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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061147 ID=TCONS_00061147|Name=TCONS_00061147|organism=Clytia hemisphaerica|type=transcript|length=2274bp
ttcttgactgtccttgtcccttatgttaaagttgttctgatggaggacat
tgctatttttggtagccttcacatatcaataaggagctttggtgtaaatg
ttttttctgacgaaatcatactaatctgaaactattaggcctttatgaac
tttctagaacaatgatcttgctccaatcttgagaaacactggaaaaatag
gttagcattccctgccataatttcacagatttcctctgctttctgcttga
aaacgctgtcttatatccgaaaacgaaagtgaaactgtgaaaacgtccgc
aaattcgggcccagtcctcttccgagacggaggctaatgcGAAATTGTAT
TATTCTTTGACGATGGGTGCTTTGTTTTTATCGGCAACTCTATCCTCGAT
TGTGATTGGTCGATATATGGATCATTATCGTAATCTTCGGAGCACGGCTC
TGGCGATGGCTTGGTTTAACATTGCTGGTAATTTAATATATTTGATACCG
GTTTTAAACTGGTTCCCAATCTTTGGTCGATTTTTATGTGGAATAGCAGA
TGGAATCAAACCAGCTTATCAAGGAGAATTAACTCGAACATACCCTTCTA
AAGAACTTTCTGTACTGGTCACAAAGATACAAACATTAACCATCATTTGC
CATGCCTTAGCCCCTGTGTCACCTATCATATTCAAATGGGTCAACTTCAA
ATTATTTGGGCATGAAATCAATCAATACAACTGTGTTGCTCTGTTTCTGG
CTGGGTGCACACTAACATACGGGGTCGCCGCTTACTTCTTGTTAACTGAT
TTGACTAAAAACCCTGGTTATCACGTTTACTTAAAAGTCAATCAAGAACT
CAGTGTAGGATCAAGAAAATCAGTATCTATATGTCAATTTAGCGGTGACA
ATATGAAAAACACTGATATATCAAACGAAGAAGTTTCAAAAGAAAGTCTA
TATTCGTCTAACAAACCAGAGGCAATAGCAAAGAAGGACCATAGTTTATA
TCCGTTTACAGAATCGGAGATAATTGGAAAGTATGACCAAGCAGAACTTC
TACCAGTAGCTAATAAACCAGAAATTGTTGATCTCAATCCGAAACCGTTA
ACACTAACAGAGCTATTGAAAAATGTGGACGTTCTAGTTCCACTGTAtgt
aatatttttaatcaatattGTTTATGCTCAATCTGAGTTAATGATTAACA
TTGTAGCTGTTAATCTATTCCATTGGAGCATCCAACATCTGAGTATTTTG
ACCATAACAGTAGTTATCATTGCAGTATTAACATTGAAATATATCGAAAG
ATTCAACACGTACATTGATGCGTATTACATGCTTGTGTTATGTACGACTG
GAAACGCACTTAATCTGACAATTATTCTTCCTTTAGCTAAGGAGTGTATT
GGAAATGACGCTTTGAGGAACGTTGCAATATTTATGACACAGTGTTTTAA
TATCCTGTTTAGCTATCCTGCAACTGCTTTTACAACTGTCATTCTCTCTG
TAGTGGTAGACCATCATTCAAGATGTTCTGTGTTAGGACTGCGACAAATG
GCAATGAAATTGGCGtgtttttttggatatttttctgCTGCTTTCTTGTT
CATTGTTATCGATAAAGCGTATATCATTTTGACATTATTTTGCTTGTCAA
CCTCATTGGTTATGTTAATTAGGAGTCGATCTTTTATTTTAAAGTATAAA
GAGTTATAAATTATGAAAAGTATTGTTTGGTGATCGATGCTGCAGATATC
ACGGGTGTCGAAACGCCCGTCATCCACCCGCGAATTGATGGATGGGTACT
GGTACTCAGTCCCTGTCGTTTTGAATTGGATAAAACGTGAAAATGAAGCG
