|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061166 ID=TCONS_00061166|Name=TCONS_00061166|organism=Clytia hemisphaerica|type=transcript|length=6249bpRun BLAST on NCBI transcript from alignment at scaffold_354:448057..463560- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061166 ID=TCONS_00061166|Name=TCONS_00061166|organism=Clytia hemisphaerica|type=transcript|length=15504bp|location=Sequence derived from alignment at scaffold_354:448057..463560- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061166 vs. Swiss-Prot (Human)
Match: TDRD1 (Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 5.010e-44 Identity = 205/891 (23.01%), Postives = 372/891 (41.75%), Query Frame = 3
Query: 60 SVAVRGMLLSELAAKPFPDEQEFSICVTEVVSPHLFYGQLLTEESVESIQKLTIELANVYSSEPATSFTPKINEICVAKF-MDGQWYRASVIQYNSDM---TAHVFFFDFGNKCDVETSDIRCIKQHLLAYPRMAQKYSLANIESTKGSWGQESIAMMSTCQNNMVNATCVNIKVDLME-------CSLKMDGDAQSMEEKLIQKGLARVKSGRNASDMKID-----------------------------LPTDDSFTVIVMHVKDTSSFHGQLLTSENIEEITXXXXXXXXXXXAPKTDITLKKDAICAAFHQEFQEWYRVQILDPNSQNGKVLLKLLDYGDELMIDTSQLRQLPSLLFDVPVKAIPMTLSGAKVDSNC-TNYQQCVEKLNKLILQKKCEIEVVNRESNRLHVKLSSDGIDCHQHLSEFL--EANPIGCQI--------VEQASKPVMIEDV--PL------VSTADSGDFLVTNIEDPSQIHGQLVVNIEEISHLDIISADLTERFLNKT-DEYQPKVGEICAAFFATFSQYFRAIVREINNDKTAVVQYIDYGNGSTVPFSQITPLPKEHSTTPRQAVQFSLFS-EAGKVPWTKDCIDELKEILLN-KIASYKTTKKEGGIVVAELSTENMNINQIFSKYLVRDEKPAQPLTSEASQHAKQPITDTESPVNNSVTTTHSQ------SVDQYTKKPAFAVPDRCDVTIQHIENAQLFYA-QENTQEKYGQLSMLTQAMTDHCSVDTT--PYQPTVGDLCCGLF--EGIWSRCLVIKTIANEATIFFIDFGNTSMLPFGSLRRMAPQFIQLP--------SFAMTLKLSRSQIASNVTEKFIKMALNEIYEMKVLERNQNVLTVQLFDRQTGDDIEDYL 2489
++ ++ S+L + E VTE P FY QL + E +E + +L+ L Y++ + P E+C+AK+ +D W RA +IQ N D+ AHV + D+GN+ + + I + +++ +P A K +AN+ +G+W + I ++ C VD++E +++ + ++ LI+ G SG+++ D L D F +V H++ F Q L S S P++D IC A E +WYR +L S+ VL+ +DYG+ ++ +L + L ++P++AI L+G K T C+ K KL+ K ++VV++ N V+L H +S+ L +G Q V++ S P+ +E PL + + D +V I P + + V+ + + L+ ++ L E K + ++ ++G+ C AFFA ++RA+V+EI + V ++DYGN V ++ + P Q ++ L ++ W+++ I + + K+ + E GI V EL+ + +I S L+ + + AS H P + VN H Q S +Q+ K V + I + LFYA + E +L MLT + ++C+ + PY+P +GD CC + + W R +V+ T + + + D+GN LP ++ + + LP M L S SQ+ + + F+ + N + +K + +N + ++V+ D+ D L
Sbjct: 244 AIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRA-IIQ-NVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEGNWSSDCIKATKPL---LMEQYCSIKIVDILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPPRSDFYPAIGDICCAQFSEDDQWYRASVLAYASEES-VLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTPEAICLMK--KLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEWTWVELGVDQTVDVVVCVIYSPGEFYCH-VLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGIGV-ELTDLSTCYPRIISDVLIDEHL----VLKSASPHKDLP---NDRLVNKHELQVHVQGLQATSSAEQW-KTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLEYCNAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLGTSDTDVEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRCSLEGLMELNGSSSQLIIMLLKNFM-LNQNVMLSVKGITKNVHTVSVEKCSENGTVDVADKL 1115 HSP 2 Score: 88.5817 bits (218), Expect = 3.304e-17 Identity = 104/434 (23.96%), Postives = 183/434 (42.17%), Query Frame = 3
