|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061034 ID=TCONS_00061034|Name=TCONS_00061034|organism=Clytia hemisphaerica|type=transcript|length=944bp
AGCTCGatagggacccctcaaagtattttttagacttggctgaaggtgta
caGCACCAAATTTCCTAATTTTCCCCTTATATCGACGATCGACTCTTACT
CGCTTTTTTAAAAACTGCTTATTCAGCAAAATCAGCGAGCCAAAAGGTGG
GCCATATAGTAGGCCAAATGGCCCGGGCCAACTAGGCGAGCCAGCTTTTG
TTTAAACCCCTTTAGTTTGGATGGTaagaaacttttcatttcagTGCTTC
CATCAAAAACACGTTCATCGTTATCATCATTAACTGGACCTAAATCTGGC
AATTCTTCGCTTTCACTGACATCTTCATCTTCCtcgtcactttcattttc
tttgtcaTTCACAATATCACTCTTCTCATTCATTTGTACATGCAAGTCTG
GTAAATCAATAAATCCGTTTTCAGGGAGTTTTTGTAGTCTTTCCATGTTT
ATGTTGATTTCACTATATAAAAAGTTATTGGGTTCACCTTTGTCATTTTT
TCCGGTTAACCATAACAATGCCTGTAATATTTTTTCACGTCGAACAACAA
GTTCTTTTGAGGTATTATTTTTCCcattaattttaaaaatcatgacaGGA
ATGTCACTGGGTTCTCTTGGAAGGACATCTGCAATTTTTTGTACATTGTG
AGGCAAATTCAAAACGTGACCTTTGTAAGCTCTCTGACCTCCTCTTGGTC
GGGTGTACACTTGCATTACAGGAAAAGCTCTAGCTATTAGCATTTCTTCA
ACTTGCGTGAGACCTTTCAATGCTTCTGGTACAGGACTTGGTTTCATATT
ATTATCAGCACTAAATTTTTTTGGAGTTCCTTTGTCTCTTTTGCAACGCG
TACAAATGTAATCATTGACTGAGTTTacttttgacgtaatttttatTGGC
CAGGATTCAAAACAGGTTTGACATTGAGCAATTGAAAACTTCAT Run BLAST on NCBI protein sequence of TCONS_00061034-protein >TCONS_00061034-protein ID=TCONS_00061034-protein|Name=TCONS_00061034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MKFSIAQCQTCFESWPIKITSKVNSVNDYICTRCKRDKGTPKKFSADNNM
KPSPVPEALKGLTQVEEMLIARAFPVMQVYTRPRGGQRAYKGHVLNLPHN
VQKIADVLPREPSDIPVMIFKINGKNNTSKELVVRREKILQALLWLTGKN
DKGEPNNFLYSEININMERLQKLPENGFIDLPDLHVQMNEKSDIVNDKEN
ESDEEDEDVSESEELPDLGPVNDDNDERVFDGSTEMKSFLPSKLKGFKQK
LARLVGPGHLAYYMAHLLAR Run BLAST on NCBI transcript from alignment at scaffold_353:11503..12446 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061034 ID=TCONS_00061034|Name=TCONS_00061034|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at scaffold_353:11503..12446 (Clytia hemisphaerica)
ATGAAGTTTTCAATTGCTCAATGTCAAACCTGTTTTGAATCCTGGCCAat
aaaaattacgtcaaaagtAAACTCAGTCAATGATTACATTTGTACGCGTT
GCAAAAGAGACAAAGGAACTCCAAAAAAATTTAGTGCTGATAATAATATG
AAACCAAGTCCTGTACCAGAAGCATTGAAAGGTCTCACGCAAGTTGAAGA
AATGCTAATAGCTAGAGCTTTTCCTGTAATGCAAGTGTACACCCGACCAA
GAGGAGGTCAGAGAGCTTACAAAGGTCACGTTTTGAATTTGCCTCACAAT
GTACAAAAAATTGCAGATGTCCTTCCAAGAGAACCCAGTGACATTCCtgt
catgatttttaaaattaatgGGAAAAATAATACCTCAAAAGAACTTGTTG