AACAGTCAGATAAAATCTCGAAATGAAGCAAACAATGCGGTCAGGCCAGG
AATTTGTAACGTATATGGTAGCTACAATCCTAAACAGAACTGTTTGTCCA
CCTTCCCCAGTATCAATGTTGATGGTGAGGCGAGTCTGAACGTGAGATGA
ACGTGCGaaaattcaactccaacattgatTTTGGGAGGAGTTGCCGGTGG
AAAAGGGTCATGTTCGGACCGAGGTTCGGATACCACTTTTGAGAACGATA
TATCTTTTTACTTGCTGTTGTGACGAAatatattaagcagatattcgaca
agaaTTTTTCACGttaaatatatggtttatcgtTCACCAATTAGGGCGAG
ACCAATTCAATTTGTTGttcagatcgttagcaaaatatgggtcggttggt
cggtaaaataagaatgaatttttc Run BLAST on NCBI protein sequence of TCONS_00061147-protein >TCONS_00061147-protein ID=TCONS_00061147-protein|Name=TCONS_00061147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MGALFLSATLSSIVIGRYMDHYRNLRSTALAMAWFNIAGNLIYLIPVLNW
FPIFGRFLCGIADGIKPAYQGELTRTYPSKELSVLVTKIQTLTIICHALA
PVSPIIFKWVNFKLFGHEINQYNCVALFLAGCTLTYGVAAYFLLTDLTKN
PGYHVYLKVNQELSVGSRKSVSICQFSGDNMKNTDISNEEVSKESLYSSN
KPEAIAKKDHSLYPFTESEIIGKYDQAELLPVANKPEIVDLNPKPLTLTE
LLKNVDVLVPLYVIFLINIVYAQSELMINIVAVNLFHWSIQHLSILTITV
VIIAVLTLKYIERFNTYIDAYYMLVLCTTGNALNLTIILPLAKECIGNDA
LRNVAIFMTQCFNILFSYPATAFTTVILSVVVDHHSRCSVLGLRQMAMKL
ACFFGYFSAAFLFIVIDKAYIILTLFCLSTSLVMLIRSRSFILKYKEL Run BLAST on NCBI transcript from alignment at scaffold_354:104510..107300- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061147 ID=TCONS_00061147|Name=TCONS_00061147|organism=Clytia hemisphaerica|type=transcript|length=2791bp|location=Sequence derived from alignment at scaffold_354:104510..107300- (Clytia hemisphaerica)
TTCTTGACTGTCCTTGTCCCTTATGTTAAAGTTGTTCTGATGGAGGACAT
TGCTATTTTTGGTAGCCTTCACATATCAATAAGGAGCTTTGGTGTAAATG
TTTTTTCTGACGAAATCATACTAATCTGAAACTATTAGGCCTTTATGAAC
TTTCTAGAACAATGATCTTGCTCCAATCTTGAGAAACACTGGAAAAATAG
GTTAGCATTCCCTGCCATAATTTCACAGATTTCCTCTGCTTTCTGCTTGA
AAACGCTGTCTTATATCCGAAAACGAAAGTGAAACTGTGAAAACGTCCGC
AAATTCGGGCCCAGTCCTCTTCCGAGACGGAGGCTAATGCGAAATTGTAT
TATTCTTTGACGATGGGTGCTTTGTTTTTATCGGCAACTCTATCCTCGAT
TGTGATTGGTCGATATATGGATCATTATCGTAATCTTCGGAGCACGGCTC
TGGCGATGGCTTGGTTTAACATTGCTGGTAATTTAATATATTTGATACCG
GTTTTAAACTGGTTCCCAATCTTTGGTCGATTTTTATGTGGAATAGCAGA
TGGAATCAAACCAGCTTATCAAGGTTAGTCAAAAACCAAACTCGCACTCA
GGCCTTTTGTTCGCCTTTTATGATGCTCATAGTGCCACAGATTTATAAAC
