TCONS_00061190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061190
Unique NameTCONS_00061190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1892

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061190 ID=TCONS_00061190|Name=TCONS_00061190|organism=Clytia hemisphaerica|type=transcript|length=1892bp
CCTACCAAACAAACTCAAGAAGCCCCTATCCGTCACAAACAGATAGTCCC
CGCCCTCATTCTACTGATCAAACCTACCAAACAAACTCAAGAAGCACCTA
TCCGTCACAAACAGATAGTACCCACCCTCCTTCTACTGATCAAACCTACC
AAACAAACTCAAGAAGCACCTATCCGTCACAAACAGATAGTACCCGTCCT
CCTTCTACTGATCAAACCTACCAAACAAACTCAAGAAGCACCTATCCGTC
ACAAACAGATAGTACCCGTCCTCATTCTACTGATCAAACCTACCAAACGA
ACCCAAGAAGTATCTATCCGTCACAAACAGATAGTACCCGCCCTCATTCT
ACTGATCAAACCTACCAAACGAACCCAAGAAGTATCTATCCGTCACAAAC
AGATAGTACCCACCCTCCTTCTACTGATCAAACCTACCAAACGAACCCAA
GAAGTATCTATCCGTCACAAACAGATAGTACCCGTCCTCATTCTACTGAT
CAAACCTACCAAACGAACCCAAAAAGTATCTATCCGTCACAAACAGATAG
TACCCGCCCTCATTCTACTGATCAAACCTACCAAACGAACCCAAGAAGTA
TCTATCCGTCACAAACAGATAGTACCCACCCTCCTTCTACTGATCAAACC
TACCAAACGAACCCAAGAAGTATCTATCCGTCACAAACAGATAGTACCCG
CCCTCATTCTACTGATCAAACCTACCAAACGAACCCAAGAAGTATCTATC
CGTCACAAACAGATAGTACCCGCCCTCATTCTACTGATCAAACCTACCAA
ACAAACTCAAGAAGCACCTATCCGTCACAAACAGATAGTACCCACCCTCC
TTCTACTGATCACAACTTCCATACGCACTCAGTAAGCACCCAACCTCTTC
CTACCGGCGAAACTTCCACGCATCATTTTGAAAGTAGCCAACCACATCGC
ACAAACATAACCAATCCGCCATCTACGATGACTAGCACAACTAAAGAACG
CACTAGTAATCAGCCGACAGAAGGACCTCGCTCAACCGCAGCTGCTCAAC
CCTCTCAAACAGATGGCCCCCCTCCCAACGGCCCGGTTGGCAGACGGAAA
CGAGCCATTCAGAATTccccaaaaaaggaaaaaaaagtcgATTACAATGA
AGCTCTTCGTAATTTTAATTTACGGTCCAGGAGAGCTAGCTCCACGGTAA
ATGGTAAGAACAGTATCTCTCCGATGGTTCAACGCATGGTGCTGAAGATG
AACAGTTACGTTATGTTTATAAACAGTCTGATCAATCTTGATCGGCCGGC
TGGTGAGAAATGTGAATCCCAACCACAACACAATCAGCCGCATCAAGAAA
AATCTAACGGCTACAACAAAGGGCCGGAAAATGTAAATCACGGCCCGCAA
AATAACAGCGATCACAACGGCCCGCACAATGAAACACGTTGCGATGGCAT
CTTTGGCGATAAACATATCGTGGCGCAATTAGTGTTGGCTAGAGAAGTTG
GACGAAAAGTCATGGGGTGTCAGAATTGTTCTACAAGCAtgATTATGCCT
TCAACTTCGCAATGTAAAGATGAGCATTTAGTAACCTTCGTGAACAAAGT
GATGTCGGGctttgaatttggaaagaattcatttaaaatactttctgaAT
GCCCATTAGGCGATATGCAATGTTTGAATCACAGTATGGGAGTACACGAT
CCAAATCGCTTTCACTTAGCATATGAAATTTGGCGCCAAATTCTTGATTG
TCAAGAATGTTCTTCCCTAACAATGGTATGCAATGATTTCAAAGACTGTG
TACCCAAACTTCCAAAACTGATCAAAATGAGCACACTGGCAAATATCTAT
TCATATGTTTCCAATTGTCAAGATCTCGAAATGCTTTCCACC
Run BLAST on NCBI

transcript from alignment at scaffold_354:730239..735972-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061190 ID=TCONS_00061190|Name=TCONS_00061190|organism=Clytia hemisphaerica|type=transcript|length=5734bp|location=Sequence derived from alignment at scaffold_354:730239..735972- (Clytia hemisphaerica)
CCTACCAAACAAACTCAAGAAGCCCCTATCCGTCACAAACAGATAGTCCC
CGCCCTCATTCTACTGATCAAACCTACCAAACAAACTCAAGAAGCACCTA
