TCONS_00061108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061108
Unique NameTCONS_00061108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061108 ID=TCONS_00061108|Name=TCONS_00061108|organism=Clytia hemisphaerica|type=transcript|length=1868bp
ttagaaaaatatggcttcaaaaatgaaaataagagataatccaaatgaaa
attataCCTTATTTGAAATGGCGAATCTTTCATGGGAGATATTGAAAGAA
GAATGGTATGAAAGAGGACCCACTCAACATTTTCTCAGTGATTTTCAACA
AGATGTTATGAACTATTCCCAAATTACTCAAAACGATATACTGGCTGTTA
TTTTTGTTACATTCTTATTCACAATTCACAGATTTGTACTCACAAAACTC
ATCTTACGACCTATTTCAAGATATGTTGGATTCTCGCCAAAAGATGATGT
CAAATTTTCAGAAAGCTCTTGCAAACTTTTCTACTACTCCTTACTCTATG
CATTTGAATATTACCTTGTTATTTATAAGTATCCAGAATTGAGATACAAT
GTGACGTCGCACTGGGCAGATTTGACGCCAACATCTATTGTTCCCAATGA
CATTTTGGCACTCTATATTATCGAAGCTGGATTCTATTTTCACTCGATTT
ATGCAACACTTTTTGTGGATGCGTGGAAAAAAGATTCTATTGCTATGCTC
ATCCATCATGCATTGGCGAATGGACTCATTCTTTTTTCCTTGTGTTTCAG
ATACCATCGCATTGGATTGATTGTGTTGTATCTCCATGACGTTGCTGACA
TCTTTTTGGAAAGCAGTAAAATTGTCTTgtgtttcaaaaacaaattccca
aacaaagttttggaaacacttAGCATTGTTGGTTTCTTTGGATTTACGTT
TTCATGGTTTTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATTTT
CAACTGGCTTTATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATTTT
TTGTTTAACGTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGGTT
TCATTTCATTCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAAAG
GCGTTGAAGATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAGCA
CACCATGTTAAGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAGCA
GAAAGCAAGCTAAATAAGGCGCTGTTTTGGTTTGTTGGTAGTTTGGTTAA
TGTTTTGGAGGTCACACATAACATCCTCTGATTGGCTGGATTGGTGGAAT
CAATGTCATGACAATGCATCATCcattttcatgatattcatgacgtaatg
ttttctacggaaataccccggttttagccagtactGGGAactttaaacta
gacaaaagctGTATAAAATTTTCCACTATTGGCAAAAactggggtctttc
cgtagaaaacattacgtcacaaatatcatgaattcgACACTCAAATGGTA
TCATATCAGTTGAAGATTTTTGTACAAAGGAAGATGGACCAACTATAGTA
AATGTTGGTAATCTTTTGATTTAGTAATAATGATATTTGATTCTTGTTCC
ATACGCAAATTTATACCCACACATTataatacttttttttactttttcaa
atttgtataaCTTTTGTTCAGAAATGACTTATTACATAAACTGATTTGAC
CATCATCATGCTTATTGGTAGGTTAATAGATGGTTGTTTTTAGTAgaatt
attgaatttaaaaagaatttaacGACTTCATTATATTTTACGCATTTCAT
CATCTTAGCTTACTATATATTTTCTTTACTGTAGAAAAATAagatttata
tttttgaaacattAGGTCGAAAAGTAATTTGAAGACACAAAATCTTTGTG
GTCGGAAAAACAGCTATTATCGTGATTTTGGCTTCGTTTCTCGGGACTTT
TTGCGATAtaagaaattttgtgaaaaaattctgagaaattttttcgagat
tttgaTCCAAACTTGCTT
Run BLAST on NCBI

protein sequence of TCONS_00061108-protein

>TCONS_00061108-protein ID=TCONS_00061108-protein|Name=TCONS_00061108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MASKMKIRDNPNENYTLFEMANLSWEILKEEWYERGPTQHFLSDFQQDVM
NYSQITQNDILAVIFVTFLFTIHRFVLTKLILRPISRYVGFSPKDDVKFS
ESSCKLFYYSLLYAFEYYLVIYKYPELRYNVTSHWADLTPTSIVPNDILA
LYIIEAGFYFHSIYATLFVDAWKKDSIAMLIHHALANGLILFSLCFRYHR
IGLIVLYLHDVADIFLESSKIVLCFKNKFPNKVLETLSIVGFFGFTFSWF
WSRLFLYPQIVLFSTGFIARTMLPEANFYFLFNVMLWSLMCLNVWWFHFI
LALVYRIATGQTKGVEDTREYVSEKENGAAHHVKNGDATNGSANKKQKAS
Run BLAST on NCBI

transcript from alignment at scaffold_354:987989..1003307+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061108 ID=TCONS_00061108|Name=TCONS_00061108|organism=Clytia hemisphaerica|type=transcript|length=15319bp|location=Sequence derived from alignment at scaffold_354:987989..1003307+ (Clytia hemisphaerica)