Query: 3702 MKIDLRDLS-GGTYELK--ITHVESPYMIYANFKDRIVTKELNDLCVLMASTYANDSSVSNL-KPGSLCAVK--VKELWMRGLVTGMD-EESNYSIFLIDFGNSIAAPKNEARALSPEFRRVPAQVVPLKLITVKPVEEQEEWSNEVCQFLKEFIIGQNVRVKPE---YKDGIIFGARIKV--QDQPLDKLLSDSGYAVKVDPIIPS--DSHAQN--KKDPRKAIPFSDISKQIDVEQPTM----------EDFEAYVTCVVSPRLFYCRMLDDEKEKAVDEVSAGLKAHFEGK-ESEGFEYSEGDLCAIKLT-DGQWYRGFIVRLHSNETASIWLCDFGSKYTMQREEIYPLPDKFKELPAQSVTLQMQYLVPINNTGYPKEASDYFRLLVVNRILKVKILKKHQTIYRVALFDKKTG--TDVGEKYVNKGYA 4913
M DLR L T E+K +T + P Y V + +N L + TYAN + G +C K V + W R ++ +D ++ + ID+GN P N L+ P + + V P E WS++ + K ++ Q +K ++ + F +++ + LD +L + GY +K PS DS +N + DP + I V++ + ++F V + +P F+C+ L ++ A E+ A L + + F + GD+C + + D QWYR ++ S E+ + D+G+ + + P+ K ELP Q++ + + P P EA + LV N+I+ VK++ K + V L DK V + ++ G+A
Sbjct: 251 MFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEGN--WSSDCIKATKPLLMEQYCSIKIVDILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLK-----PSGQDSKKENADQSDPEDVGKMT-TENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLA--ELQASLSKYCDQLPPRSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTP-EAICLMKKLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFA 673 HSP 3 Score: 86.6557 bits (213), Expect = 1.256e-16 Identity = 79/344 (22.97%), Postives = 144/344 (41.86%), Query Frame = 3
Query: 3885 GSLCAVKVKE--LWMRGLVTGMDEESNYSIFLIDFGNSIAAPKNEARALSPEFRRVPAQVVPLKLITVKPVEEQEEWSNEVCQFLKEFIIGQNVRVKPEYKDGIIFGARIKVQDQP------LDKLLSDSGYAVKVDPII---PSDSHAQN--KKDPRKAIPFSDISKQIDVEQPTMEDFEAYVTCVV-SPRLFYCRMLDDEKEKAVDEVSAGLKAHFEGKESEGFEYSEGD-LCAIKLTDGQWYRGFIVRLHSNETASIWLCDFGSKYTMQREEIYPLPDKFKELPAQSVTLQMQYLVPINNTGYPKEASDYFRLLVVNRILKVKILKKHQTIYRVALFDKKT 4871
G +C + E W R V E + + +D+GN + P+ +P Q + L VKP W+ E +K+ + QN + + D + + +++ D+ + K+L D+G+AV ++ PSD + K P ++ V+Q V CV+ SP FYC +L ++ K +++++ L H + K GF+ G CA DG WYR + + N + D+G+ + +E+ + F LP Q + Q+ + N + +EA F++ V L+ ++++ + V L D T
Sbjct: 545 GDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKP--SLGIWTPEAICLMKKLV--QNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEWTWVELGVDQTV-----DVVVCVIYSPGEFYCHVLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLAD-IQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGIGVELTDLST 878 The following BLAST results are available for this feature:
BLAST of TCONS_00061166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.