTAGCATGCATGTAATTGAAACTCCCAAAGATGAAGTAAATCCT
GAAGGATGGGTGACGCCTACACCCTCTAATGGAAATCTAGTGTGCCGTGA
AGTTCAAAATACAGAATCTGAAAGTTTTGAGGGCACACCTAGAGAACTTT
CACCACGTCAACCAGTTGAAAGTGAATCTACCATGGACGAAGATGTAGAA
GTGGACCGCAAGGCATCAAGAAAGATTTTGATCTTGGGACTAGAGCAGGC
AGGGAAGTCAGCTCTCTTATCTCAACTTTCCAAAGAAGGGACAGACTGTT
CAAACTATTTACCAACTAAAGGCTTCAATGTTGTTTGCATTTCCTTTGAC
ACAATCGATTTGAACATTTGGGAAGTTGGTGGTGCACTAGAATACAGATC
GTACTGGAAGAACTTCAGCCAATCAACAGATCTCATACTATTTGCTGTTG
ATGCAAGTGACCGAACTAAATTTCCAGCTGCCAAGTTATATTTCAACGAC
ATCATTGGTGAAGCTAATGAGAACAGTGACTTTCACATCATTGCTACGAA
ATCTGATCTTGAAGGAGCTGCAAAGGCTGATGAAATCCAACATGCACTGG
GTTTGGATGGTATGAAGATACATGTGGTTGAGGTAGCTGTACGAACTGGC
GGTGCTTCACAGAATATTGGGTTAGAAGAAGTACAGAAACGCTGTTTAAA
TGAAGAGGATGATGTCCATCTGTAATTAAAATGCTTGGTTTGATGGTTTT
AGTGGATACAATTTGTTTTTGTGGTTAGTTTGAATCATGATGGTATTGAG
ATTACTTAAAAGGGAACtatttttgtgcattttgaTGTCTCAAATAGAAA
CAAACCTAGTTTCATCAAATAGATTTTCAGATTTCactaaaaatttctaa
aatcaaaaagaattaGCAAAAGAGGTTTCAACCACAAGAAATAGCTGGAT
AAGGAAATTGATAACCTTGCTTCAAGTATTCAAGGCCAATAAAATTCACC
ATGTAAATTGTAAAATCTTTGTATGTAATCTGTGATTCCTTTCACTTGAG
ATGACCTTTCAGCCAGTTTTGACATTTGAATATGTGTAGACACTGAGACA
CAGTAAGTTTATTGGTTGAAAGCAATAAAAGAGACGTTTTTTAAGATGTA
CAGATTTTACAGgatttttaattagattttaatttaatgACCTGCTTAGA
AAGATAATATCCTTACTTTTCATATCATTAGGGTTCAAGttgttatttat
ttcttttcttacATACGTAAAGACTTTGTAAAAAGAAAATGGATGGGTTT
TATGGTCCAGAAATTGTAATTATTTTCAGATCAAATTTTAAATATGAAAT
ATTATAACCAGAGGTATTATTCCAAAGAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00061203-protein

>TCONS_00061203-protein ID=TCONS_00061203-protein|Name=TCONS_00061203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MTLTMEWFKTLKPAHKTLIVTGAGISVALLSYSIYRHKNSRKVDEDDVRD
EGSTSPVPVREASSWLKDNIGCDTPEDVGVRSMHVIETPKDEVNPEGWVT
PTPSNGNLVCREVQNTESESFEGTPRELSPRQPVESESTMDEDVEVDRKA
SRKILILGLEQAGKSALLSQLSKEGTDCSNYLPTKGFNVVCISFDTIDLN
IWEVGGALEYRSYWKNFSQSTDLILFAVDASDRTKFPAAKLYFNDIIGEA
NENSDFHIIATKSDLEGAAKADEIQHALGLDGMKIHVVEVAVRTGGASQN
IGLEEVQKRCLNEEDDVHL
Run BLAST on NCBI

transcript from alignment at scaffold_354:834150..837154-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061203 ID=TCONS_00061203|Name=TCONS_00061203|organism=Clytia hemisphaerica|type=transcript|length=3005bp|location=Sequence derived from alignment at scaffold_354:834150..837154- (Clytia hemisphaerica)
