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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061120 ID=TCONS_00061120|Name=TCONS_00061120|organism=Clytia hemisphaerica|type=transcript|length=1871bp
GTACTTATATCCGCAGTGTCCATATAAATGATGGAATCGAGACATAATTA
ATTCTTTCTCTTACTATCTCAAACGGAAGAGGTCATCATTTAAAGACACG
AGATAATTCAAGttgGACATTGATAAGCAAAAATGCCAGCCATTTCAAAT
AACTTACGAAACTACATAGAGCTGGTGGAAGAACGGAATATATCATACAG
GAAATCAGCCATCTTTTGGGATCAGGTACACAAATATGCCAATATCTCAC
TAATCATTTTGACCTCTGTTGCGACTGTCTTATCTGTAATGGAAAGTTCG
ATTCCAGTGTATGTTGTTCCGATAATCACTGGAATTGCGACGATGATTTC
AAGCATGATCGGTGTCCTTAAACCATACGAAAAACGAAATGAACAAATGG
CTTCTTCAAGGAAATTTAAGAAACTGATGTTGAATTTAATTTCAGCTGAA
AGTATTGATGATTATAAGAAAGTGAGATCTGAAATCCAAGATGCAATGTT
GGATGAACCTTTTACGAGCTCtgttaaaaaattgaagaaacagCGAGCCG
CCGAGAAAAAGGATGCAATTGGTTCGAAATCTACAGATTGTAAGATACAG
ATCGGGGGCCAAGACGAAAACGAAGTTTTCCAAAAGACAAACGcactgaa
aaatcaaaagaaaaatcaaaagaaaacagatAGACTACAATTATGGGCTT
TAAGTACTAATCTGAAAATGGAAGTTTACAAGGATGAGCagaaatggttg
aaatttaaaaaagaagaaggaatAAAGCGTACTTTTGATGATAGTGAAAG
TGTAAATGATAGCTGTGAGAATAAAGTGCTGAAAAACAGTGACGGTCGAT
CTATGGATCAGATTGATTCTGAAAGCACCACCAAATTATCGGAGGAAGAA
ATGGATTTGGCTGTAGACTTAGACAGACCATGTGCAGCACGTAGATCATT
TGACCATACAGATGGTGGTAGCATTAAACCAATGCAAATATCAACACCAA
CAAAGCTTAAAGATGTGCCAGAGAAAGAAATTCCCTTCTTGATGAATAAT
ACAACGGATACGAATCATATCAAGCCTGATCACGATTTTATGGAAATTCG
AGTGCAACCATCTGGTAAATCAAACATAGAATATAGCTCGAAGTGTTTAA
ATATACCACAGAATCCTGATGTAACTTTGGTGCCACTTACTTCGGAGAAA
CACCTAATTGGCGACCATGAAGACCATAGTCAATTATCTCGACAGAACGC
GGTAATCAGTGATCATTTGAATAACAACGATAACGAAGAATCACTCAAAA
ACAACTGAAGtactattttttatttaatttgcaTAGGTTGAAAATGTgct
attccattttatatcgATACAGGAGGATGATCGATTATTTCCAGGGGTAA
TTCGAGAAAAATTTTGCCAGGGGGTCTAAGGAAATCTTTGTTAACATTTT
TCCAGGGTGTAAGAGGCTATTCTCAAAATTCCAGTGGGTAAATGACTAAT
TTTCGTTCCGCGTCCACCTAAATtatgaagaaaaagattttcaagggTTC
TTcagcaaattttgccattttccagggggtatcatTACATtgtacatttt
gaaaaactttttttggcttaaaatggcTCGCCTatccccctgtatggaaa
ttaaAAGGAACATCCCAATTAGAAAGAGGCAACATGTTTTAATGCAATTT
TATTTGGGAACTAAACAATACTTTGATATTAAAGGACGTTTTTTGACGAT
TGTGCCAGCTGAAGTGTATGGAAGAAAACACAAAGGACCAAAGCTTTGAT
GAACAATTTATGCTCGTTAAGCTCAACAGCTTTTACATGAACACATATTC
ATTTACGTAAACAGATAGAAA Run BLAST on NCBI transcript from alignment at scaffold_354:1107362..1110983+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061120 ID=TCONS_00061120|Name=TCONS_00061120|organism=Clytia hemisphaerica|type=transcript|length=3622bp|location=Sequence derived from alignment at scaffold_354:1107362..1110983+ (Clytia hemisphaerica)