TTCGACGTGAAAAAATATTACAGGCATTGTTATGGTTAACCGGAAAAAAT
GACAAAGGTGAACCCAATAACTTTTTATATAGTGAAATCAACATAAACAT
GGAAAGACTACAAAAACTCCCTGAAAACGGATTTATTGATTTACCAGACT
TGCATGTACAAATGAATGAGAAGAGTGATATTGTGAAtgacaaagaaaat
gaaagtgacgaGGAAGATGAAGATGTCAGTGAAAGCGAAGAATTGCCAGA
TTTAGGTCCAGTTAATGATGATAACGATGAACGTGTTTTTGATGGAAGCA
ctgaaatgaaaagtttcttACCATCCAAACTAAAGGGGTTTAAACAAAAG
CTGGCTCGCCTAGTTGGCCCGGGCCATTTGGCCTACTATATGGCCCACCT
TTTGGCTCGCTGATTTTGCTGAATAAGCAGTTTTTAAAAAAGCGAGTAAG
AGTCGATCGTCGATATAAGGGGAAAATTAGGAAATTTGGTGCtgtacacc
ttcagccaagtctaaaaaatactttgaggggtccctatCGAGCT Coding sequence (CDS) from alignment at scaffold_353:11503..12446 >TCONS_00061034 ID=TCONS_00061034|Name=TCONS_00061034|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_353:11503..12446 (Clytia hemisphaerica)
ATGAAGTTTTCAATTGCTCAATGTCAAACCTGTTTTGAATCCTGGCCAat
aaaaattacgtcaaaagtAAACTCAGTCAATGATTACATTTGTACGCGTT
GCAAAAGAGACAAAGGAACTCCAAAAAAATTTAGTGCTGATAATAATATG
AAACCAAGTCCTGTACCAGAAGCATTGAAAGGTCTCACGCAAGTTGAAGA
AATGCTAATAGCTAGAGCTTTTCCTGTAATGCAAGTGTACACCCGACCAA
GAGGAGGTCAGAGAGCTTACAAAGGTCACGTTTTGAATTTGCCTCACAAT
GTACAAAAAATTGCAGATGTCCTTCCAAGAGAACCCAGTGACATTCCtgt
catgatttttaaaattaatgGGAAAAATAATACCTCAAAAGAACTTGTTG
TTCGACGTGAAAAAATATTACAGGCATTGTTATGGTTAACCGGAAAAAAT
GACAAAGGTGAACCCAATAACTTTTTATATAGTGAAATCAACATAAACAT
GGAAAGACTACAAAAACTCCCTGAAAACGGATTTATTGATTTACCAGACT
TGCATGTACAAATGAATGAGAAGAGTGATATTGTGAAtgacaaagaaaat
gaaagtgacgaGGAAGATGAAGATGTCAGTGAAAGCGAAGAATTGCCAGA
TTTAGGTCCAGTTAATGATGATAACGATGAACGTGTTTTTGATGGAAGCA
ctgaaatgaaaagtttcttACCATCCAAACTAAAGGGGTTTAAACAAAAG
CTGGCTCGCCTAGTTGGCCCGGGCCATTTGGCCTACTATATGGCCCACCT
TTTGGCTCGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061034-exon-scaffold_353-1491911889:11503..12446 | TCONS_00061034-exon-scaffold_353-1491911889:11503..12446 | Clytia hemisphaerica | exon |
| TCONS_00061034-exon-scaffold_353-1510915933:11503..12446 | TCONS_00061034-exon-scaffold_353-1510915933:11503..12446 | Clytia hemisphaerica | exon |
| TCONS_00061034-exon-scaffold_353-1575043694:11503..12446 | TCONS_00061034-exon-scaffold_353-1575043694:11503..12446 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_353 | supercontig | scaffold_353:11503..12446 . |
Blast
The following BLAST results are available for this feature:
|
