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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061153 ID=TCONS_00061153|Name=TCONS_00061153|organism=Clytia hemisphaerica|type=transcript|length=1778bp
CAACTTCTTCATCTACCAAAGAACTTTCGATAataaaaaataaggaaata
aaCATCCAAACTTTCCACATGTCCACTTAAAATCACATGACTGAATACTT
GCATTTGTTTGGCTAGTGACATCGTATAaatgaaatcatcaaaatttaca
ttaacacactaattacagaaattacattgcggtgcaagtctgtgatcgaa
accttcatactaccaatcggcagaatgttaTTGAGACATCGTGGACTAGA
CTCAATGGacgcaatggactgtgttcgaacCCAAGCACTACAAGGCAGAT
TGTTAGGGAAATATAATGACAGGAATTACacttgattttaaaaagaatgt
gaagaaaaagaattttaaaacacaaaaaaaaaacaccaacatTCACATAA
AACATCCAGTTAAAAGACTATAAAAGATTTAAAATGTGTTCTAAAGATCT
TTAGCTTGCATTATTGATTACATCGATacacagttgactctctctaattc
gatttttgaAGGGCAGATAATAttcttcgaattaaagaaatattcgaatt
acagaaagtattttataccATTGTCCAGTAGTTAAGggaaccaatatttt
agttcgaaatACGGAAAGATACGAATCGCAGAAGTTCGAAATAGTTAGTG
AGAGATTTGACTGCGTTTAACCTCGATGATTCAACTACACAGAGACGCCT
TCCAATTTCTCTAATCATCTGTTTAGAGACATGTTCACCTCCTCGCCATA
ATCTTTGTGTCCTCTTCGACGTCTCAAAAAGATAGCCAACCCAACCAATC
CAATCAAAACTAATATCGCCAACACCACCATTAAGATGATGAAACCAGTA
TCTGGAGTTGATAATTGACGTTGTTGACCATGATAACTTTCGTTGCATTG
GCATGTATATCCCATTGAAATATCACTTTTCTTACAATTTCCATCCCTCT
GACAGGGGTTATGAAAATAGCAAATATTTTTCATTTGACAGCGCTCACAA
GAATATCCTACACGACAATCGCATTTATATCCCATTGAAATATTACTTAT
CTGACAAATTCCATCATTCTGACAGGGGTTAGCAAGGTAACAAATATTTT
TCATTTGACAGCGCTTACCAGAATATCCTACACGACAATCGCATTTGAAT
GTATTTTGGATTGGCACACATATACTTTTGGTTATCTCTTGGCATGGTTT
CAATCTCAGGTCAAATGAACAGGCGTTTTTGAATTGACAAAATTCTCCAT
GGTTATTTCGACTGCAGGAACAATTGTAATTGAATTGGTCAATAACTTGA
CATGTTGCATCGTTTTGGCATTCATTGACAGAACAGGAACTACAATTTTA
TTTGTTCTTGCGGTAGAAATCTTCTAATTCAATACCATTGTATTTACCCT
CAACTCTTCCAGGATGGtaaatttcactgaaataatTAATTGTATCTTAC
ATAACGTAATCACATATCAATGGGTTGTCCTTGAGTTTCAAATAATCAGG
AACAACTGAACCATCAAACCAATCTCTTTGTGCTGTTGTTATATTATTTT
ACTGCAAGTTTATCGAAATCAGAGACAGAAGATCACCAAAGACTCCAGTT
TCAACAGTCGTTATATCATTACTAGATAAGAATAATTGTCGCAACTTAGC
TAATCCGGtaaaccatgaacatataaacaactggacgtctatcttttact
gtctctttgaagcgagcttcattgccgcctgtatttcaaaattggtatga
aaaatccgacaatattccgtcataattt Run BLAST on NCBI transcript from alignment at scaffold_354:193040..194909- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061153 ID=TCONS_00061153|Name=TCONS_00061153|organism=Clytia hemisphaerica|type=transcript|length=1870bp|location=Sequence derived from alignment at scaffold_354:193040..194909- (Clytia hemisphaerica)
CAACTTCTTCATCTACCAAAGAACTTTCGATAATAAAAAATAAGGAAATA
AACATCCAAACTTTCCACATGTCCACTTAAAATCACATGACTGAATACTT
GCATTTGTTTGGCTAGTGACATCGTATAAATGAAATCATCAAAATTTACA
TTAACACACTAATTACAGAAATTACATTGCGGTGCAAGTCTGTGATCGAA
ACCTTCATACTACCAATCGGCAGAATGTTATTGAGACATCGTGGACTAGA
CTCAATGGACGCAATGGACTGTGTTCGAACCCAAGCACTACAAGGCAGAT
TGTTAGGGAAATATAATGACAGGAATTACANCGTGGACTAGACTCAATGG
ATGCAATGGACTGTGTTCGAACCCAAGCACTACCAGGCAGAGTGACAGGG
AAATATAATGACAGAAATTACACTTGATTTTAAAAAGAATGTGAAGAAAA
AGAATTTTAAAACACAAAAAAAAAACACCAACATTCACATAAAACATCCA
GTTAAAAGACTATAAAAGATTTAAAATGTGTTCTAAAGATCTTTAGCTTG
CATTATTGATTACATCGATACACAGTTGACTCTCTCTAATTCGATTTTTG
AAGGGCAGATAATATTCTTCGAATTAAAGAAATATTCGAATTACAGAAAG