TCCGTCACAAACAGATAGTACCCACCCTCCTTCTACTGATCAAACCTACC
AAACAAACTCAAGAAGCACCTATCCGTCACAAACAGATAGTACCCGTCCT
CCTTCTACTGATCAAACCTACCAAACAAACTCAAGAAGCACCTATCCGTC
ACAAACAGATAGTACCCGTCCTCATTCTACTGATCAAACCTACCAAACGA
ACCCAAGAAGTATCTATCCGTCACAAACAGATAGTACCCGCCCTCATTCT
ACTGATCAAACCTACCAAACGAACCCAAGAAGTATCTATCCGTCACAAAC
AGATAGTACCCACCCTCCTTCTACTGATCAAACCTACCAAACGAACCCAA
GAAGTATCTATCCGTCACAAACAGATAGTACCCGTCCTCATTCTACTGAT
CAAACCTACCAAACGAACCCAAAAAGTATCTATCCGTCACAAACAGATAG
TACCCGCCCTCATTCTACTGATCAAACCTACCAAACGAACCCAAGAAGTA
TCTATCCGTCACAAACAGATAGTACCCACCCTCCTTCTACTGATCAAACC
TACCAAACGAACCCAAGAAGTATCTATCCGTCACAAACAGATAGTACCCG
CCCTCATTCTACTGATCAAACCTACCAAACGAACCCAAGAAGTATCTATC
CGTCACAAACAGATAGTACCCGCCCTCATTCTACTGATCAAACCTACCAA
ACAAACTCAAGAAGCACCTATCCGTCACAAACAGATAGTACCCACCCTCC
TTCTACTGATCACAACTTCCATACGCACTCAGTAAGCACCCAACCTCTTC
CTACCGGCGAAACTTCCACGCATCATTTTGAAAGTAGCCAACCACATCGC
ACAAACATAACCAATCCGCCATCTACGATGACTAGCACAACTAAAGAACG
CACTAGTAATCAGCCGACAGAAGGACCTCGCTCAACCGCAGCTGCTCAAC
CCTCTCAAACAGATGGCCCCCCTCCCAACGGCCCGGTTGGCAGACGGAAA
CGAGCCATTCAGAATTCCCCAAAAAAGGAAAAAAAAGTCGATTACAATGA
AGCTCTTCGTAATTTTAATTTACGGTCCAGGAGAGCTAGCTCCACGGTAA
ATGGTAAGAACAGTATCTCTCCGATGGTTCAACGCATGGTGCTGAAGATG
AACAGTTACGTTATGTTTATAAACAGTCTGATCAATCTTGATCGGCCGGC
TGGTGAGAAATGTGAATCCCAACCACAACACAATCAGGTATGTATTTTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAACAGATAGTACCCGTCCTCATTCTACTGATCAAAC
CTACCAAACAAACTCAAGAAGCACCTATCCGTCACAAACAGATAGTACCC
GTCCTCATTCTACTGATCACAACTTCCAAACGCACTCAGCAAGCACCCAA
CCTCTTCCTACCGGCGAAACTTCCACGCATCATTTTGAAAGTAGCCAACC
ACATCGTACAAACATAACCAATCCGCCATCTACGATGACTAGCACAACTA
AAGAACGCACTAGTAATCAGCCGACAGAAGGACCTCGCTCAACCGCAGCT
GCTCAACCCAACGGCCCGGTTGGCAGACGGAAACGAGCCATTCAGAATTC
CCCAAAAAAGGAAAAAAAAGTCGATTACAATGAAGCTCTTCGTAATTTTA
ATTTACGGTCCAGGAGAGCTAGTTCCACGGTAAATGGTAAGAACAGTATC
TCTCCGATGGTTCAACGCATGGTGCTGAAGATGAACAGTTACGTTATGTT
TATAAACAGTCTGATCAATCTTGATCGGCCGGCTGGTGAGAAATGTGAAT
CCCAACCACAACACAATCAGGTATGTATTTTTCTACATTCAAATCTAATA
CACTAATGACCGGTTAGTGAGGGCTGTACGTAATAGTTATCGGACAGTTG
CGAGTACAATATGAGAAATATTTTACGAGTTCCGAGATTTTTCCGTACAA
TATTTTCCGAGCCTTTAGGCGAGGAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGT
ACGAGAAAATGTCTGATAACTGGTTTATCGGTGACCCAAAAAATGCACTT
TTTGTGTTGGAAAAAAGCGCAGGGCACTTTTGTAGCAAAGTGACGCTAGA
TTGCTGCTACCGCTACAATGCAACAACATCTTTTATAAGATATATTGTAC
TCTTTTTAACCAATCAGATTGCAGATATTTTTTGGATCGCTGATAATGTG
AAATATTGCCCAAGGTCAAGTAACGACCGAGCTTGCGAAGTCTGTTAAAG
CCCGAAAAACCGACTATTGTATTTGTTAACCTTTCCTCCAGTTTCGATTG
ATTTTTCACGCCTTATACAGAAAAAAATAGCGAAAAAAGTGCAAAAAAAC
AACGAACGAAAAGAGATTAAAAATTGTCTTCATTTCTGACGTCAAAAAGA
AAATGAGACAAATGATGTCAACGCAGTGTTCATTTTCCTTTGAAAAAACT
GAACATGTCACAATGAATTTTCCTAACGACGGGCAACTCGCAATAACCTT
AAACTCTTCAAAGTGCGGGAAGATTTATTTAAAGATACATATTTTCCGAA