CAATTTCATGTTATACCAAGGAAGCCCCGGTCCACCGACCGGGTGAAAAT
CTTTTTGTCGTCACCTGACCGCATTTTTTTCAAATTTTTTCAACATTTTC
CCATTTCATCCAGTTTCATCATTGTCTACACTCGAGTGACAAATTTTCGA
CAGTCTTCATTTTGCACTGCGCGGTGCTTTTACTGATTTCGCTTTTTTAG
ATTACGTAATTCTTTTTCAGAATGAAGAAATAATAATAAATGATAATAAA
GTCAAAATAAAAAAAATGACATTAACTATGGAATGGTTTAAAACTTTGAA
ACCAGCTCACAAGACCCTTATTGTAACTGGTGCTGGTATAAGTGTAGCTT
TACTCAGTTACTCAATTTACAGACATAAAAACTCTCGAAAAGTAGATGAG
GATGATGTTAGAGATGAGGGTTCAACAAGTCCTGTTCCAGTCCGTGAAGC
TAGTTCCTGGTTAAAAGATAATATTGGATGTGACACTCCCGAGGATGTTG
GTGTTCGTAGCATGCATGTAATTGAAACTCCCAAAGATGAAGTAAATCCT
GAAGGATGGGTGACGCCTACACCCTCTAATGGAAATCTAGTGTGCCGTGA
AGTTCAAAATACAGAATCTGAAAGTTTTGAGGGCACACCTAGAGAACTTT
CACCACGTCAACCAGTTGAAAGTGAATCTACCATGGACGAAGATGTAGAA
GTGGACCGCAAGGTGATGACAATGGTTTTTTATGAACTTTTGCTTGATGA
ATATGTTTGTGGGATCAGATTAGATTAGATTTCTTTTTTAAGCAGTGACC
TTAAAACAAAATAATTCAATACTTCTGACGAAGAGCAATCCAAAAGCCTT
AGGCAACTAACATTTTAATGCATACAATTTAGTGGTCTGCTTAAATTTCA
CTCAAAATACTCCAATTAAGACACAGAGCCTTGTATTTATGCTATAATTT
TACACCTAAAAGCAACTTTTAGATTTAAAATCGTTTTTCAGATGACCAGC
TAGGTAAACTTCCTGTTTCAAACAAAAGTTTGCCCTCGAAGAAAATATCT
TTTTAGATATATTTTTTATTAATCAATCAATAGGCATCAAGAAAGATTTT
GATCTTGGGACTAGAGCAGGCAGGGAAGTCAGCTCTCTTATCTCAACTTT
CCAAAGAAGGGACAGACTGTTCAAACTATTTACCAACTAAAGGCTTCAAT
GTTGTTTGCATTTCCTTTGACACAATCGATTTGAACATTTGGGAAGGTGA
GTATGTAGGTTTTCTCATCGAACATTCTCAACTTAGGTTGAGCTACATAG
TCTTTAAGATGTTTGTCTAAATGTGTCTGTTTGTCTTTTAGTCTATGCTT
TTATTCAAATGAGAAACTTTAAGTCTGGTTGCTTGAGATTTTGTATGCTT
TTTCGTTGGATACCTACAATCAGTGCCATAACATATTGGCACTTTTCGCT
AATTTACCATTTTTCGAAAATTGAAGTTCGAGCGAGAATGTCAATTTCGG
CCCTCAACTTGATTTCAACGATTATTTCGATCTGGGAGGGATTTATTGGT
TTCTAGGCTATATTTCAAGCCCTACTGGACCATTTTTGAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTTTCC
TTTTTGTGCCAAGTTTTTCGTCACTGATTGTAGAATTGTTTGGGGTGTTT
TTTTCTATCTTTGAAATTATTATGTAAGAATTTCTAAAGTACATTTCATG
GATTATCCATCCTGAATTTATTTACTTTCTTTTGATTAACCACTTTAGTT
GGTGGTGCACTAGAATACAGATCGTACTGGAAGAACTTCAGCCAATCAAC
AGATCTCATACTATTTGCTGTTGATGCAAGTGACCGAACTAAATTTCCAG
CTGCCAAGTTATATTTCAACGACATCATTGGTGAAGCTAATGAGAACAGT
GACTTTCACATCATTGCTACGAAATCTGATCTTGAAGGAGCTGCAAAGGC
TGATGAAATCCAACATGCACTGGGTTTGGATGGTATGAAGATACATGTGG
TTGAGGTAGCTGTACGAACTGGCGGTGCTTCACAGAATATTGGGTTAGAA
GAAGTACAGAAACGCTGTTTAAATGAAGAGGATGATGTCCATCTGTAATT
AAAATGCTTGGTTTGATGGTTTTAGTGGATACAATTTGTTTTTGTGGTTA
GTTTGAATCATGATGGTATTGAGATTACTTAAAAGGGAACTATTTTTGTG