TATTTTATACCATTGTCCAGTAGTTAAGGGAACCAATATTTTAGTTCGAA
ATACGGAAAGATACGAATCGCAGAAGTTCGAAATAGTTAGTGAGAGATTT
GACTGCGTTTAACCTCGATGATTCAACTACACAGAGACGCCTTCCAATTT
CTCTAATCATCTGTTTAGAGACATGTTCACCTCCTCGCCATAATCTTTGT
GTCCTCTTCGACGTCTCAAAAAGATAGCCAACCCAACCAATCCAATCAAA
ACTAATATCGCCAACACCACCATTAAGATGATGAAACCAGTATCTGGAGT
TGATAATTGACGTTGTTGACCATGATAACTTTCGTTGCATTGGCATGTAT
ATCCCATTGAAATATCACTTTTCTTACAATTTCCATCCCTCTGACAGGGG
TTATGAAAATAGCAAATATTTTTCATTTGACAGCGCTCACAAGAATATCC
TACACGACAATCGCATTTATATCCCATTGAAATATTACTTATCTGACAAA
TTCCATCATTCTGACAGGGGTTAGCAAGGTAACAAATATTTTTCATTTGA
CAGCGCTTACCAGAATATCCTACACGACAATCGCATTTGAATGTATTTTG
GATTGGCACACATATACTTTTGGTTATCTCTTGGCATGGTTTCAATCTCA
GGTCAAATGAACAGGCGTTTTTGAATTGACAAAATTCTCCATGGTTATTT
CGACTGCAGGAACAATTGTAATTGAATTGGTCAATAACTTGACATGTTGC
ATCGTTTTGGCATTCATTGACAGAACAGGAACTACAATTTTATTTGTTCT
TGCGGTAGAAATCTTCTAATTCAATACCATTGTATTTACCCTCAACTCTT
CCAGGATGGTAAATTTCACTGAAATAATTAATTGTATCTTACATAACGTA
ATCACATATCAATGGGTTGTCCTTGAGTTTCAAATAATCAGGAACAACTG
AACCATCAAACCAATCTCTTTGTGCTGTTGTTATATTATTTTACTGCAAG
TTTATCGAAATCAGAGACAGAAGATCACCAAAGACTCCAGTTTCAACAGT
CGTTATATCATTACTAGATAAGAATAATTGTCGCAACTTAGCTAATCCGG
TAAACCATGAACATATAAACAACTGGACGTCTATCTTTTACTGTCTCTTT
GAAGCGAGCTTCATTGCCGCCTGTATTTCAAAATTGGTATGAAAAATCCG
ACAATATTCCGTCATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061153-exon-scaffold_354-1575043694:194581..194909 | TCONS_00061153-exon-scaffold_354-1575043694:194581..194909 | Clytia hemisphaerica | exon |
| TCONS_00061153-exon-scaffold_354-1575043694:193040..194488 | TCONS_00061153-exon-scaffold_354-1575043694:193040..194488 | Clytia hemisphaerica | exon |
| TCONS_00061153-exon-scaffold_354-1510915933:194581..194909 | TCONS_00061153-exon-scaffold_354-1510915933:194581..194909 | Clytia hemisphaerica | exon |
| TCONS_00061153-exon-scaffold_354-1510915933:193040..194488 | TCONS_00061153-exon-scaffold_354-1510915933:193040..194488 | Clytia hemisphaerica | exon |
| TCONS_00061153-exon-scaffold_354-1491911889:194581..194909 | TCONS_00061153-exon-scaffold_354-1491911889:194581..194909 | Clytia hemisphaerica | exon |
| TCONS_00061153-exon-scaffold_354-1491911889:193040..194488 | TCONS_00061153-exon-scaffold_354-1491911889:193040..194488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:193040..194909 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061153 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.737e-18 Identity = 55/163 (33.74%), Postives = 70/163 (42.94%), Query Frame = -3
Query: 850 CSVNECQNDATCQVIDQFNYNCSCSRNNHGEFCQFK-NACSFDLRLKPCQEITKSICVPIQNTFKCDCRVGYSGKRCQMKNICYLANPCQNDGICQISNISMGYKCDCRVGYSCERCQMKNICYFHNPCQRDGNCKKSDISMGYTCQCNESYHGQQRQLSTPD 1335
C+ N CQN C Y C CS G C+ N CS KPC + CV F C CR Y+G+RCQ+ C PC+N G C S G C C G+ ERCQ NPC C+ + S Y C C+ Y G+ + + P+
Sbjct: 4017 CASNPCQNGGVCNPSPAGGYYCKCSALYIGTHCEISVNPCSS----KPC--LYGGTCVVDNGGFVCQCRGLYTGQRCQLSPYCK-DEPCKNGGTCFDS--LDGAVCQCDSGFRGERCQSDIDECSGNPCLHGALCENTHGS--YHCNCSHEYRGRHCEDAAPN 4168
The following BLAST results are available for this feature:
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