GTACTTATATCCGCAGTGTCCATATAAATGATGGAATCGAGACATAATTA
ATTCTTTCTCTTACTATCTCAAACGGAAGAGGTCATCATTTAAAGACACG
AGATAATTCAAGGTAAGTCTAAAGTTCGAAATAGACTTGTTTTTTTGGGG
GACTTGTTTCTAATTTAGAATTTTCGCTACCGAGTCTGCTTTTAACCTAT
TACAATAATGGagtctccttaattcgaataGGATTTTTGGTTCCATCACC
GTTCCATCATCAGTTACTTTACAAACACCTCCGTaactaaaaattcaatt
ttaactAAAAATCTCTCTAATAATACCTTTGAATATCATAAAACTTTACT
TTACTCTTTCAACCATGATCTTTCaccttttttatgagatttaaTACTTA
CTGTAATCCTTTAGAATTAACTTCACAGataaaatcgtcaaaaaatagGG
TGGAAAGGGTCGCAGCGATCTTTTGTCCATACCTACTGGTATAGGACCGA
AAAAAATAAGAGATATCACTTAATGGGTTAAGAGCTATTTTCTGAGAGAT
CTAGGCAAAGTGAGTAAGCGATGCCTTTAGATTtccttcatttttggata
ttttgttcCATATGACGAAAAAAGCTcctgatattttttttgaacaaTTC
ATTTCCGTTGCTGAGATATGGCCTCTATTTACTTTATGTATAAAACGgct
acacgtttcttttttataagaacatccaaaatttttgaagccttcggatg
ttcttaacctttagagttttaagcctaaaaatattcttaaaatcttctta
tttttggcttttttggggtatttttgtccatttccctaagaaattaAGTG
TTTTAGCGTCcaccaagccttaaaatgctcttaacttattgttcttaata
ttttggccagcgaagctagttttttcttatttaaaaaaacgtgtagtgcc
CTATATTTATATCTACCTACAAAGAGGCCCCCCAGcagaccctcaattca
cgcaatcacgcaattatttttcgaaattcacgcattcacgcaaattttcc
tcgagtttcacgcaataacccaatttcgggaaaaatcggggaaacattgg
aaaatcgggaacacTGCACACAATCAGtggaaaaaaggggaaaattcacg
tattcacacacaaaatagcccagattcacgcattcactgGATTTTTACGT
TCACGcatgttttttcaattcacgcattcacgcattttttttttcaattt
tcacgcattcacgcaagcgaaaatgcccattcacgcattcacgcaaaccg
ctgggggggggcNTTAACttattgttcttaatattttggccagcgaagct
agttttttcttatttaaaaaaaacgtgtagtgccCTATATTTATATTTAC
CTACAAACTTGCGATTACGAAATCTAATTTTCTAAATACACTCGCAATAG
TGTATTTTACATTTTGAAGCAATTTCTTAAAGAAGCTTTAAGGAGATGGG
TTTGACCTTATCTCGGGAGGGGGTGGGCGACCAAACCTGCAGCCTAAAaa
taggcctttgaaatcggacccttgcagtgcagagaaaattgaGCCAAATT
GAGCCAaattgagtaaatttgggcgggaaatggacccttacagtgcattt
tcttgaaagtcTTTGACTACTCCAGGTCAAAAATGgtcagtttttcaaat
tttacatcctttttcttttctttgctcatttcgacccttagtGCACTTTG
AAAAGCTTGGAAAAAgaacccttaagggccgcacatacggtaggtcgttt
accaCGAGTGCCACCCTCCCCTGGGGACTTTATATAACCGAtggattttg
ttttttcttttagttgGACATTGATAAGCAAAAATGCCAGCCATTTCAAA
TAACTTACGAAACTACATAGAGCTGGTGGAAGAACGGAATATATCATACA
GGAAATCAGCCATCTTTTGGGATCAGGTACACAAATATGCCAATATCTCA
CTAATCATTTTGACCTCTGTTGCGACTGTCTTATCTGTAATGGAAAGTTC
GATTCCAGTGTATGTTGTTCCGATAATCACTGGAATTGCGACGATGATTT
CAAGCATGATCGGTGTCCTTAAACCATACGAAAAACGAAATGAACAAATG
GCTTCTTCAAGGAAATTTAAGAAACTGATGTTGAATTTAATTTCAGCTGA
AAGTATTGATGATTATAAGAAAGTGAGATCTGAAATCCAAGATGCAATGT
TGGATGAACCTTTTACGAGCTCtgttaaaaaattgaagaaacagCGAGCC
GCCGAGAAAAAGGATGCAATTGGTTCGAAATCTACAGATTGTAAGATACA