ttagaaaaatatggcttcaaaaatgaaaataagagataatccaaatgaaa
attataCCTTATTTGAAATGGCGAATCTTTCATGGGAGATATTGAAAGAA
GAATGGTATGAAAGAGGACCCACTCAACATTTTCTCAGTGATTTTCAACA
AGATGTTATGAACTATTCCCAAATTACTCAAAACGATATACTGGCTGTTA
TTTTTGTTACATTCTTATTCACAATTCACAGATTTGTACTCACAAAACTC
ATCTTACGAGTAagttgaaataaaaactttgaggtttttttttaaaaata
agactgatatcgtttgcttactcatcaaattttaattcacaagctttttc
acattgaattgacacgaatgtggatcaagattggtcagaaagaggaaaag
aaaaacattttttgcttatataagcatactataacaataggcagacactg
tcctgatatgaaatatgagtttggtatgaaacgggaacacttatgtaaaa
ataaaacctttaaggtaCAGAGTTTTTACTTTATAtgaatttgaaataaa
gattGAAGGAGTCTGTTCTACCTTTggagaaatttcttttttagtcattt
ttttgggcattgctatcatTGTTATACTATATCATAATATAATGGGTTGA
GTTTTATTAAATCTCCCCTCTCACTTTCATTTTAGCCTATTTCAAGATAT
GTTGGATTCTCGCCAAAAGATGATGTCAAATTTTCAGAAAGCTCTTGCAA
ACTTTTCTACTACTCCTTACTCTATGCATTTGAATATTACCTTGTTATTT
ATAAGTATCCAGAATTGAGATACAATGTGACGTCGCACTGGGCAGGTATT
TAATGTAGCATTacatcattctttgaaaattacaattttttttgattcgA
TTTGATTTTTTACATCATTCTTGTTACACACATGTATTCTTAAAACTTGG
GAAcctgaaaatcttttatgtCAGTTCAGTCATTTCAAGGGATGAAATCT
AGTGTATAGTGTGAGAAAACACCTATGCTTAGCTTTCCTTAAGCTTGCCT
GAATCAGTTTCAGCCTTTGTAACTCTTTCTTCAAATAATCAATCGGGTAA
AATTCCATCTTCATACAATATTTACGAGAGGTACACTGCCACCGATAAat
aatttgttttcattttttactttctttcagATTTGACGCCAACATCTATT
GTTCCCAATGACATTTTGGCACTCTATATTATCGAAGCTGGATTCTATTT
TCACTCGATTTATGCAACACTTTTTGTGGATGCGTGGAAAAAAGATTCTA
TTGCTATGCTCATCCATCATGCATTGGCGAATGGACTCATTCTTTTTTCC
TTGTGTTTCAGGTATATAAATATTTAAATAgtattttgttatatttttgc
aGAAAGGAAGCCATAGTTAACTGGCGAACATGAGTCGCGATTAACTAAAT
ATTGgatgttttttctaaaatactgGCAATACCAACAAAAGCTCTTCTGG
TTTGTAACTTGGCATGGCACTTTGAACACCCAAAGACAGCTACCCTCCTT
TGAACACTACACAACAGACTGAAAAAGGGTTTTAACCGACACATCATTAA
ATCTTCCCTAccattcatgatatacaccactgcaatgtcttctgacatta
catcatggacccaatagctgattggttacaAGTAACGtacaatcagtcaa
tacgtcactttcaaccaaccAGCTGTTGGGTTCGACATTGCAACAGTGCA
TATCATAAATAGCCAAATCTGTTAGTAATTTTCAGGGGGTACAGTTGAGC
AGTCATTACGGCATTTCAATACTGTTCATATTCTCTTTTTAACCTTTCCT
TTATGAGCGGATTTAGTTGTTGCTTGCGGTATGGATGTGTCACGGGTTTG
GGTCCGCAATCAAAGGTACCTAGCAGAACACCAACAACAGATATTGATCA
CTAATCCACGTTACTAAcagcaaaagatttttttgttggTTTAAAACTCT
CATTAATAATTATATTAGTTGTCTATTTTTTTGTCAGGCtgctaaaaatt
attttatcatgATCAGGCTTTTGAATATTAATTTGAAAAGTAAGAAATCG
AAAAGTAGGGCTTTCACCGTGGCTAGAATATGTACCcgtatttttttttg
ttaattgctgttctatctctgtctccgagctttataagaacatcaagatt
gtcAGTTTATCATTGAAATGTTTCTCTGATTTTCCCtcacaaaacatttt
ttattgctagatgtctttgaatctgtacccaatagaacacttgaactaat
tttggacatattttggggtattttgaggaaacaatagttttttgtcgaaa
ttaaaattataagaattatattcaagatgacaactttcctgtaagtttga
atgataaattttgaaggtgatGGCTCGagattttcacagtattatcttga
tgtactttttcattgatttctaaaaagatttcactgaaatattgcgaGGG
CATTCAaggcactttattaattttaGAGTTCCTTCAGCCtggccattttg
tgcttgtttaaatttcttatcgTTGATCTTTCTAAAAACTAATAAGATTT
ACCATTAacgatgctacattactgatttcttgatcaacaaatagtcatca
aatacgacagagatagaacaacagaaattcagatgttattaTTCCAGCTG
CGGCTTTCTTAAACTATGTTCAAAGTACACTGACTGATAATGCCCACCAC
CGATTCAAACAACCATAACATTTTTCTTTAGATACCATCGCATTGGATTG
ATTGTGTTGTATCTCCATGACGTTGCTGACATCTTTTTGGAAAGCAGTAA
AATTGTCTTgtgtttcaaaaacaaattcccaaacaaagttttggaaacac
ttAGCATTGTTGGTTTCTTTGGATTTACGTTTTCATGGTTAGTAATATAG
ATCtattaagtaagtaagtttgcgactgCAGTCGAGGGCGAGCCTAGGCT
CCCTTCTCTATTATTATCCTTGTCGTCCAGGAGGTTAGCGTTCGATTCTC
ACTTGGTgctgtgattcacttggcaagtgaatttACCTTCGCCCAGGCCA
