TCONS_00061155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061155
Unique NameTCONS_00061155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061155 ID=TCONS_00061155|Name=TCONS_00061155|organism=Clytia hemisphaerica|type=transcript|length=689bp
GACTTCcacaacagggggtatacggattttttctggaaaagcccaataaa
aTACAATGAAATACACTGTGTCTCTTGGACACTAGTTTGTAGAGGACACA
TATTCTGCCACTCTCGCTTGGCTATTTCTTTGTTATAAGACcttttattt
taaagatatgtcacaaaatttagaaacaaaatgacTTTATTTCTCCATTG
AAACTTTCGTAAGGTCACCATTTCACAACTCAAAACCAAACTTATAGATT
GCAATTTTGAAGTGATTTGCAAGACAAATTTTTATCACTCTTGGAAATGT
TTTTGTATACGTACAGTCCCTGGCCCACAGAATCCAGGTACCCCACAGAA
TGCAGGTTAATGTGACATGGAAAATCcttttgaaatgaaatcttAACCTT
TCCTTTTGTGTTTGATTTTTACAACAGTATTCTTaaaattaaatgatttt
tctctCATTCAGAATTCCCAAAATGGCTGACAGAGTTGAGCACGACTCCA
ACTATATGGGATGGTGTCATTTTGAGCGGCAAAGTAGCAGACCAATATAA
TACACtcatcaaatcaaacaaagccACTCTTCTTGATTTGAGGAATTATA
TTTTCTTGAGGCAATGCAAATTATTGATCAAGATGAAAAGGAAATGGGAA
ATCCCTTCAAGATTattggaatttctttttgcgGTCATC
Run BLAST on NCBI

transcript from alignment at scaffold_354:329081..329769-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061155 ID=TCONS_00061155|Name=TCONS_00061155|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at scaffold_354:329081..329769- (Clytia hemisphaerica)
GACTTCCACAACAGGGGGTATACGGATTTTTTCTGGAAAAGCCCAATAAA
ATACAATGAAATACACTGTGTCTCTTGGACACTAGTTTGTAGAGGACACA
TATTCTGCCACTCTCGCTTGGCTATTTCTTTGTTATAAGACCTTTTATTT
TAAAGATATGTCACAAAATTTAGAAACAAAATGACTTTATTTCTCCATTG
AAACTTTCGTAAGGTCACCATTTCACAACTCAAAACCAAACTTATAGATT
GCAATTTTGAAGTGATTTGCAAGACAAATTTTTATCACTCTTGGAAATGT
TTTTGTATACGTACAGTCCCTGGCCCACAGAATCCAGGTACCCCACAGAA
TGCAGGTTAATGTGACATGGAAAATCCTTTTGAAATGAAATCTTAACCTT
TCCTTTTGTGTTTGATTTTTACAACAGTATTCTTAAAATTAAATGATTTT
TCTCTCATTCAGAATTCCCAAAATGGCTGACAGAGTTGAGCACGACTCCA
ACTATATGGGATGGTGTCATTTTGAGCGGCAAAGTAGCAGACCAATATAA
TACACTCATCAAATCAAACAAAGCCACTCTTCTTGATTTGAGGAATTATA
TTTTCTTGAGGCAATGCAAATTATTGATCAAGATGAAAAGGAAATGGGAA
ATCCCTTCAAGATTATTGGAATTTCTTTTTGCGGTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038367XLOC_038367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061155-exon-scaffold_354-1575043694:329081..329769TCONS_00061155-exon-scaffold_354-1575043694:329081..329769Clytia hemisphaericaexon
TCONS_00061155-exon-scaffold_354-1510915933:329081..329769TCONS_00061155-exon-scaffold_354-1510915933:329081..329769Clytia hemisphaericaexon
TCONS_00061155-exon-scaffold_354-1491911889:329081..329769TCONS_00061155-exon-scaffold_354-1491911889:329081..329769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:329081..329769 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174604	0	0.210884	1.18729	0	0	0	0	0	0	0	0.305629	0	0	0	0.208929	0	0	0.0785701	0	0.0906088	0	0	0	0	0	0	0	0.0961466	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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