TTCCCTCCTGATAATCCCGATGCAATCCCTTTAAGGCGCTCAGTGTTGAT
AGGTGTATTCGGACTAAAACGACGGGCCCCTCTCAACTGAGAAAGTGTTA
TTAAATTATTAAACTGCTCTTCTCTAACTTGCCAAGATTTTTTTGTCCTG
GCTTGAAGGTCGAATTATAGAGAGTCAACTTCATTGTTCCTGTTTTTTAT
GAAACTTTTTCTTATATAAGAATCTATTTTGGTTTATATCGCTTTTTTTT
CTGAGAGACGTTCTAATAATGAATTGGATGCATTCAATTCGTTTATTTTG
AACTCAATCCAATTTTTATAACGAATGAAATGCCGCCATTTTGGGCATTT
AATTATTTTAAATTTTTTGAATTTTTCAATTTTGGATATTTTAATTTTCT
TGATTTGTTCTGGAGGCAGCCCAAAAATGCTTTGTAAATTCAATACCAGC
TCCCTCAAAGCCGACCGCGTGGTCGTTATATTTATAGCTTTAATACTTTT
AATTTCTTGTTTATAGCCGCATCAAGAAAAATCTAACGGCTACAACAAAG
GGCCGGAAAATGTAAATCACGGCCCGCAAAATAACAGCGATCACAACGGC
CCGCACAATGAAACACGTTGCGATGGCATCTTTGGCGATAAACATATCGT
GGCGCAATTAGTGTTGGCTAGAGAAGTTGGACGAAAAGTCATGGGGTGTC
AGAATTGTTCTACAAGCATGGTAAAAAATTTGTTTTATATCTTATAATTT
CCATTTTAAATAGTTGAAAAACTCTCAAAACCGCTCCTTTATACTTCTTA
TTCGGTTGTTTAACAATCAAGTAAGTAAGTTACGCCAATAAGGGCCGTTA
ATAACGCCAAAATTTTACTGATGCTTCAAGTTAGTAAACAATGACTAAAA
TTTACATTAAAATGTCATTTTCCAGTAGTAAACTGTAGAAAATTCCATCA
AAAATCACTGATTTTTAAATATATTAAATATTTCACCGAAGTTTTAAATA
TGGAGTAAAACAATGGATAATTTTCGTCTTCGAATCATACCTAAAATCCT
TTAAATTGAGAAATAATTATTAAAAATTAACGCCGCTTTTAGTTTAAAAT
TGCAAAATCTTGGCCTTTTTTAACGCAAGCCCTTATTACGCCACGAGCCC
AAAAATAACACCAATAAGGGCCGGTGTAAAAAGGGCCGATAAGGTAATTA
AGACTATGGACGACTACGGTCGAAAAGGTGTATAGAGAATGAGTTGTGTG
GTTGTGGGGTCGTGGATATAACTTATTAATCACCAATCGAAATTTATCCA
GGTTCACTAAATTTGTTAAAGTTAGTAATTCGTATCTCCTTAGATTATGC
CTTCAACTTCGCAATGTAAAGATGAGCATTTAGTAACCTTCGTGAACAAA
GTGATGTCGGGCTTTGAATTTGGAAAGAATTCATTTAAAATACTTTCTGA
ATGCCCATTAGGCGATGTAAGTATGATTTTATCATTTCCATGACATTTTC
AAACCCTTTTCTGAATGTGGTCGAAAAGGTTTGGAAAACATATTTTCTTT
TTAGTGACATAATCAAAACGGTTTGACAAGAAGTCTCGAACAACCCTGTT
TCTAGATATAATGTCTCAGTTTTCAGATGACCATCCCGGGCTACTAGGGT
TTGTGAATGAGGGCTATGTGCGGACGGAACCTCCGAAAACCAACCCTTCG
AGAGACTGTTTTTTGCTGAAAAGGTGACCCTTAGTCTTAGAGAGACTTGT
TTTAAAAGTTTTCTTCTATTTTTGAAAAAAGTCTTACCCTTTTCTCTGAA
ATCAAAAAAAATCCTGAAAATCGTGAATTTTCTAACCCTTAGAGAAAACC
TTTCTGATTTTATTTTCAACCCTTAGAGAGACTTTGAAAGGTAAAAAACC
GACCCTTACCGTCCGCACATAGTATACCCATCATCCATTTTTGCCTAAGT
AGTACCCCTCCCTGGATGACCGTACAAGGTTTACACCTTTGTATTCCTCG
TCTGTTGGTAATCTAATGGCAGTAATTTGACTTTTTCCTTTCTCTTTCCA
GATGCAATGTTTGAATCACAGTATGGGAGTACACGATCCAAATCGCTTTC
ACTTAGCATATGAAATTTGGCGCCAAATTCTTGATTGTCAAGAATGTTCT
TCCCTAACAGTAAATAGCTTTCTTAATGATATTCTCTTTTCGGAAGTGCT
GGTAGGTACCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAAATT
TTAGCAAGTGACGAATAATTTTCCCGACGAAGTTTTCCCCGATAAGGTAT
TCATAGATAATACCTCAACGGCCCTTTAATCGACATTTAAGTCCATTCAC
TTTAAGTATGCAATCTCATTGCTATCTATCATATGGGAACCATCCTCAAG
GAAATTACTCATATTACACTGGTATGGTTTTCACATAACAATTAAATACT
GGTTTCGATTTGCATGAAAAAAACGAGGGTAGAACAAAGCTTCCTCGTAA
AAATCTTTAAATGTTTTTTTTTCTTCAAATTTCCCTGATTTATCGAATAT
GTGCTTGCTTTCAGATGGTATGCAATGATTTCAAAGACTGTGTACCCAAA