ATTCATGCCATTATTAGGGGaatagcataccgcagtgattctaaaaatag
acatcaaaattactgtttgtccgagttttaatcccatcatcctttgcaAC
AATTGCTTTTGTAAGTTAATtacacttattgacaatacaaaggtaataac
ttgcacgcattacgaatcataatgaaaaggattgtgggattgaatttcgg
tcaaaggttaaaagtaataattatgatgTTTGCgtagcaggggggggggg
ttggtagtaaaatctcagacataatgacgtttactacggtggtggtgtga
cgaaaaatcgaaaaaaaaaattactacccagggtagttaaatactaaaat
gggtggtatctatgtggtATCTatatttttactacctgggtagttaaaac
cgGTAAAATTATTAACTGGTataattctcgaaattttttgttaatataaa
aaagattttaattctaagggcaaaacattagattttgcactaagtgaaaa
atctgtcacagaaataatcactttttagctttttttgtaaaataagtcca
aaaatcaaccaaaaaataggtggtctccatgaaaaattgtcccaaaaact
tttactaccagggtagtaaaatacctcttccaagagtctgggtggtggta
tctAAAacttcgtaaaaatccttttactactcatatatgtctgagatttt
actatcgACCCCCCCCCTGTGCTATTGGGTGAACCAGTCAAGAAGTCTGT
CGGTGACTGCGCTAGGTGGTATCGATTCCATAATAAACCGTGGGCAAGGC
GAAAGTGCTCTGGCCTCACTAGTGGTTCACGCTGGATTAACGCACTTTAA
TCGAAAATTGTGTGTCATTTTCACAAGCTGACATGTAATATGAACCATAT
CGTAGACGGTTCTAACGAGGTGGTTCCTAAACCGCACAACATATGACCGG
ACATTCTCTGTAAAATAGAAGATACAGCAGACTCACGGTTATTCGAACCT
GCACTTATTCGAATAATCCGGTTATTCGACTTATTCGAATAATCAAGTTA
TTCGAAGTGAGATGGTGTTCCCCTTGGATCTGCTTACTCAACCCAGGTGt
aaaaacctcactttttacagttattttttcttataaataattttctactt
tttctttatttttggcaCGCGCCGTAAGCGCTCGCTTCGATGTACTTAAT
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNCTCTACGATTTACAAACGTATGACCGTTTTTTACTCGACATT
ctgagttttttattttgagaagtTTTTTCTTGTCTCGTTTTTTcttgata
tttgatattttgtgattttctctgcTGAGATTTTTCTGTGATTCTTGAGA
CCATTgctccaagattttttctttgattcttGAGACTGTTTGCTCCAAGA
TCTGTGTTTTTAGTCGTTTTTCCTTTATGCCTAGGTGGTGAAAGGGCTTT
GTTTCTGTATCTCCGGTCCATAGGATTAGGCCTGTTCAAGTATTCCTTAT
TCTTCccggttgttttttttctcctgtggGAAGAGGAGaacataaagttt
tgaattgcgATTCTGAATTTTTTCTTGACGATTTTTTTNNNNNNNNNNNN
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NNNNCATTGACcgctttaattttttgaaaaaatatttggctGGCGAAGCC
TTGGATTCGATTAAAGGTTTGACTCTAAACTCTGATAATTACAAAGAAGC
CATAGAAATATTATGCGAGAGGTATGGGAACGAGCAAGTTTTGATTTCGT
CACACATGCAATCCCTCTTGAGAATACAGAAGATAAGATCAAAAGACAAC
ATAAAGAGCCTTCGAACGCTTTACAACCACGTTGAAAGCTGTGTGCGAAA
TTTGAAAGCCTTGAAGCTCGAAGCTAAAGGTTATGGCAGTCTTTTGATCC
CTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNataccacccccaaaaatgccaaat
ttggcaattttttcactgaattcctcatttttgataccattttactgggt
acatcttattaacgaccgttcaaatgttaaatatctcaatcattttccaa
gtttgttaaaatacctttcatgccttgattgaagaaaaaattttgtgatt
tttttttacttttgaaaaaaatgttttcaatttttttgcttccggaattt
ttaaaaacctaaaattttaagtgaaaaattgaaaaatgtgctcacttagt
acaccatatcctaccaaaatcgacaattttgggcttaggcaccacccatg
ttgcagttagtccactggtggagtaactgttttcccaaaatttggtttgt
ataccaccacggtagtaattgtcatagtgtttatataataactgcatgac
ccccccctgtCGATTTGCTTTTGTTTCCTGCAACAGTGATACTTTAAGAG
TTGAGTTGCATGGATTTTGTGATAGTTCTGAGATTCTTTATTGCAGTGTT
ATTTATTTGAGAGTGATTTCCGAGACTGGGATCAGtgttttctttttgac
ttcgaAAAGTAAGGTTGCTCCTTTGAAAAAGGTGACGATTCCTAGACTTG
AACTTCTTAGTTGTGTGTTGTTGAGTGATTTGTTGAATAATGTTAGATCT
GCTCTCTCCGGTCGTATTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GAACGGACAAAGCATCAGGGGATTGATTCAACACTGGCCGACGTTCGAAG
AAGATATTGGATTGTGCAAGGAAGAAAAGCCGTGAAGAACACCATCAGAC
AATGTGTCGTATGTATTCGTTTTCAAGGTAGAACATTGCGTTCACCTCCA
ACACCGGACTTACCCGATTATAGGGTTGATTTTCACGAACGTTCATTTAA
TTCTGTTGCCATGGATTTTGCAGGTCCcctttattttagaaattttttag
aTAATGATAAAACCAAAAAGGACAGTCTGAAATGTTACATTCTTCTCCTT
ACGTGTGCTACTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNTACCGAACCAGCTCAAATGGTTGAAAACTGTGAGAAAGTAGTACAT
AATCGGGGGAGAACCAGTACGAGAAAGGCTGCAATCGAGGGACAGAACCT
GCGAAGATTAAGAAATCAATATCTTTGAAACTCTTTCATGAACTTTTATT
TCTTTGGTCGTTGAGGATGtaaaaacctcactttttacAGTTATTTTTTC
TTATAAATAATTTtctactttttctttatttttggcaCGCGCCGTAAGCG
CTCGCTTCGATGTACttaattttcttattatttgaTTGGTagtttatcac
gtgacttttgtGACTTATTCTTATTGGCTAATTTTTCACTTATAACGGCC
TCGTGTTTAGAAGGTCGCTCTCTTATTTCAGTATTTTATAGAAGATAAGG
TGCATCATGAAATTTATTGAAGATATTGTTTGAAGTGACTATCCTGATTT
TCCTGAAAGGAATTAACATAAATTTCCGTTTTTACACCAGGCAAAAACAC
TCTTGGTTGTTCGAACTTCAGTTATTTGaactttcagttattcgaagcgA
TTTCTTTTCCCATTACTTTCCCATCTGATTACATTATATCCCACGGTACA
TTATAGGCTAAATCACCCTcagttattcgaatttttcttattGGGAAATC
ATCGAGTGACAACATTGATAGTTtgcgattttattacttttttctttaag
aaaaaggTTTCAATATTGATGGCTATATATCGCTATTCAAGCAATTTTTT
TGTGTTCATTACAATCAACTAAACCGCAATGCCTCAATTACTTCAGGAAA
GTCCCTCCAATTAAGGTCAAGTTGAGAATCTTGtgggaaatgaatttttc
agttattcgaagtaaattcttatccccCTTGGAGCTTCGAATAACCAGGA
GTTTACTGTAGTTAGttttttgatgttctgtttatattttcaggtttaat
tGTCTTCCTTTTCTTACGCTCCGAAACTATATAGCTTATTCTTCTACGCA
ATTGTCAGTTCTTCTTTAActatagcctatactagacgtcacccgcgttt
tttttacgcaattaacgtctattccactttgcgactttttcgaatgtttt
gagcccgggttttcgggctctaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaaacacttgaaaggcttctatttttcga
aaatcgtcaaagtggaactcactaagaaacgagatgaaaaattccggttt
ttagtgaggtgctcgctacttTAACTATTGTTTTGTCTTTTCATCATAGG
TTTTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATTTTCAACTGG
CTTTATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATTTTTTGTTTA
ACGTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGGTTTCATTTC
ATTCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAAAGGCGTTGA
AGATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAGCACACCATG
TTAAGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAGCAGAAAGCA
AGGTAAGAGTGGATGATTTTGGATTggtaaatttttcgaaattatcTTAC
TTTTACTTTCAAATCTGGTGTTTGTCTGAAAATCTTGCGGATCACACGTT
TTGGtttagaaagaaagaagtgGCTTGTTCCCATCCATCCACGGGATATA
TCTCCAGCTGCATTCGGGGCACTAAACTAAATGGATGGAACTTGTGTGAT
ATGGTTTGGTGGTTTAGCTTAAACCCTCCCTTTCTAAGGTGCTGTGGCCT
TCTTGTAGAAACCGCAGAAAGAGGATAGAAAAATTTCGTCAGGAATGGGA
TGTCAAGAGAAAGAGGGATGCCTTTTGGATGTGGTTCCCCTTCGAAGCGG
GGATCGACAAAGGCTTTTggttattttataattttcgaTACTTTTTCACG
TTCAAAAGGAATTTTGCATAATAAATTGGGAGtactaaacatcgaccaga
aatggcgaccacgaccagcgaccacgaccggcgactagataaatttgaat
tattgagtttatctgctctctccaccgtagagaatgttaaatcaagtcct
cagaatactaaaaagtgacctttgaagtaaccagtcattttcttgacaaa
gtagTGActttatttgacaaaaatattgacagggtcattaagtatgatgt
ttgtaagctttgttacaccaaaaacttaaattatgctgaatgagatgctT
TTAGTATGCatagatagaacttgtcagtaggaaaaaattgggaaggccag
ttttagagatatgaatctaatcaattattctattgtttttatgctgacaa
aatgactaatttcgacagaaataacaatctgatgatgaaataaaGCTTGg
tagaaattgacaccataatcaagctccaagagcgttgaaatggTTGTTAT
ACGTATTTGGCACGTGGCTTTAAATAgacgagacaggggtgagcttactc
ttcaatatgATTTATATTCAAATGATTAGGAGAGACACTCTAAGTTGGAG
AAAGGGAAAAAACTCGacaacccaaatttatctggtcgctggtcgtggtc
gccggtcgtggtcgccggtcgtggtcgtcatttctggtcgacgtttagaa
actccctaaTAAATTACAATTTATCTATGTTATCAATTGTTTCTCTCTCT
TTTTGTTTAGCTAAATAAGGCGCTGTTTTGGTTTGTTGGTAGTTTGGTTA
ATGTTTTGGAGGTCACACATAACATCCTCTGATTGGCTGGATTGGTGGAA
TCAATGTCATGACAATGCATCATCcattttcatgatattcatgacgtaat
