|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061181 ID=TCONS_00061181|Name=TCONS_00061181|organism=Clytia hemisphaerica|type=transcript|length=2365bpRun BLAST on NCBI protein sequence of TCONS_00061181-protein >TCONS_00061181-protein ID=TCONS_00061181-protein|Name=TCONS_00061181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp MFRRELWRGTLRHQKTSKQIWWMTCRNLQQESWVKWLYDNDENLDKLKGGRun BLAST on NCBI transcript from alignment at scaffold_354:621607..633115- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061181 ID=TCONS_00061181|Name=TCONS_00061181|organism=Clytia hemisphaerica|type=transcript|length=11509bp|location=Sequence derived from alignment at scaffold_354:621607..633115- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:621607..633115- >TCONS_00061181 ID=TCONS_00061181|Name=TCONS_00061181|organism=Clytia hemisphaerica|type=CDS|length=19908bp|location=Sequence derived from alignment at scaffold_354:621607..633115- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061181 vs. Swiss-Prot (Human)
Match: DCMC (Malonyl-CoA decarboxylase, mitochondrial OS=Homo sapiens GN=MLYCD PE=1 SV=3) HSP 1 Score: 288.886 bits (738), Expect = 1.338e-87 Identity = 162/402 (40.30%), Postives = 231/402 (57.46%), Query Frame = 1
Query: 289 DFVSHYGTLKNMENKSRFFQLLSEKLGCNNEDI-QNNMKLLKESMDTRDK-LTHRHRHQLSASLTPTYKQLFDDVSKLEDGVGFLVDMRKDLLFSQRKGFVPKTLELQTFDTFLKEHLAQWFAGGFLDLHQVTWDETSADLMEKLMKYEAVHPIVNWNDLKKRAAVGRRIFMFSHRLMPGEPLVVLYVLLGNHIPNNIQNVLS--SEQSVEDKEEITTATFYSISSTQRGLDGIGLGNVLIKRVVEELRREFHNMKTFVTLSPIPGFKRWL----DQQIKNHKEG----------VSSRYGDLLESSAMEHLRDDGWVKDMKKCNQLQPVLQSLCARYLLHEKRRGFAMDPVANFHLRNGASLWRINWLANTEPRGLKSSHTLMVNYRYDLSQIETNNLKYV 1440
DFVS YG L ++ L+ G ++ + + + +L R+ + + +L +L P Y+ LF +SKL+ GV FLV +R DLL +Q V + +++ + LK L++WF+ GFL+L +VTW + ++++K+ + EAVHP+ NW D+K+R RR + FSH PGEPLVVL+V L I +NIQ ++ E+K +IT A FYSIS TQ+GL G+ LG LIKRVV+EL+REF ++ F +LSPIPGF +WL + Q K H +S G + + L WV+ K LQ L LCA YL EK RG+A++PVANFHL+NGA LWRINW+A+ RG+ S LM NYRY L + N+ Y+
Sbjct: 70 DFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAEQSAGVLHLRQQQREAAVLLQAEDRLRYALVPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLV-EGPDVREMNGVLKGMLSEWFSSGFLNLERVTW-HSPCEVLQKISEAEAVHPVKNWMDMKRRVGPYRRCYFFSHCSTPGEPLVVLHVALTGDISSNIQAIVKEHPPSETEEKNKITAAIFYSISLTQQGLQGVELGTFLIKRVVKELQREFPHLGVFSSLSPIPGFTKWLLGLLNSQTKEHGRNELFTDSECKEISEITGGPINETLKLLLSSSEWVQSEKLVRALQTPLMRLCAWYLYGEKHRGYALNPVANFHLQNGAVLWRINWMADVSLRGITGSCGLMANYRYFLEETGPNSTSYL 469 The following BLAST results are available for this feature:
BLAST of TCONS_00061181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.