TCONS_00061152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061152
Unique NameTCONS_00061152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061152 ID=TCONS_00061152|Name=TCONS_00061152|organism=Clytia hemisphaerica|type=transcript|length=900bp
GTCTGCATTTGaacaaatgaacaaattttagaACAATTCACATATTTTCG
AAAGGTCGTGGCGTCTTCGTACGGAGTATAGATTGAACATAATAGAAATA
TGAGTGGAACGCCCCCAATAAACATTCAAAAGGAGACAACAActcctgaa
aaaagaaaaagtggaGGGGAGTTTGCTGTACCAAGCACCCCACCAAAACA
TACCTCGCCACGTCATCATCCATATTTTCAACATCATGGATTGACAGTAC
CATCTCCTATACCATGTAGAAGAACTCGAACCACATCTGTGTCGAGATTA
GCAGCAGACAGTCCATTACAGCAAGGAATTGTGGTCAGCTTTTGTCGTGA
AAAGGGACATGGATTTGTCAAGCCAGATGATGAAGAGAAGGCAATTTTTC
TACACATTTCTGATATCGAAGACGATTATGTCGTCCGAAAAGGAGACCGG
GTCGAGTTTAGAACCATCCCCATGCCACCAAAAAAAGTTGAGCGCATGGC
TGTCGAAGTTCATTTAATTTCATTGGATGAAAGTGCGCCACACGAAAGAT
GGGACAACCAACCTGATGTGTAGATAAACCGAATTTTCCGTAAATCTTAT
TAATAATAAGACTAATTTTTGTGATTCCGATAAAAGTCGGATTATCTCAT
GATTATTTCCGGTTATCGGATATAGTTCGTTAGGGATTTAAGGCCCTTAA
TTGTATGATAGGTATTAACAGTAACATTGTGAGAAACACCAtgcatttta
tgattttaatatTATATTAATAGGGCTTTGAGTCAAAATTGCTAAATTTT
CTGTTCTATCTTCTTGGGTTTCACAAATGAACTTTAATAAAGATGACTAG
TTGGGTATAAGATATCAGAAAGTTTTCAACTCTTTATTAGGCtatttcag
Run BLAST on NCBI

protein sequence of TCONS_00061152-protein

>TCONS_00061152-protein ID=TCONS_00061152-protein|Name=TCONS_00061152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSGTPPINIQKETTTPEKRKSGGEFAVPSTPPKHTSPRHHPYFQHHGLTV
PSPIPCRRTRTTSVSRLAADSPLQQGIVVSFCREKGHGFVKPDDEEKAIF
LHISDIEDDYVVRKGDRVEFRTIPMPPKKVERMAVEVHLISLDESAPHER
WDNQPDV
Run BLAST on NCBI

transcript from alignment at scaffold_354:140735..158607-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061152 ID=TCONS_00061152|Name=TCONS_00061152|organism=Clytia hemisphaerica|type=transcript|length=17873bp|location=Sequence derived from alignment at scaffold_354:140735..158607- (Clytia hemisphaerica)
GTCTGCATTTGAACAAATGAACAAATTTTAGAACAATTCACATATTTTCG AAAGGTCGTGGCGTCTTCGTACGGGTGAGAGTAGATCTTGTATATCTCTA TCTTTGATCTGGAGTTCCTGAACCTTTAGGATGTAACTTGGTCTTGGCAG TTTCCATCAATATTAGGCAGTGTAGACCTAACTGTTCATACAAAAATTAC GGGAAACGCATATTTGGACTTTGTACCCTATGCTGCACTCAAGCACTTAA GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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TGTTGAAAAAATTGCTGTTTTCGGCAATAACAGCTTCTGAATTTTTTCAA CTGAGTGTATAGCAGTCAAAATTGAAACATTTAAAAACCAGTTGTTATAC TATNAATTCCAAAGACACTGAGTGTATAGCAGTCAAAATTGAAACATTTA