|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061051 ID=TCONS_00061051|Name=TCONS_00061051|organism=Clytia hemisphaerica|type=transcript|length=996bp
GAAATagtgaaaaaatgttttggtttCGGCTGGAGAAATTGTCCTGGAAA
ACGAGAGGCTCAAATAAATCGAGTGAAGACAGCTTCTAGACCAGTGAAAA
GTTACGAAGACCCTTCGAGGAAAAACATGCTTTGTAAATTGAGAAGGTTT
TTACAACTGGCAAAGATATACATGGAGCTGAATTCGTTATGGAACATCAA
AGCGCCCGATGAAGCAAGGAGGgacatattttgatttttgtaaaaaaaca
ttttactaaGGTTTATATTTGTGAATTACTTTCATAGTTAATTATCATAT
TTATTTAGCGAATGTTCATACGTGATAAaacctaactcaagatatcgGCA
AAACATTgatatttcagttaaaaaatCCGTCGAAAAACACGTCAAAATAA
TGGTTTCAAAAGCGTCACTATCGAAAAACACCATTCgacgtcacgcaaaa
tatgttttgttataatttgGACGTTCCTAAACTCACCCGAGTAACCCATT
CATACCATGAAAAGTATTCATTCCTTTCCTCGGTATCATTGGTGTCATTC
TAAGGTTTCTAATgaccagtggcgtggtgggaaaattttgCTAGGGTGGC
CAAGCAGAATTTGGCGCcgtttttggagatttttttgttttcggcGCCCT
CTCTCTATATACATTTAGTAGAagagtgtgcgagcgaagcgagccagtGA
AATTTTGAGGTGATAAGGGGCGcgatttttggtttttcagtTGCCAATCT
TTTGATAGGGGCGTCTGGAAAATCCTTCTTGGCGCCCCTTCTCAAAAAGG
CTCCGCTGGTGGGCCTGGCCCACCTGGCCCCCCttgccaccacgccactg
ctAATGACACCTATTTTCCTAATGGGATTTATATGTGGTGAAAGAAGATT
TATCAGGAAGAAATTCTAGATATAAAGTAAGCTGTATATATATTTTAACA
ATTTAGATAATTTTAATTTACTAATAAAAGTATATCTTCATAAAAC Run BLAST on NCBI transcript from alignment at scaffold_354:317014..319750+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061051 ID=TCONS_00061051|Name=TCONS_00061051|organism=Clytia hemisphaerica|type=transcript|length=2737bp|location=Sequence derived from alignment at scaffold_354:317014..319750+ (Clytia hemisphaerica)
GAAATagtgaaaaaatgttttggtttCGGCTGGAGAAATTGTCCTGGAAA
ACGAGAGGCTCAAATAAATCGAGTGAAGACAGCTTCTAGACCAGTGAAAA
GTTACGAAGACCCTTCGAGGAAAAACATGCTTTGTAAATGTAAGTACTCT
AAAAAAGCCAAATTCCTACCCAGACCCCTTGTtcgcttttttatgattct
gtaaGCGtcgaagatttaaaaaatggcGCAAGTGGCTCTTGTGTTGACca
aattttcatatttactTAGATCAACCGTAAAGGGATCTGGTTCGATTTCG
GTAAGGGTGATTTTACCTGTGAATCTTCGAACACAGATCGATGCATCATT
CGAATTCGAACTCGTTCAGTTTATGGAATAGGCTTGATAATTGTTACCCA
CATCATGTTTAAATTCAACGGATTTTTGTTGAATTAATTAttataagata
agataagaaaACTCTTAGATTAATTTTAGTGCTATCcctcaaacattttc
attttcttatcTTTTAGTGAGAAGGTTTTTACAACTGGCAAAGATATACA
TGGAGCTGAATTCGTTATGGAACATCAAAGCGCCCGATGAAGCAAGGAGG
gacatattttgatttttgtaaaaaaacattttactaaGGTTTATATTTGT
GAATTACTTTCATAGTTAATTATCATATTTATTTAGCGAATGTTCATACG
TGATAAaacctaactcaagatatcgGCAAAACATTgatatttcagttaaa
aaatCCGTCGNGAACTTCCACAAATCAGGACGGAATCTTTCAAACTGTAG
AAGTGGAAACCCTAAAAGTGGAATCCAGCTTCAGTATGATGTTATATTGA
TGGTCTTTAATTTATTGAAGTCTTAATTTCTGGCCAAAAATATGGCACTG
TGAAGCTATGAATAAGAAGGATTTTTCCTGCATCTTTGAAAACTGACCGC
TacagaaatttcaattttcaattttcaattttcttttcatcgCAGTGGTT
CAGCTGTTGGAGATTTTGaagaaatacaaaaaatctaaagaagatTCAAC
ATTATCAACGAGGATTACAAAAACCAATATAAACAGCCAAAGTAGTGGTG
AGTTTTTTCTTAGTTCACAACCAAATAAATGTCCAAGGAAGtgtttttta
cttttactaTAATGATTTTAAAGCTATACCAACCAGGAAACTTTTGGACT
AccttaaaattcttgaaaaatctgatGTGCTTTTTGtatggtggaaaaaa
gtgttccCAACTACTAAGCTTTAAAATAGAGGTGTATTAACATTATTAAA
TTTTTACTGAATTTTCGGTTCGTAATTTTTTCAGAACATAATGATGACAA