CATTTTGATGTCTCAAATAGAAACAAACCTAGTTTCATCAAATAGATTTT
CAGATTTCACTAAAAATTTCTAAAATCAAAAAGAATTAGCAAAAGAGGTT
TCAACCACAAGAAATAGCTGGATAAGGAAATTGATAACCTTGCTTCAAGT
ATTCAAGGCCAATAAAATTCACCATGTAAATTGTAAAATCTTTGTATGTA
ATCTGTGATTCCTTTCACTTGAGATGACCTTTCAGCCAGTTTTGACATTT
GAATATGTGTAGACACTGAGACACAGTAAGTTTATTGGTTGAAAGCAATA
AAAGAGACGTTTTTTAAGATGTACAGATTTTACAGGATTTTTAATTAGAT
TTTAATTTAATGACCTGCTTAGAAAGATAATATCCTTACTTTTCATATCA
TTAGGGTTCAAGTTGTTATTTATTTCTTTTCTTACATACGTAAAGACTTT
GTAAAAAGAAAATGGATGGGTTTTATGGTCCAGAAATTGTAATTATTTTC
AGATCAAATTTTAAATATGAAATATTATAACCAGAGGTATTATTCCAAAG
AAAAT

Coding sequence (CDS) from alignment at scaffold_354:834150..837154-

>TCONS_00061203 ID=TCONS_00061203|Name=TCONS_00061203|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_354:834150..837154- (Clytia hemisphaerica)
TTGGTGGTGCACTAGAATACAGATCGTACTGGAAGAACTTCAGCCAATCA
ACAGATCTCATACTATTTGCTGTTGATGCAAGTGACCGAACTAAATTTCC
AGCTGCCAAGTTATATTTCAACGACATCATTGGTGAAGCTAATGAGAACA
GTGACTTTCACATCATTGCTACGAAATCTGATCTTGAAGGAGCTGCAAAG
GCTGATGAAATCCAACATGCACTGGGTTTGGATGGTATGAAGATACATGT
GGTTGAGGTAGCTGTACGAACTGGCGGTGCTTCACAGAATATTGGGTTAG
AAGAAGTACAGAAACGCTGTTTAAATGAAGAGGATGATGTCCATCTGTAA
GCATCAAGAAAGATTTTGATCTTGGGACTAGAGCAGGCAGGGAAGTCAGC
TCTCTTATCTCAACTTTCCAAAGAAGGGACAGACTGTTCAAACTATTTAC
CAACTAAAGGCTTCAATGTTGTTTGCATTTCCTTTGACACAATCGATTTG
AACATTTGGGAAGATGACATTAACTATGGAATGGTTTAAAACTTTGAAAC
CAGCTCACAAGACCCTTATTGTAACTGGTGCTGGTATAAGTGTAGCTTTA
CTCAGTTACTCAATTTACAGACATAAAAACTCTCGAAAAGTAGATGAGGA
TGATGTTAGAGATGAGGGTTCAACAAGTCCTGTTCCAGTCCGTGAAGCTA
GTTCCTGGTTAAAAGATAATATTGGATGTGACACTCCCGAGGATGTTGGT
GTTCGTAGCATGCATGTAATTGAAACTCCCAAAGATGAAGTAAATCCTGA
AGGATGGGTGACGCCTACACCCTCTAATGGAAATCTAGTGTGCCGTGAAG
TTCAAAATACAGAATCTGAAAGTTTTGAGGGCACACCTAGAGAACTTTCA
CCACGTCAACCAGTTGAAAGTGAATCTACCATGGACGAAGATGTAGAAGT
GGACCGCAAGTTGGTGGTGCACTAGAATACAGATCGTACTGGAAGAACTT
CAGCCAATCAACAGATCTCATACTATTTGCTGTTGATGCAAGTGACCGAA
CTAAATTTCCAGCTGCCAAGTTATATTTCAACGACATCATTGGTGAAGCT
AATGAGAACAGTGACTTTCACATCATTGCTACGAAATCTGATCTTGAAGG
AGCTGCAAAGGCTGATGAAATCCAACATGCACTGGGTTTGGATGGTATGA
AGATACATGTGGTTGAGGTAGCTGTACGAACTGGCGGTGCTTCACAGAAT
ATTGGGTTAGAAGAAGTACAGAAACGCTGTTTAAATGAAGAGGATGATGT
CCATCTGTAAGCATCAAGAAAGATTTTGATCTTGGGACTAGAGCAGGCAG
GGAAGTCAGCTCTCTTATCTCAACTTTCCAAAGAAGGGACAGACTGTTCA
AACTATTTACCAACTAAAGGCTTCAATGTTGTTTGCATTTCCTTTGACAC