AAAAACCAGTTGTTATAGTTTCTGCTTACAGAGCACCAGAAACAAAATTG CCATACCTCGAAAATTTAACAAGGGACATTAAATCAATTGCCTCAAAGTA CGAGACAAGTCCAATCTGGATTGGGGGCGACTGGAATCTACCTGAATTGA CTGGTCAACAAACTCAATCGTCAGTCACAATTACTCAAAACAAATCAACG AAACAGCAATTAAAATACTTTATGACTGTAACCTTGACCAAATCATTGAC TTTCGAACAAGAATAAACAATACCCTTGATATAATATTGACAAATAACTC TTCACTCCTGTCAGATGTGAAGGATTTCCCAGGGATAAGTGATCACACTG CTATTGGCGTAATTGACGTTATGTGCCATCCTATCAGTCAGCGCTCAATT AAAAGAACAGTCCATGTATGGAGTAGAGCGAACATTCCATCACTGAAAGA AGACCTAAAAACAACATGTGCACTATTCTGTGCTAAACATGACAATGGAG ATTTTGCTATTGACACGATATGGGGCGAGACATTATCAACGAAACCATGA GAAAGATACCAACCAAAACTCTACGTCAAAGATTCAGCCAGCCATGGGTA AATCGGAAGTGTAGAAGATTATCCCGCAGAAAGAAACGCCTATACAAACG CCCAAAACGAACACGACTCGAATCAGATTGGTCCAGGTTTCGAAATGTTG TCAATGAGTGCCGAAAACAGTGTCGTAAAGCACATGAATGACAAGTACAT CAATGAAAACATCCTAGAATCATCTGACACCAAGCGCTTTTACAAGTATA TCAAAGATAAACAAAAAGACAATATCACAGTTGCCCCATTAAAGAAGAAT GGGAGTCTATCATCGACGATCAGAAAAAAGAAATATCCTTAATGAACAGT ATTGTAGTGTTTTCTCTATTTGTAACAATAGATATACCACCCATTAGATC GCCAACTGTTGAGAATTCAATGTCCGAGATTGAAACAAACAAAAGTGGTG TCGAAGCGCTACTTAACCGGCTTAATCCACAGAAAGCAACAGGACCGGAT AGCATATCATCAAGATTCCTAAAGGAATTTTCAGCTGAGATTTCTTCACC CCTCACAATGATATTCAAACTGTCCCTCAAATCAGGTACCCTTCCCAAAG ACTGGTCGCATGCATTTATTGTACCTGTGTACAAAGGGGGTAACAAAGAT AAGAACCAGGCTGAAAATTATCAACCAGTTTCACTCACATCGATTTGATG CAAGTGCTTGGAACATATTATTTATAGCAATGTAATGACACACCTTAATG ACAATAATGTATTGAGTGACTACCAACATGGTTTCAGAGAAAAACGTTCA TGTATGAGTCAACTTTTAACCACCGTGAACGACTTTGCTAGGAACCTTAA TTATAAGAAACAAACAGACTCTATCTTACTGGACTTTAGCAAGGCATTTG ACAAAGTTAACCACTTCAAACTTTGTCTAAAGGCATCACACTATGGTATT CGAGGCACCACACTTAAATGGATAAAACCATTCCTATCAAACAGAATGCA ACAAGTTTTATTAAACGGGAAATCCTCAGATACGGCTAACGTTTTGTCTG GTGTACCCCAAGGCACCGTACTTGGACCACTACTATTCTTGATTTACATC AACGACATGCCATCATACGTTAAATCTAACATTCGCCTATTTGCAGATGA CGCTTACTTGTATCGCATAATTGATAGTATTGGTGACCAAATCACACTTC AAGATGACCTCACAGCACTTCAGCAATGGGAGACACTATGGGATATGGAA TTTCACCCTCAAAAGTGCAAACATCTCCCAATTACAAATAAAACCAAACC CATAGAAAGCACATGTTCTATCCATCAAACAGAGCTTGAGAAAGTATCTA ACGCCAAATACCTTGGAGTAACCCTGAACAATAAGCTCAAGTGGAACACT CATATTGACACAATATGCAAAAAGGCAAATCAAAAGAGATCTTTTCTTCA AAGGAACCTGAGGAATTGTTCACGTAAAATCAAAGCGAAAGCATTCAATA CATATGTTAGACCTATCCTGTCCTATGCATCTCCAGTGTGGAACCCAGTA TCGAGCCAAACCTTATGTGATAATCTTGAAATAGTCCAACGTAAAGGAGC CCACTTTGTTTTCTCGAATTGGTCGTGGGATGCTAGTCCTACTAGAATGT TGAATGATCTAAAATGGAAAACTTTGGAACACCAAAGAAAAGTTGATTCT GTTGCTGTATTTCATAACATAAAATCAGGAAAGTTGGAAATGCAGAGCAT