gttttctacggaaataccccggttttagccagtactGGGAactttaaact
agacaaaagctGTATAAAATTTTCCACTATTGGCAAAAactggggtcttt
ccgtagaaaacattacgtcacaaatatcatgaattcgACACTCAAATGGT
ATCATATCAGTTGAAGATTTTTGTACAAAGGAAGATGGACCAACTATAGT
AAATGTTGGTAATCTTTTGATTTAGTAATAATGATATTTGATTCTTGTTC
CATACGCAAATTTATACCCACACATTataatacttttttttactttttca
aatttgtataaCTTTTGTTCAGAAATGACTTATTACATAAACTGATTTGA
CCATCATCATGCTTATTGGTAGGTTAATAGATGGTTGTTTTTAGTAgaat
tattgaatttaaaaagaatttaacGACTTCATTATATTTTACGCATTTCA
TCATCTTAGCTTACTATATATTTTCTTTACTGTAGAAAAATAagatttat
atttttgaaacattAGGTCGAAAAGTAATTTGAAGACACAAAATCTTTGT
GGTCGGAAAAACAGCTATTATCGTGATTTTGGCTTCGTTTCTCGGGACTT
TTTGCGATAtaagaaattttgtgaaaaaattctgagaaattttttcgaga
ttttgaTCCAAACTTGCTT

Coding sequence (CDS) from alignment at scaffold_354:987989..1003307+

>TCONS_00061108 ID=TCONS_00061108|Name=TCONS_00061108|organism=Clytia hemisphaerica|type=CDS|length=6318bp|location=Sequence derived from alignment at scaffold_354:987989..1003307+ (Clytia hemisphaerica)
atggcttcaaaaatgaaaataagagataatccaaatgaaaattataCCTT
ATTTGAAATGGCGAATCTTTCATGGGAGATATTGAAAGAAGAATGGTATG
AAAGAGGACCCACTCAACATTTTCTCAGTGATTTTCAACAAGATGTTATG
AACTATTCCCAAATTACTCAAAACGATATACTGGCTGTTATTTTTGTTAC
ATTCTTATTCACAATTCACAGATTTGTACTCACAAAACTCATCTTACGAC
CTATTTCAAGATATGTTGGATTCTCGCCAAAAGATGATGTCAAATTTTCA
GAAAGCTCTTGCAAACTTTTCTACTACTCCTTACTCTATGCATTTGAATA
TTACCTTGTTATTTATAAGTATCCAGAATTGAGATACAATGTGACGTCGC
ACTGGGCAGATTTGACGCCAACATCTATTGTTCCCAATGACATTTTGGCA
CTCTATATTATCGAAGCTGGATTCTATTTTCACTCGATTTATGCAACACT
TTTTGTGGATGCGTGGAAAAAAGATTCTATTGCTATGCTCATCCATCATG
CATTGGCGAATGGACTCATTCTTTTTTCCTTGTGTTTCAGATACCATCGC
ATTGGATTGATTGTGTTGTATCTCCATGACGTTGCTGACATCTTTTTGGA
AAGCAGTAAAATTGTCTTgtgtttcaaaaacaaattcccaaacaaagttt
tggaaacacttAGCATTGTTGGTTTCTTTGGATTTACGTTTTCATGGTTT
TGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATTTTCAACTGGCTT
TATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATTTTTTGTTTAACG
TCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGGTTTCATTTCATT
CTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAAAGGCGTTGAAGA
TACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAGCACACCATGTTA
AGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAGCAGAAAGCAAGC
TAAatggcttcaaaaatgaaaataagagataatccaaatgaaaattataC
CTTATTTGAAATGGCGAATCTTTCATGGGAGATATTGAAAGAAGAATGGT
ATGAAAGAGGACCCACTCAACATTTTCTCAGTGATTTTCAACAAGATGTT
ATGAACTATTCCCAAATTACTCAAAACGATATACTGGCTGTTATTTTTGT
TACATTCTTATTCACAATTCACAGATTTGTACTCACAAAACTCATCTTAC
GACCTATTTCAAGATATGTTGGATTCTCGCCAAAAGATGATGTCAAATTT
TCAGAAAGCTCTTGCAAACTTTTCTACTACTCCTTACTCTATGCATTTGA
ATATTACCTTGTTATTTATAAGTATCCAGAATTGAGATACAATGTGACGT
CGCACTGGGCAGATTTGACGCCAACATCTATTGTTCCCAATGACATTTTG
GCACTCTATATTATCGAAGCTGGATTCTATTTTCACTCGATTTATGCAAC
ACTTTTTGTGGATGCGTGGAAAAAAGATTCTATTGCTATGCTCATCCATC
ATGCATTGGCGAATGGACTCATTCTTTTTTCCTTGTGTTTCAGATACCAT
CGCATTGGATTGATTGTGTTGTATCTCCATGACGTTGCTGACATCTTTTT
GGAAAGCAGTAAAATTGTCTTgtgtttcaaaaacaaattcccaaacaaag
ttttggaaacacttAGCATTGTTGGTTTCTTTGGATTTACGTTTTCATGG
TTTTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATTTTCAACTGG
CTTTATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATTTTTTGTTTA
ACGTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGGTTTCATTTC
ATTCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAAAGGCGTTGA
AGATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAGCACACCATG
TTAAGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAGCAGAAAGCA
AGCTAAatggcttcaaaaatgaaaataagagataatccaaatgaaaatta
taCCTTATTTGAAATGGCGAATCTTTCATGGGAGATATTGAAAGAAGAAT
GGTATGAAAGAGGACCCACTCAACATTTTCTCAGTGATTTTCAACAAGAT
GTTATGAACTATTCCCAAATTACTCAAAACGATATACTGGCTGTTATTTT
TGTTACATTCTTATTCACAATTCACAGATTTGTACTCACAAAACTCATCT
TACGACCTATTTCAAGATATGTTGGATTCTCGCCAAAAGATGATGTCAAA
TTTTCAGAAAGCTCTTGCAAACTTTTCTACTACTCCTTACTCTATGCATT
TGAATATTACCTTGTTATTTATAAGTATCCAGAATTGAGATACAATGTGA
CGTCGCACTGGGCAGATTTGACGCCAACATCTATTGTTCCCAATGACATT
TTGGCACTCTATATTATCGAAGCTGGATTCTATTTTCACTCGATTTATGC
AACACTTTTTGTGGATGCGTGGAAAAAAGATTCTATTGCTATGCTCATCC
ATCATGCATTGGCGAATGGACTCATTCTTTTTTCCTTGTGTTTCAGATAC
CATCGCATTGGATTGATTGTGTTGTATCTCCATGACGTTGCTGACATCTT
TTTGGAAAGCAGTAAAATTGTCTTgtgtttcaaaaacaaattcccaaaca
aagttttggaaacacttAGCATTGTTGGTTTCTTTGGATTTACGTTTTCA
TGGTTTTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATTTTCAAC
TGGCTTTATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATTTTTTGT
TTAACGTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGGTTTCAT
TTCATTCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAAAGGCGT
TGAAGATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAGCACACC
ATGTTAAGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAGCAGAAA
GCAAGCTAAatggcttcaaaaatgaaaataagagataatccaaatgaaaa
ttataCCTTATTTGAAATGGCGAATCTTTCATGGGAGATATTGAAAGAAG
AATGGTATGAAAGAGGACCCACTCAACATTTTCTCAGTGATTTTCAACAA
GATGTTATGAACTATTCCCAAATTACTCAAAACGATATACTGGCTGTTAT
TTTTGTTACATTCTTATTCACAATTCACAGATTTGTACTCACAAAACTCA
TCTTACGACCTATTTCAAGATATGTTGGATTCTCGCCAAAAGATGATGTC
AAATTTTCAGAAAGCTCTTGCAAACTTTTCTACTACTCCTTACTCTATGC
ATTTGAATATTACCTTGTTATTTATAAGTATCCAGAATTGAGATACAATG
TGACGTCGCACTGGGCAGATTTGACGCCAACATCTATTGTTCCCAATGAC
ATTTTGGCACTCTATATTATCGAAGCTGGATTCTATTTTCACTCGATTTA
TGCAACACTTTTTGTGGATGCGTGGAAAAAAGATTCTATTGCTATGCTCA
TCCATCATGCATTGGCGAATGGACTCATTCTTTTTTCCTTGTGTTTCAGA
TACCATCGCATTGGATTGATTGTGTTGTATCTCCATGACGTTGCTGACAT
CTTTTTGGAAAGCAGTAAAATTGTCTTgtgtttcaaaaacaaattcccaa
acaaagttttggaaacacttAGCATTGTTGGTTTCTTTGGATTTACGTTT
TCATGGTTTTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATTTTC
AACTGGCTTTATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATTTTT
TGTTTAACGTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGGTTT
CATTTCATTCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAAAGG
CGTTGAAGATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAGCAC
ACCATGTTAAGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAGCAG
AAAGCAAGCTAAatggcttcaaaaatgaaaataagagataatccaaatga
aaattataCCTTATTTGAAATGGCGAATCTTTCATGGGAGATATTGAAAG
AAGAATGGTATGAAAGAGGACCCACTCAACATTTTCTCAGTGATTTTCAA
CAAGATGTTATGAACTATTCCCAAATTACTCAAAACGATATACTGGCTGT
TATTTTTGTTACATTCTTATTCACAATTCACAGATTTGTACTCACAAAAC
TCATCTTACGACCTATTTCAAGATATGTTGGATTCTCGCCAAAAGATGAT
GTCAAATTTTCAGAAAGCTCTTGCAAACTTTTCTACTACTCCTTACTCTA
TGCATTTGAATATTACCTTGTTATTTATAAGTATCCAGAATTGAGATACA
ATGTGACGTCGCACTGGGCAGATTTGACGCCAACATCTATTGTTCCCAAT
GACATTTTGGCACTCTATATTATCGAAGCTGGATTCTATTTTCACTCGAT
TTATGCAACACTTTTTGTGGATGCGTGGAAAAAAGATTCTATTGCTATGC
TCATCCATCATGCATTGGCGAATGGACTCATTCTTTTTTCCTTGTGTTTC