CTTCCAAAACTGATCAAAATGAGCACACTGGCAAATATCTATTCATATGT
TTCCAATTGTCAAGATCTCGAAATGCTTTCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038381XLOC_038381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061190-exon-scaffold_354-1575043694:734636..735972TCONS_00061190-exon-scaffold_354-1575043694:734636..735972Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1575043694:732203..732406TCONS_00061190-exon-scaffold_354-1575043694:732203..732406Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1575043694:731457..731579TCONS_00061190-exon-scaffold_354-1575043694:731457..731579Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1575043694:730764..730871TCONS_00061190-exon-scaffold_354-1575043694:730764..730871Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1575043694:730239..730358TCONS_00061190-exon-scaffold_354-1575043694:730239..730358Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1510915933:734636..735972TCONS_00061190-exon-scaffold_354-1510915933:734636..735972Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1510915933:732203..732406TCONS_00061190-exon-scaffold_354-1510915933:732203..732406Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1510915933:731457..731579TCONS_00061190-exon-scaffold_354-1510915933:731457..731579Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1510915933:730764..730871TCONS_00061190-exon-scaffold_354-1510915933:730764..730871Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1510915933:730239..730358TCONS_00061190-exon-scaffold_354-1510915933:730239..730358Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1491911889:734636..735972TCONS_00061190-exon-scaffold_354-1491911889:734636..735972Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1491911889:732203..732406TCONS_00061190-exon-scaffold_354-1491911889:732203..732406Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1491911889:731457..731579TCONS_00061190-exon-scaffold_354-1491911889:731457..731579Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1491911889:730764..730871TCONS_00061190-exon-scaffold_354-1491911889:730764..730871Clytia hemisphaericaexon
TCONS_00061190-exon-scaffold_354-1491911889:730239..730358TCONS_00061190-exon-scaffold_354-1491911889:730239..730358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:730239..735972 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.184315	0.175681	0.133062	0.133334	0	0.101801	0	0.0253723	0.0289909	0	0	0	0.0063278	0	0.0240977	0.0257249	0.109495	0.096905	0.0224086	0.0468979	0.1229	0	0.0751444	0.226999	12.0037	7.70735	0.11562	0	0	0.168031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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