TCTCCCAAAACAAGTTTGTGATAGTGTTAAATACCAGCCAATACACCGCA GAGTAATAGCATACAGAGATTCTTTTCTGCCCATAACTGTTAAATGGTGG AATGAGTTGCCAAAAGAAGTATTGAATATTGAAAATGAATTTAAAATCGA AATTTCGTCTTATTTTGACAGAAACTAGATCATATGGTATTTTTTTTTCC TTGTATCAAACTCTTGTGTTTTCTTAATCACTAACACCAGGTTGCCTTGG CCCTAGTTCAAGCTCGTTTAACACTAATTCCCAGGTCAGTATCAATTTAC GTTCTTGAAGCCTTTTCTAATTAACTCTAGTAATAATAATTAACGGAGTA ATTTCTAGTATAATTTCTAGCATTTCTAACTTTTAGTGATTTATTTTTAT TTATTTAATTTATCTTACCTTTTTATTTTGCATGAAGCTAATGAAACTTC CTATTTTGTTGCAAGTTTAGGTTAGCCTCCACCCATGTTTTTATTCTCAC TAATTTTTTAAATTTTTTGCCTATGTTCACCTTACTCTTTCTTACATCAC TCATTTTGAAGCCTTTCTCTCTGAAAGAGTCTGCTAAATTGCGTAGGTTG CGTGGGTCGTGGGTCAATATTTTTGCGTGGGTTAATATTTTTGTGTGGGT CATTTTTTGCGTGGGTGCGTGGGTCAAAATATTTTTTGCGTGGGTCAATT TTTTTGCGTGGGTCAAATCTTTTGCGTGGGTCATTTTTTTGCATGGGTCA TTATTTTCTTGCGTGGGTCAATTTTTTTTGCGTGGGTAAAAAATTTTGCG TGGGTCATATTTTTTGCGTGGGTCATATTTTTTGGGTGGGTCATAATTTT TTGCGTGAGTCATTATTTTTCGCGTGGGTCATATTTTTTGCGTGGGTCAT TATTTTTTGCGTGGGTCAAAGTTTTTGAGTGGGTCACTATTTTTTTGGTG ATTTTTTAGCTAACTCGATTTTTTTACCATATTAAAACTTTCGAGTTAGC TAAGACGTTTTTTTTATCAAATTAAAATTTTTCAAGTTATCTTATACAAA AATGTGTTGTGTATATATCTACGAAAACTAAACAAAAGCACACAGTTTTT ATGTAGTAACACCTTGTGGTTTATTTTACATAGCTTCACTTATTTACTAT AACATTATACAGAATCAACACACATCCGTCTAATTTTTGTAGACACACTT CAGGATCACACTTTTAAATTTTAGCATGCTATATTTCAGGATTCCAGTGT CATGGAAATAAACAATGTAACTTTAATTTTTTCCTCCCTTTTCTATTGCT TTGAAAAAAAGTACAGCGTCTTTATTTCGTCCAATTTTTAATGTACTTTA ATCAAAGAAATTACAAGTGGGGTGGACGAAATAATTGACAACGATTAAAT TGTTTAGTAATCCGTCGCCTAATGAATATAACTTTTGTAGAAAAATTTTC AGATTTTGTCACCATTTGCTTTGTTCTTTAACACTCAAAGCAAACCCAAA AGATTAATGCGTGCTATAAGAAGCTTTAAAGCTTCTAAAAAGATTCTATA AAGCTTCCTCTTATAAAAAGACAGCTACAGCTATGCAAAATAAACAAAAT AAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTTCGAATTACAGAGAGAATTTTGACCC ACGCAAAAATTTTGACCCACGCAAAAAATAATGACCCACGCAAAAAATAA TGACCCACGCAAAAAATATGACCCCCGCAAAAAATATGACCCACGCAAAA AATATGACCCGGGTGGTTGGGATTAGACGAGGGATGTCGATATTAGACCA AGTTACGGTACTAGACCACGAAGCCACCTGAAGCCACGGCACAGTTGTGA ATACACCTTTCCCGTAATTCAAAGTTCTCAGAAATTGCCCGGGAAAATGT GCGCTCCACTGTTGTGTATAAAATTGTTTGATAGGTAAAAGACGCGTTTT TGCCTGCAAGGGGTTAGGGAAAGTGGGATTTGAGCCTCTAACTTTTGACA GCGATCTTCTTTTGGAAAAATATTTTCAGGCTGGTATAATATCATGAATA GATTGAACATATTAAAATTTGAGGGGGTTTTGTTCGACAGAACTTAAGAA AAACTCAAAAAACCAACTTTCCCTAAGGGAACGCAGGCAAAAACGGGTTT GTTTACCTCCAGAGACCAAACGGTGGAGAGCATCAAAATAATGCGTGCGC ATTAGTTTTACAAATTACGGGAAAGGTGTTTTCACAATCTACAGAAGCAG CCACCGTGGCAAAAAGGCATTGCTATTTTGAAAATATCTAGCTGTTCTCG