CCCGAAGTGCTAGATGTCGTACTTTAAGCTCTTCCAAGTAAAAAAAAGTG
AATATCGCAAAGAATATTGCTGCTATTGTTTTTGAAAGCCCAAGGAGCAT
CTAACTGGTCAAGCACTGAACTTCTATTGTAATGTCACGTGACCTAGGTA
TAGAATTTCCTACCTAACCTTGGCATATATAACATTTTTTGAAAATTAGC
CCCCTCGGACATTGTGACTTTTGACCTCCTGGACAGCAGGTCCCCGGACA
AGCATGACACTAAAAATTACCCTCAAACAGAGCAAGTTTACCCCCCGGAC
AAGGCAAATTTTGTTGATTTTTCACAATGCGCCCGAACACTATATCCACC
AACCCCCCCCCATGTACAGACATTTTTTGGAAGAGCCCAAAAGAAAGATG
TTTAAAAACTTGATTTAATTTACAATCATTCTATTTTTAGGAGAATTAAC
TCGAACATACCCTTCTAAAGAACTTTCTGTACTGGTCACAAAGATACAAA
CATTAACCATCATTTGCCATGCCTTAGCCCCTGTGTCACCTATCATATTC
AAATGGGTCAACTTCAAATTATTTGGGCATGAAATCAATCAATACAACTG
TGTTGCTCTGTTTCTGGCTGGGTGCACACTAACATACGGGGTCGCCGCTT
ACTTCTTGTTAACTGATTTGACTAAAAACCCTGGTTATCACGTTTACTTA
AAAGTCAATCAAGAACTCAGTGTAGGATCAAGAAAATCAGTATCTATATG
TCAATTTAGCGGTGACAATATGAAAAACACTGATATATCAAACGAAGAAG
TTTCAAAAGAAAGTCTATATTCGTCTAACAAACCAGAGGCAATAGCAAAG
AAGGACCATAGTTTATATCCGTTTACAGAATCGGAGATAATTGGAAAGTA
TGACCAAGCAGAACTTCTACCAGTAGCTAATAAACCAGAAATTGTTGATC
TCAATCCGAAACCGTTAACACTAACAGAGCTATTGAAAAATGTGGACGTT
CTAGTTCCACTGTATGTAATATTTTTAATCAATATTGTTTATGCTCAATC
TGAGTTAATGATTAACATTGTAGCTGTTAATCTATTCCATTGGAGCATCC
AACATCTGAGTATTTTGACCATAACAGTAGTTATCATTGCAGTATTAACA
TTGAAATATATCGAAAGATTCAACACGTACATTGATGCGTATTACATGCT
TGTGTTATGTACGACTGGAAACGCACTTAATCTGACAATTATTCTTCCTT
TAGCTAAGGAGTGTATTGGAAATGACGCTTTGAGGAACGTTGCAATATTT
ATGACACAGTGTTTTAATATCCTGTTTAGCTATCCTGCAACTGCTTTTAC
AACTGTCATTCTCTCTGTAGTGGTAGACCATCATTCAAGATGTTCTGTGT
TAGGACTGCGACAAATGGCAATGAAATTGGCGTGTTTTTTTGGATATTTT
TCTGCTGCTTTCTTGTTCATTGTTATCGATAAAGCGTATATCATTTTGAC
ATTATTTTGCTTGTCAACCTCATTGGTTATGTTAATTAGGAGTCGATCTT
TTATTTTAAAGTATAAAGAGTTATAAATTATGAAAAGTATTGTTTGGTGA
TCGATGCTGCAGATATCACGGGTGTCGAAACGCCCGTCATCCACCCGCGA
ATTGATGGATGGGTACTGGTACTCAGTCCCTGTCGTTTTGAATTGGATAA
AACGTGAAAATGAAGCGAACAGTCAGATAAAATCTCGAAATGAAGCAAAC
AATGCGGTCAGGCCAGGAATTTGTAACGTATATGGTAGCTACAATCCTAA
ACAGAACTGTTTGTCCACCTTCCCCAGTATCAATGTTGATGGTGAGGCGA
GTCTGAACGTGAGATGAACGTGCGAAAATTCAACTCCAACATTGATTTTG
GGAGGAGTTGCCGGTGGAAAAGGGTCATGTTCGGACCGAGGTTCGGATAC
CACTTTTGAGAACGATATATCTTTTTACTTGCTGTTGTGACGAAATATAT
TAAGCAGATATTCGACAAGAATTTTTCACGTTAAATATATGGTTTATCGT
TCACCAATTAGGGCGAGACCAATTCAATTTGTTGTTCAGATCGTTAGCAA