TATTGAAAGTAATGAAATagtgaaaaaatgttttggtttCGGCTGGAGAA
ATTGTCCTGGAAAACGAGAGGCTCAAATAAATCGAGTGAAGACAGCTTCT
AGACCAGTGAAAAGTTACGAAGACCCTTCGAGGAAAAACATGCTTTGTAA
ATGTAAGTACTCTAAAAAAGCCAAATTCCTACCCAGACCCCTTGTtcgct
tttttatgattctgtaaGCGtcgaagatttaaaaaatggcGCAAGTGGCT
CTTGTGTTGACcaaattttcatatttactTAGATCAACCGTAAAGGGATC
TGGTTCGATTTCGGTAAGGGTGATTTTACCTGTGAATCTTCGAACACAGA
TCGATGCATCATTCGAATTCGAACTCGTTCAGTTTATGGAATAGGCTTGA
TAATTGTTACCCACATCATGTTTAAATTCAACGGATTTTTGTTGAATTAA
TTAttataagataagataagaaaACTCTTAGATTAATTTTAGTGCTATCc
ctcaaacattttcattttcttatcTTTTAGTGAGAAGGTTTTTACAACTG
GCAAAGATATACATGGAGCTGAATTCGTTATGGAACATCAAAGCGCCCGA
TGAAGCAAGGAGGgacatattttgatttttgtaaaaaaacattttactaa
GGTTTATATTTGTGAATTACTTTCATAGTTAATTATCATATTTATTTAGC
GAATGTTCATACGTGATAAaacctaactcaagatatcgGCAAAACATTga
tatttcagttaaaaaatCCGTCGAAAAACACGTCAAAATAATGGTTTCAA
AAGCGTCACTATCGAAAAACACCATTCgacgtcacgcaaaatatgttttg
ttataatttgGACGTTCCTAAACTCACCCGAGTAACCCATTCATACCATG
AAAAGTATTCATTCCTTTCCTCGGTATCATTGGTGTCATTCTAAGGTTTC
TAATgaccagtggcgtggtgggaaaattttgCTAGGGTGGCCAAGCAGAA
TTTGGCGCcgtttttggagatttttttgttttcggcGCCCTCTCTCTATA
TACATTTAGTAGAagagtgtgcgagcgaagcgagccagtGAAATTTTGAG
GTGATAAGGGGCGcgatttttggtttttcagtTGCCAATCTTTTGATAGG
GGCGTCTGGAAAATCCTTCTTGGCGCCCCTTCTCAAAAAGGCTCCGCTGG
TGGGCCTGGCCCACCTGGCCCCCCttgccaccacgccactgctAATGACA
CCTATTTTCCTAATGGGATTTATATGTGGTGAAAGAAGATTTATCAGGAA
GAAATTCTAGATATAAAGTAAGCTGTATATATATTTTAACAATTTAGATA
ATTTTAATTTACTAATAAAAGTATATCTTCATAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061051-exon-scaffold_354-1491911889:317014..317152 | TCONS_00061051-exon-scaffold_354-1491911889:317014..317152 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1510915933:317014..317152 | TCONS_00061051-exon-scaffold_354-1510915933:317014..317152 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1575043694:317014..317152 | TCONS_00061051-exon-scaffold_354-1575043694:317014..317152 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1491911889:317531..317562 | TCONS_00061051-exon-scaffold_354-1491911889:317531..317562 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1510915933:317531..317562 | TCONS_00061051-exon-scaffold_354-1510915933:317531..317562 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1575043694:317531..317562 | TCONS_00061051-exon-scaffold_354-1575043694:317531..317562 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1491911889:318926..319750 | TCONS_00061051-exon-scaffold_354-1491911889:318926..319750 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1510915933:318926..319750 | TCONS_00061051-exon-scaffold_354-1510915933:318926..319750 | Clytia hemisphaerica | exon |
| TCONS_00061051-exon-scaffold_354-1575043694:318926..319750 | TCONS_00061051-exon-scaffold_354-1575043694:318926..319750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:317014..319750 + |
Blast
The following BLAST results are available for this feature:
|