ATTTGCCAGCCAGGAAAATATTAAAGTCTGTCCAGATATAATTTGCAGTG GAAACAAGAATGCCTGTAACTTTTGATAGTCAAATATAATTATNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNAATAAGAAAATATAGCTTTTCTCAATGTTGACTCATAATTT TTTTCTTATTTTTTGCACAATGATGCAAAATGACAATGCCCAAAATGTGA CGGAGCCAGATTTTTAAGGAAAATTTTTTTGGGCAAATCTGGGCCAAAAA CAGCTTAAAAGGTTTTTTGGGTCTGAATGGTTTAAGTGATTCTCGTATTT GGGGACATTCCTTTTTACCATTTTACATTATTCAACACACAAGCTTTATT TTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCA TCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTCTAC TTATGCTATAACGTTCATTTTTACACCATCGGTAGTTCAACCTTAGGTTA AGAAGTTTGTTAAATTTCAAGGCAAACAGAAAAGTCCTTCGGAAGATATA GGACCCGAAATACCCCTTGGTAGCACTTTTCTGTGAAGTATCAAATCTCC AACTTATTACTTATTACCCAAAAACTTGTGTGGTCTCTCCTACTGATTGC TTCCTGGTGCTTCCTTCGCAGCTGTTTGTTAAATTTCCACCAATGAAATT GCTGCAATTCACACGACTCTTCTTTTTGGCACCTGTGACCTCTCAATGCC TTGTCTAGCATGACAGGCGGCTGTCAAATCCCAACCTTCATATATTTGTT TCAATTCGTGATACTAAGGCTTAGGTTTTTCTCATCTTCAATTTACTGAA GAAAGCAGAAGAAAGCAGGAATTTGATGCGAGAGTTAGATTGTCATCAAA GTGTCGTAAAAAATCATTGAATAAAAGAAGAACTTTAAATCTTAAATATT TTCATTTTGAAAAATTGGTGCAAAAAAATGAAACATGGAAAAGTTTTTGG TTCAATCGAAATAGGGGATCTGGAAAACTTTCTATGTATGGTTTTTTGCA CAAACCCCTAACTATGGGCAAGCACCTCTTTAATAAGATTTTGGCTCAAA ATCGAAAGTGAAACCACTGAAAATGAAATTAAAATCTGCCCGCACTCCAA ATCCCGTAACCTTGATATAGGAGTTTAGTATAGACTGTTAGTGATAGCAC TAGGCTTTTTTATAATTCAAAATTAATTTATTTTGTTCTTCTTTTTTGAA GCCGTTGACATTGCAGTGTTACTTTATATGACATCAGAATTTTTTATGAC GTATTGTTTTGAGAAGTCCCCACTCGCATCAGCCAACAGTAGGGTATTCT CTAGTGTCTGTCAGTAACGTAAATAAAGCCTGGAATACACTGGGCCAAGG TTGCTGTCAATAATTTTCTTAAGCAAAGAGTACACAAATTAATTCTAGCT TTACGATAGTGCCGCGGATCATCAGTGGATAGTATTCAATTATCATTGTC CCTTATTTTCATTTCTGGAACTTTTGCAAAAAAGGGAAAATAGAAAAGTT GTATTTTTACTGCTCTATTCACATACTGAATTTGAAAGATCTTCTATGTT GTGTTTTTTTTTGCAAATTTAAAAAAACTGATTTTTGTCCTGACTTTAGC TTAAGAGCTTGCGTGCAGCATTGGGTACAAAGTCCAAATCTGCGTTTCCT TTAAATTTAATATGAAGGGTTAGGCCGGGATACTTACGACTAACTATATA TCTGGTTTTCTAAATGTTTATAAATAGAATAAGAGCCCCTCTATTCAGTA ATTTATTAAAACTACTCTAAATAGACCCGAGTATATATCCAGGGAACTCT GAAATTCAAAAGGGTTGATTTTAGCTTCATTAAAAAAAGGTTGTAAGGTT TTAGGGTGTAAATTAGAATGTTCTCTCTTATCAGATGATACATATTTGAA AAAATGTGTTCGTGAAAATCGAATTTTTTAGCTGTGAGGGCGTAGAATCT AAATAGAATTGGCATAATAGTGTGAATTTTGGGTCAGCTTGGCTCAGCTT GGCTCAGCTCAGCTCAGCTTATAATAAATGCATTTTATACTGCACATTTT TTGCTCGTAAGTCAAGCAAATGATAAAGCACTTTTATATTATTCTTTATA GAATTGCATTTGGCAGAGTCCAAGCATGATTAGCTGATCAAAACCACCTT ATTGTTTTAGTAGAGGGCCATTTAGTTTAGTTTGTTTATTTGCAAATATA