AATCGATTTGAACATTTGGGAAGATGACATTAACTATGGAATGGTTTAAA
ACTTTGAAACCAGCTCACAAGACCCTTATTGTAACTGGTGCTGGTATAAG
TGTAGCTTTACTCAGTTACTCAATTTACAGACATAAAAACTCTCGAAAAG
TAGATGAGGATGATGTTAGAGATGAGGGTTCAACAAGTCCTGTTCCAGTC
CGTGAAGCTAGTTCCTGGTTAAAAGATAATATTGGATGTGACACTCCCGA
GGATGTTGGTGTTCGTAGCATGCATGTAATTGAAACTCCCAAAGATGAAG
TAAATCCTGAAGGATGGGTGACGCCTACACCCTCTAATGGAAATCTAGTG
TGCCGTGAAGTTCAAAATACAGAATCTGAAAGTTTTGAGGGCACACCTAG
AGAACTTTCACCACGTCAACCAGTTGAAAGTGAATCTACCATGGACGAAG
ATGTAGAAGTGGACCGCAAGTTGGTGGTGCACTAGAATACAGATCGTACT
GGAAGAACTTCAGCCAATCAACAGATCTCATACTATTTGCTGTTGATGCA
AGTGACCGAACTAAATTTCCAGCTGCCAAGTTATATTTCAACGACATCAT
TGGTGAAGCTAATGAGAACAGTGACTTTCACATCATTGCTACGAAATCTG
ATCTTGAAGGAGCTGCAAAGGCTGATGAAATCCAACATGCACTGGGTTTG
GATGGTATGAAGATACATGTGGTTGAGGTAGCTGTACGAACTGGCGGTGC
TTCACAGAATATTGGGTTAGAAGAAGTACAGAAACGCTGTTTAAATGAAG
AGGATGATGTCCATCTGTAAGCATCAAGAAAGATTTTGATCTTGGGACTA
GAGCAGGCAGGGAAGTCAGCTCTCTTATCTCAACTTTCCAAAGAAGGGAC
AGACTGTTCAAACTATTTACCAACTAAAGGCTTCAATGTTGTTTGCATTT
CCTTTGACACAATCGATTTGAACATTTGGGAAGATGACATTAACTATGGA
ATGGTTTAAAACTTTGAAACCAGCTCACAAGACCCTTATTGTAACTGGTG
CTGGTATAAGTGTAGCTTTACTCAGTTACTCAATTTACAGACATAAAAAC
TCTCGAAAAGTAGATGAGGATGATGTTAGAGATGAGGGTTCAACAAGTCC
TGTTCCAGTCCGTGAAGCTAGTTCCTGGTTAAAAGATAATATTGGATGTG
ACACTCCCGAGGATGTTGGTGTTCGTAGCATGCATGTAATTGAAACTCCC
AAAGATGAAGTAAATCCTGAAGGATGGGTGACGCCTACACCCTCTAATGG
AAATCTAGTGTGCCGTGAAGTTCAAAATACAGAATCTGAAAGTTTTGAGG
GCACACCTAGAGAACTTTCACCACGTCAACCAGTTGAAAGTGAATCTACC
ATGGACGAAGATGTAGAAGTGGACCGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038386XLOC_038386Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061203-proteinTCONS_00061203-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061203-exon-scaffold_354-1575043694:836443..837154TCONS_00061203-exon-scaffold_354-1575043694:836443..837154Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1575043694:835909..836071TCONS_00061203-exon-scaffold_354-1575043694:835909..836071Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1575043694:834150..835156TCONS_00061203-exon-scaffold_354-1575043694:834150..835156Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1510915933:836443..837154TCONS_00061203-exon-scaffold_354-1510915933:836443..837154Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1510915933:835909