AATATGGGTCGGTTGGTCGGTAAAATAAGAATGAATTTTTC Coding sequence (CDS) from alignment at scaffold_354:104510..107300- >TCONS_00061147 ID=TCONS_00061147|Name=TCONS_00061147|organism=Clytia hemisphaerica|type=CDS|length=2694bp|location=Sequence derived from alignment at scaffold_354:104510..107300- (Clytia hemisphaerica)
GAGAATTAACTCGAACATACCCTTCTAAAGAACTTTCTGTACTGGTCACA
AAGATACAAACATTAACCATCATTTGCCATGCCTTAGCCCCTGTGTCACC
TATCATATTCAAATGGGTCAACTTCAAATTATTTGGGCATGAAATCAATC
AATACAACTGTGTTGCTCTGTTTCTGGCTGGGTGCACACTAACATACGGG
GTCGCCGCTTACTTCTTGTTAACTGATTTGACTAAAAACCCTGGTTATCA
CGTTTACTTAAAAGTCAATCAAGAACTCAGTGTAGGATCAAGAAAATCAG
TATCTATATGTCAATTTAGCGGTGACAATATGAAAAACACTGATATATCA
AACGAAGAAGTTTCAAAAGAAAGTCTATATTCGTCTAACAAACCAGAGGC
AATAGCAAAGAAGGACCATAGTTTATATCCGTTTACAGAATCGGAGATAA
TTGGAAAGTATGACCAAGCAGAACTTCTACCAGTAGCTAATAAACCAGAA
ATTGTTGATCTCAATCCGAAACCGTTAACACTAACAGAGCTATTGAAAAA
TGTGGACGTTCTAGTTCCACTGTATGTAATATTTTTAATCAATATTGTTT
ATGCTCAATCTGAGTTAATGATTAACATTGTAGCTGTTAATCTATTCCAT
TGGAGCATCCAACATCTGAGTATTTTGACCATAACAGTAGTTATCATTGC
AGTATTAACATTGAAATATATCGAAAGATTCAACACGTACATTGATGCGT
ATTACATGCTTGTGTTATGTACGACTGGAAACGCACTTAATCTGACAATT
ATTCTTCCTTTAGCTAAGGAGTGTATTGGAAATGACGCTTTGAGGAACGT
TGCAATATTTATGACACAGTGTTTTAATATCCTGTTTAGCTATCCTGCAA
CTGCTTTTACAACTGTCATTCTCTCTGTAGTGGTAGACCATCATTCAAGA
TGTTCTGTGTTAGGACTGCGACAAATGGCAATGAAATTGGCGTGTTTTTT
TGGATATTTTTCTGCTGCTTTCTTGTTCATTGTTATCGATAAAGCGTATA
TCATTTTGACATTATTTTGCTTGTCAACCTCATTGGTTATGTTAATTAGG
AGTCGATCTTTTATTTTAAAGTATAAAGAGTTATAAATGGGTGCTTTGTT
TTTATCGGCAACTCTATCCTCGATTGTGATTGGTCGATATATGGATCATT
ATCGTAATCTTCGGAGCACGGCTCTGGCGATGGCTTGGTTTAACATTGCT
GGTAATTTAATATATTTGATACCGGTTTTAAACTGGTTCCCAATCTTTGG
TCGATTTTTATGTGGAATAGCAGATGGAATCAAACCAGCTTATCAAGGAG
AATTAACTCGAACATACCCTTCTAAAGAACTTTCTGTACTGGTCACAAAG
ATACAAACATTAACCATCATTTGCCATGCCTTAGCCCCTGTGTCACCTAT
CATATTCAAATGGGTCAACTTCAAATTATTTGGGCATGAAATCAATCAAT
ACAACTGTGTTGCTCTGTTTCTGGCTGGGTGCACACTAACATACGGGGTC
GCCGCTTACTTCTTGTTAACTGATTTGACTAAAAACCCTGGTTATCACGT
TTACTTAAAAGTCAATCAAGAACTCAGTGTAGGATCAAGAAAATCAGTAT
CTATATGTCAATTTAGCGGTGACAATATGAAAAACACTGATATATCAAAC