GTTTTTTTGATTTTTTCTTAACTCAGAGTATAGATTGAACATAATAGAAA TATGAGTGGAACGCCCCCAATAAACATTCAAAAGGAGACAACAACTCCTG AAAAAAGAAAAAGTGGAGGGGAGTTTGCTGTACCAAGCACCCCACCAAAA CATACCTCGCCACGTCATCATCCATATTTTCAACATCATGGATTGACAGT ACCATCTCCTATACCATGTAGAAGAACTCGAACCACATCTGTGTAAGTAT AAAGAGTATAAACAATTCAAAAGTGGGTGCTGTTGCACACTTATTAGCAG AAATTAAATGATTTAAATTGTTGATACAGTGTCGACTCTGTAAGTCTAAT TCGATATTCAAAAGACCAATTATTATATTTAAATTGGAGAGGGCTGGTTG TATATAGATATTAGACTTGTATCTACATTTTTTCTTGCCATGAGTACATA AGTCATTTTAGAGTCACAAAGCGTAATGGGTGATCAAGGCCACTGCGCGT TAATGACGACTTACTATTGGTCAAACGTTTTTGAAAATTTTTGTGTCTAG CCAACAGAGGCGCAATCAGTCTTGATTACCCATGATCCATTTTGACTTCG AAATGGCCTATAGGAGAGATGTAGAATTCATTCATTTGGAAATTTCTTTT TCTGTCGTTTATTAGGTCGAGATTAGCAGCAGACAGTCCATTACAGCAAG GAATTGTGGTCAGCTTTTGTCGTGAAAAGGGACATGGATTTGTCAAGCCA GATGATGAAGAGAAGGCAATTTTTCTACACATTTCTGAGTAAGCCTTTTA TCTTATACGTTTTAAGTATGTAAGTCTTTACCTTTTTTTCCTTTTTTCCT TGTATTCTCTCTAAGAAAATGTTATTGTTTTTTAACTTTCGATGTCTAGA TCCCGAGATATTTTAGTTTAAATATTGAAAAATTATCGATATTTTCTGCT GAGTCAGCAGTTTTCAGCATATTTACCCACTCAAACTGAATTATTTCGAG ATCTAAACACTAAAGCATAACAAACCATACCATTTTTGGATACTAAAAAC TCAGGGCTTTGCAGCCGTGGGGATTATGTTTTTCTGAAAAATGCTCTAGG AAAATGCTGACGTCATCACAAAACGCCCAAAATGTCAATTTTTCGCCTTA AAAATGCCATTTCTCGGCACCAGATGGTCGAAACTGAACAAATAACCCCA TTTTCTTTATCTAATTTTCACGCAGAATCCGTTAGTAGCATCAGATATTT GATTTTGAGACCTCAAAAAACCGTTGGTAAAGGGACCCTTGATAAGTTCT ATCCATTAACTAAAAATCGATTCACTCGAAAACTGCAGGAGATTTGAAGG GGGAATTTTTTTTATCAATTTTAGATATTATACTCCTATTAGGAACATAA CATCAAAAATTTGCCCTGATCTAAAGGGTGTCCTACGAAGTGACACAATT CACTACCTCGGCCGCTGGTCTACTTGCCAAGTGAATCATAGCACCGAGTG AGAATCGAACCCTGACCTATCAGACAGGAATCAAGGTTGATAACCACTAC ACTACCACGCCTACAGTTTTATTCTGTACATTATCTATAATTATCTTACA CTTGTTTCTATCGCTGTTTTTAATCAATGTCAATTATGTTGAATAATAAT TACATAATAATATATCTCAAATAATTCCTGATCAGAGAGTTAGTTTTAAT GAAGAAAAAAAAACAGAACTAATTCATAACCAGCGTATTCAAAATGACTT GTAATGAACTGTCTAATGACTTTTTTCACAACATAGTATCGAAGACGATT ATGTCGTCCGAAAAGGAGACCGGGTCGAGTTTAGAACCATCCCCATGCCA CCAAAAAAAGTTGAGCGCATGGCTGTCGAAGTTCATTTAATTTCATTGGA TGAAAGTGCGCCACACGAAAGATGGGACAACCAACCTGATGTGTAGATAA ACCGAATTTTCCGTAAATCTTATTAATAATAAGACTAATTTTTGTGATTC CGATAAAAGTCGGATTATCTCATGATTATTTCCGGTTATCGGATATAGTT CGTTAGGGATTTAAGGCCCTTAATTGTATGATAGGTATTAACAGTAACAT TGTGAGAAACACCATGCATTTTATGATTTTAATATTATATTAATAGGGCT TTGAGTCAAAATTGCTAAATTTTCTGTTCTATCTTCTTGGGTTTCACAAA TGAACTTTAATAAAGATGACTAGTTGGGTATAAGATATCAGAAAGTTTTC AACTCTTTATTAGGCTATTTCAG

Coding sequence (CDS) from alignment at scaffold_354:140735..158607-