GATCGGGGGCCAAGACGAAAACGAAGTTTTCCAAAAGACAAACGcactga
aaaatcaaaagaaaaatcaaaagaaaacagatAGACTACAATTATGGGCT
TTAAGTACTAATCTGAAAATGGAAGTTTACAAGGATGAGCagaaatggtt
gaaatttaaaaaagaagaaggaatAAAGCGTACTTTTGATGATAGTGAAA
GTGTAAATGATAGCTGTGAGAATAAAGTGCTGAAAAACAGTGACGGTCGA
TCTATGGATCAGATTGATTCTGAAAGCACCACCAAATTATCGGAGGAAGA
AATGGATTTGGCTGTAGACTTAGACAGACCATGTGCAGCACGTAGATCAT
TTGACCATACAGATGGTGGTAGCATTAAACCAATGCAAATATCAACACCA
ACAAAGCTTAAAGATGTGCCAGAGAAAGAAATTCCCTTCTTGATGAATAA
TACAACGGATACGAATCATATCAAGCCTGATCACGATTTTATGGAAATTC
GAGTGCAACCATCTGGTAAATCAAACATAGAATATAGCTCGAAGTGTTTA
AATATACCACAGAATCCTGATGTAACTTTGGTGCCACTTACTTCGGAGAA
ACACCTAATTGGCGACCATGAAGACCATAGTCAATTATCTCGACAGAACG
CGGTAATCAGTGATCATTTGAATAACAACGATAACGAAGAATCACTCAAA
AACAACTGAAGtactattttttatttaatttgcaTAGGTTGAAAATGTgc
tattccattttatatcgATACAGGAGGATGATCGATTATTTCCAGGGGTA
ATTCGAGAAAAATTTTGCCAGGGGGTCTAAGGAAATCTTTGTTAACATTT
TTCCAGGGTGTAAGAGGCTATTCTCAAAATTCCAGTGGGTAAATGACTAA
TTTTCGTTCCGCGTCCACCTAAATtatgaagaaaaagattttcaagggTT
CTTcagcaaattttgccattttccagggggtatcatTACATtgtacattt
tgaaaaactttttttggcttaaaatggcTCGCCTatccccctgtatggaa
attaaAAGGAACATCCCAATTAGAAAGAGGCAACATGTTTTAATGCAATT
TTATTTGGGAACTAAACAATACTTTGATATTAAAGGACGTTTTTTGACGA
TTGTGCCAGCTGAAGTGTATGGAAGAAAACACAAAGGACCAAAGCTTTGA
TGAACAATTTATGCTCGTTAAGCTCAACAGCTTTTACATGAACACATATT
CATTTACGTAAACAGATAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061120-exon-scaffold_354-1491911889:1107362..1107473 | TCONS_00061120-exon-scaffold_354-1491911889:1107362..1107473 | Clytia hemisphaerica | exon |
| TCONS_00061120-exon-scaffold_354-1510915933:1107362..1107473 | TCONS_00061120-exon-scaffold_354-1510915933:1107362..1107473 | Clytia hemisphaerica | exon |
| TCONS_00061120-exon-scaffold_354-1575043694:1107362..1107473 | TCONS_00061120-exon-scaffold_354-1575043694:1107362..1107473 | Clytia hemisphaerica | exon |
| TCONS_00061120-exon-scaffold_354-1491911889:1109225..1110983 | TCONS_00061120-exon-scaffold_354-1491911889:1109225..1110983 | Clytia hemisphaerica | exon |
| TCONS_00061120-exon-scaffold_354-1510915933:1109225..1110983 | TCONS_00061120-exon-scaffold_354-1510915933:1109225..1110983 | Clytia hemisphaerica | exon |
| TCONS_00061120-exon-scaffold_354-1575043694:1109225..1110983 | TCONS_00061120-exon-scaffold_354-1575043694:1109225..1110983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1107362..1110983 + |
Blast
The following BLAST results are available for this feature:
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