AGATACCATCGCATTGGATTGATTGTGTTGTATCTCCATGACGTTGCTGA
CATCTTTTTGGAAAGCAGTAAAATTGTCTTgtgtttcaaaaacaaattcc
caaacaaagttttggaaacacttAGCATTGTTGGTTTCTTTGGATTTACG
TTTTCATGGTTTTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATT
TTCAACTGGCTTTATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATT
TTTTGTTTAACGTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGG
TTTCATTTCATTCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAA
AGGCGTTGAAGATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAG
CACACCATGTTAAGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAG
CAGAAAGCAAGCTAAatggcttcaaaaatgaaaataagagataatccaaa
tgaaaattataCCTTATTTGAAATGGCGAATCTTTCATGGGAGATATTGA
AAGAAGAATGGTATGAAAGAGGACCCACTCAACATTTTCTCAGTGATTTT
CAACAAGATGTTATGAACTATTCCCAAATTACTCAAAACGATATACTGGC
TGTTATTTTTGTTACATTCTTATTCACAATTCACAGATTTGTACTCACAA
AACTCATCTTACGACCTATTTCAAGATATGTTGGATTCTCGCCAAAAGAT
GATGTCAAATTTTCAGAAAGCTCTTGCAAACTTTTCTACTACTCCTTACT
CTATGCATTTGAATATTACCTTGTTATTTATAAGTATCCAGAATTGAGAT
ACAATGTGACGTCGCACTGGGCAGATTTGACGCCAACATCTATTGTTCCC
AATGACATTTTGGCACTCTATATTATCGAAGCTGGATTCTATTTTCACTC
GATTTATGCAACACTTTTTGTGGATGCGTGGAAAAAAGATTCTATTGCTA
TGCTCATCCATCATGCATTGGCGAATGGACTCATTCTTTTTTCCTTGTGT
TTCAGATACCATCGCATTGGATTGATTGTGTTGTATCTCCATGACGTTGC
TGACATCTTTTTGGAAAGCAGTAAAATTGTCTTgtgtttcaaaaacaaat
tcccaaacaaagttttggaaacacttAGCATTGTTGGTTTCTTTGGATTT
ACGTTTTCATGGTTTTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTT
ATTTTCAACTGGCTTTATCGCGCGAACGATGTTACCTGAAGCTAACTTCT
ATTTTTTGTTTAACGTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGG
TGGTTTCATTTCATTCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAAC
TAAAGGCGTTGAAGATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTG
CAGCACACCATGTTAAGAATGGAGATGCAACCAATGGCTCTGCTAACAAA
AAGCAGAAAGCAAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038341XLOC_038341Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061108-proteinTCONS_00061108-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061108-exon-scaffold_354-1491911889:987989..988247TCONS_00061108-exon-scaffold_354-1491911889:987989..988247Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1510915933:987989..988247TCONS_00061108-exon-scaffold_354-1510915933:987989..988247Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1575043694:987989..988247TCONS_00061108-exon-scaffold_354-1575043694:987989..988247Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1491911889:988674..988833TCONS_00061108-exon-scaffold_354-1491911889:988674..988833Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1510915933:988674..988833TCONS_00061108-exon-scaffold_354-1510915933:988674..988833Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1575043694:988674..988833TCONS_00061108-exon-scaffold_354-1575043694:988674..988833Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1491911889:989169..989349TCONS_00061108-exon-scaffold_354-1491911889:989169..989349Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1510915933:989169..989349TCONS_00061108-exon-scaffold_354-1510915933:989169..989349Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1575043694:989169..989349TCONS_00061108-exon-scaffold_354-1575043694