>TCONS_00061152 ID=TCONS_00061152|Name=TCONS_00061152|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_354:140735..158607- (Clytia hemisphaerica)
TATCGAAGACGATTATGTCGTCCGAAAAGGAGACCGGGTCGAGTTTAGAA
CCATCCCCATGCCACCAAAAAAAGTTGAGCGCATGGCTGTCGAAGTTCAT
TTAATTTCATTGGATGAAAGTGCGCCACACGAAAGATGGGACAACCAACC
TGATGTGTAGGTCGAGATTAGCAGCAGACAGTCCATTACAGCAAGGAATT
GTGGTCAGCTTTTGTCGTGAAAAGGGACATGGATTTGTCAAGCCAGATGA
TGAAGAGAAGGCAATTTTTCTACACATTTCTGAATGAGTGGAACGCCCCC
AATAAACATTCAAAAGGAGACAACAACTCCTGAAAAAAGAAAAAGTGGAG
GGGAGTTTGCTGTACCAAGCACCCCACCAAAACATACCTCGCCACGTCAT
CATCCATATTTTCAACATCATGGATTGACAGTACCATCTCCTATACCATG
TAGAAGAACTCGAACCACATCTGTTATCGAAGACGATTATGTCGTCCGAA
AAGGAGACCGGGTCGAGTTTAGAACCATCCCCATGCCACCAAAAAAAGTT
GAGCGCATGGCTGTCGAAGTTCATTTAATTTCATTGGATGAAAGTGCGCC
ACACGAAAGATGGGACAACCAACCTGATGTGTAGGTCGAGATTAGCAGCA
GACAGTCCATTACAGCAAGGAATTGTGGTCAGCTTTTGTCGTGAAAAGGG
ACATGGATTTGTCAAGCCAGATGATGAAGAGAAGGCAATTTTTCTACACA
TTTCTGAATGAGTGGAACGCCCCCAATAAACATTCAAAAGGAGACAACAA
CTCCTGAAAAAAGAAAAAGTGGAGGGGAGTTTGCTGTACCAAGCACCCCA
CCAAAACATACCTCGCCACGTCATCATCCATATTTTCAACATCATGGATT
GACAGTACCATCTCCTATACCATGTAGAAGAACTCGAACCACATCTGTTA
TCGAAGACGATTATGTCGTCCGAAAAGGAGACCGGGTCGAGTTTAGAACC
ATCCCCATGCCACCAAAAAAAGTTGAGCGCATGGCTGTCGAAGTTCATTT
AATTTCATTGGATGAAAGTGCGCCACACGAAAGATGGGACAACCAACCTG
ATGTGTAGGTCGAGATTAGCAGCAGACAGTCCATTACAGCAAGGAATTGT
GGTCAGCTTTTGTCGTGAAAAGGGACATGGATTTGTCAAGCCAGATGATG
AAGAGAAGGCAATTTTTCTACACATTTCTGAATGAGTGGAACGCCCCCAA
TAAACATTCAAAAGGAGACAACAACTCCTGAAAAAAGAAAAAGTGGAGGG
GAGTTTGCTGTACCAAGCACCCCACCAAAACATACCTCGCCACGTCATCA
TCCATATTTTCAACATCATGGATTGACAGTACCATCTCCTATACCATGTA
GAAGAACTCGAACCACATCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038365XLOC_038365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061152-proteinTCONS_00061152-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061152-exon-scaffold_354-1575043694:158534..158607TCONS_00061152-exon-scaffold_354-1575043694:158534..158607Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1575043694:142766..142981TCONS_00061152-exon-scaffold_354-1575043694:142766..142981Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1575043694:142220..142342TCONS_00061152-exon-scaffold_354-1575043694:142220..142342Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1575043694:140735..141221TCONS_00061152-exon-scaffold_354-1575043694:140735..141221Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