..836071TCONS_00061203-exon-scaffold_354-1510915933:835909..836071Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1510915933:834150..835156TCONS_00061203-exon-scaffold_354-1510915933:834150..835156Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1491911889:836443..837154TCONS_00061203-exon-scaffold_354-1491911889:836443..837154Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1491911889:835909..836071TCONS_00061203-exon-scaffold_354-1491911889:835909..836071Clytia hemisphaericaexon
TCONS_00061203-exon-scaffold_354-1491911889:834150..835156TCONS_00061203-exon-scaffold_354-1491911889:834150..835156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:834150..837154 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.9629	21.9614	6.43484	3.35916	46.328	35.5017	28.2725	28.0764	21.8728	21.7806	18.8635	13.6571	10.8597	9.7107	10.3918	14.1629	24.5953	17.6058	6.22173	8.79874	14.3933	14.6711	43.839	37.977	78.4358	63.4184	13.9282	8.75117	29.0212	29.0165
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR024156Small_GTPase_ARF
IPR004223VitB12-dep_Met_synth_activ_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0008705methionine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO:0009086methionine biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
molecular_function GO:0008705 methionine synthase activity
Blast
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BLAST of TCONS_00061203 vs. Swiss-Prot (Human)
Match: ARL3 (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.077e-21
Identity = 50/139 (35.97%), Postives = 80/139 (57.55%), Query Frame = 2 
Query:  722 KILILGLEQAGKSALLSQLSKEGTDCSNYLPTKGFNVVCISFDTIDLNIWEVGGALEYRSYWKNFSQSTDLILFAVDASDRTKF-PAAKLYFNDIIGEANENSDFHIIATKSDLEGAAKADEIQHALGLDGMKIHVVEV 1135
            +IL+LGL+ AGK+ LL QL+ E  D S+  PT+GFN+  +      LN+W++GG  + R YWKN+ ++TD++++ +D++DR +F    +     +  E        I A K DL  AA A EI   L L  ++  V ++
Sbjct:   19 RILLLGLDNAGKTTLLKQLASE--DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQI 155
The following BLAST results are available for this feature:
BLAST of TCONS_00061203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL32.077e-2135.97ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
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