GAAGAAGTTTCAAAAGAAAGTCTATATTCGTCTAACAAACCAGAGGCAAT
AGCAAAGAAGGACCATAGTTTATATCCGTTTACAGAATCGGAGATAATTG
GAAAGTATGACCAAGCAGAACTTCTACCAGTAGCTAATAAACCAGAAATT
GTTGATCTCAATCCGAAACCGTTAACACTAACAGAGCTATTGAAAAATGT
GGACGTTCTAGTTCCACTGTATGTAATATTTTTAATCAATATTGTTTATG
CTCAATCTGAGTTAATGATTAACATTGTAGCTGTTAATCTATTCCATTGG
AGCATCCAACATCTGAGTATTTTGACCATAACAGTAGTTATCATTGCAGT
ATTAACATTGAAATATATCGAAAGATTCAACACGTACATTGATGCGTATT
ACATGCTTGTGTTATGTACGACTGGAAACGCACTTAATCTGACAATTATT
CTTCCTTTAGCTAAGGAGTGTATTGGAAATGACGCTTTGAGGAACGTTGC
AATATTTATGACACAGTGTTTTAATATCCTGTTTAGCTATCCTGCAACTG
CTTTTACAACTGTCATTCTCTCTGTAGTGGTAGACCATCATTCAAGATGT
TCTGTGTTAGGACTGCGACAAATGGCAATGAAATTGGCGTGTTTTTTTGG
ATATTTTTCTGCTGCTTTCTTGTTCATTGTTATCGATAAAGCGTATATCA
TTTTGACATTATTTTGCTTGTCAACCTCATTGGTTATGTTAATTAGGAGT
CGATCTTTTATTTTAAAGTATAAAGAGTTATAAATGGGTGCTTTGTTTTT
ATCGGCAACTCTATCCTCGATTGTGATTGGTCGATATATGGATCATTATC
GTAATCTTCGGAGCACGGCTCTGGCGATGGCTTGGTTTAACATTGCTGGT
AATTTAATATATTTGATACCGGTTTTAAACTGGTTCCCAATCTTTGGTCG
ATTTTTATGTGGAATAGCAGATGGAATCAAACCAGCTTATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061147-exon-scaffold_354-1575043694:106728..107300 | TCONS_00061147-exon-scaffold_354-1575043694:106728..107300 | Clytia hemisphaerica | exon |
| TCONS_00061147-exon-scaffold_354-1575043694:104510..106210 | TCONS_00061147-exon-scaffold_354-1575043694:104510..106210 | Clytia hemisphaerica | exon |
| TCONS_00061147-exon-scaffold_354-1510915933:106728..107300 | TCONS_00061147-exon-scaffold_354-1510915933:106728..107300 | Clytia hemisphaerica | exon |
| TCONS_00061147-exon-scaffold_354-1510915933:104510..106210 | TCONS_00061147-exon-scaffold_354-1510915933:104510..106210 | Clytia hemisphaerica | exon |
| TCONS_00061147-exon-scaffold_354-1491911889:106728..107300 | TCONS_00061147-exon-scaffold_354-1491911889:106728..107300 | Clytia hemisphaerica | exon |
| TCONS_00061147-exon-scaffold_354-1491911889:104510..106210 | TCONS_00061147-exon-scaffold_354-1491911889:104510..106210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:104510..107300 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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