:989169..989349Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1491911889:990770..990925TCONS_00061108-exon-scaffold_354-1491911889:990770..990925Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1510915933:990770..990925TCONS_00061108-exon-scaffold_354-1510915933:990770..990925Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1575043694:990770..990925TCONS_00061108-exon-scaffold_354-1575043694:990770..990925Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1491911889:1001038..1001340TCONS_00061108-exon-scaffold_354-1491911889:1001038..1001340Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1510915933:1001038..1001340TCONS_00061108-exon-scaffold_354-1510915933:1001038..1001340Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1575043694:1001038..1001340TCONS_00061108-exon-scaffold_354-1575043694:1001038..1001340Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1491911889:1002499..1003307TCONS_00061108-exon-scaffold_354-1491911889:1002499..1003307Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1510915933:1002499..1003307TCONS_00061108-exon-scaffold_354-1510915933:1002499..1003307Clytia hemisphaericaexon
TCONS_00061108-exon-scaffold_354-1575043694:1002499..1003307TCONS_00061108-exon-scaffold_354-1575043694:1002499..1003307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:987989..1003307 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1423	12.5624	2.51825	0.755542	9.43077	7.32905	11.2024	11.8256	10.5253	8.99923	9.11069	8.61354	9.13266	10.7352	7.78525	6.7977	11.6171	10.7228	7.29863	8.09196	13.5998	12.9877	27.9262	26.2769	5.56345	8.4334	4.69502	4.26426	18.4573	19.6612
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
IPR013599TRAM1
IPR016439Lag1/Lac1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00061108 vs. Swiss-Prot (Human)
Match: CERS1 (Ceramide synthase 1 OS=Homo sapiens GN=CERS1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.129e-42
Identity = 99/274 (36.13%), Postives = 161/274 (58.76%), Query Frame = 2 
Query:  218 FTIHRFVLTKLILRPISRYVGFSPKDDVKFSESSCKLFYYSLLYAFEYYLVIYKYPELRYNVTSHWADLTPTSIVPNDILALYIIEAGFYFHSIYATLFVDAWKKDSIAMLIHHALANGLILFSLCFRYHRIGLIVLYLHDVADIFLESSKIVLCFKNKFPN--KVLETLSIVXXXXXXXXXXXXRLFLYPQIVLFSTGFIARTMLPEANFYFLFNVMLWSLMCLNVWWFHFILALVYRIATGQTKGVEDTREY-----VSEKENGAAHHVKNG 1018
            +T  R   T  + RP+++     P+D  K  ES+ K  +Y   +++  YL+        ++  S + D TP   VP DI A Y+++  FY HSIYATL++D W+KDS+ ML+HH +   LI+ S  FRYH +G++VL+LHD++D+ LE +K+ + FK++  +  ++    + +G   F FSWFW RL+ +P  VL++T   +   +P+  FYF FN +L  L  +N++WF +I+A   ++ TGQ   ++D REY      S K + A   ++NG
Sbjct:   70 WTALRSAATARLFRPLAKRCCLQPRDAAKMPESAWKFLFYLGSWSYSAYLLFGTDYPFFHDPPSVFYDWTPGMAVPRDIAAAYLLQGSFYGHSIYATLYMDTWRKDSVVMLLHHVVTLILIVSSYAFRYHNVGILVLFLHDISDVQLEFTKLNIYFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVLYATSHCSLRTVPDIPFYFFFNALLLLLTLMNLYWFLYIVAFAAKVLTGQVHELKDLREYDTAEAQSLKPSKAEKPLRNG 343
The following BLAST results are available for this feature:
BLAST of TCONS_00061108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CERS13.129e-4236.13Ceramide synthase 1 OS=Homo sapiens GN=CERS1 PE=1 ... [more]
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