1510915933:158534..158607TCONS_00061152-exon-scaffold_354-1510915933:158534..158607Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1510915933:142766..142981TCONS_00061152-exon-scaffold_354-1510915933:142766..142981Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1510915933:142220..142342TCONS_00061152-exon-scaffold_354-1510915933:142220..142342Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1510915933:140735..141221TCONS_00061152-exon-scaffold_354-1510915933:140735..141221Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1491911889:158534..158607TCONS_00061152-exon-scaffold_354-1491911889:158534..158607Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1491911889:142766..142981TCONS_00061152-exon-scaffold_354-1491911889:142766..142981Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1491911889:142220..142342TCONS_00061152-exon-scaffold_354-1491911889:142220..142342Clytia hemisphaericaexon
TCONS_00061152-exon-scaffold_354-1491911889:140735..141221TCONS_00061152-exon-scaffold_354-1491911889:140735..141221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:140735..158607 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.2517 58.8789 49.471 47.0346 158.971 125.95 99.2116 99.8019 89.17 80.4404 61.38 84.8692 40.361 35.4968 44.285 42.112 65.4841 59.218 34.3298 35.8094 31.8198 36.247 45.7408 42.7624 30.8145 29.7151 36.4677 22.1645 35.9584 31.5846
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011129CSD
IPR002059CSP_DNA-bd
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00061152 vs. Swiss-Prot (Human)
Match: CHSP1 (Calcium-regulated heat-stable protein 1 OS=Homo sapiens GN=CARHSP1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.688e-26
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  238 GLTVPSPIPCRRTRTTSVSRLAADSPLQQGIVVSFCREKGHGFVKPDDEEKAIFLHISDIEDDYVVRKGDRVEFRTIPMPPKKVERMAVEVHLISLDESAPHERWDN 558
            G  VPSP+P RRTRT S +  A+  P+ +G+   FCR KGHGF+ P D    IFLHISD+E +YV  +GD V ++   +PPK  +  AVEV +  L     HE W  
Sbjct:   36 GNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSG 142          
The following BLAST results are available for this feature:
BLAST of TCONS_00061152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHSP14.688e-2645.79Calcium-regulated heat-stable protein 1 OS=Homo sa... [more]
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