TCONS_00061022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061022
Unique NameTCONS_00061022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061022 ID=TCONS_00061022|Name=TCONS_00061022|organism=Clytia hemisphaerica|type=transcript|length=557bp
AAAGCAGGAAATGAGAAACTGTCGTTTTCCCCAAAAAAGTgcaataaaaa
ttatatttcagtAAATTTAATCGTATATAAAATTATTAAAAGGTCTATAC
AAaacgaaaaatctttaaaatatatttcttagaataaatacaaaaatata
caaatagagtagaaaaaattacaatattttgaaaatatgtaaaattgcaa
aaaaaatcatcttaTTATCATCTTAGAATTATCACAGAAAATATATAAAG
GGATAAAATAGTGTGAGATCTTTTGTCTTTAGATTCCTTCAATGGTCCTA
AACGAAACCTCTAAATCTTTTTGTCCAACTCTTTGCAAAATATCGAGAaa
taacaatttgaaatttctaaaaatgggtTCTTACGCGGTTCTTAAATTAG
AATTatactagccgtcccggcgtcgtccgagacgactcttTAACATGATT
attacgctcgcttcgctcgctttcaCTTTAGAAATTACACATATTTTGTT
TACTTATGCGAAATATGTTTTAGTAATgtaaaaggaaaatttctacgAAC
AGTTAGT
Run BLAST on NCBI

transcript from alignment at scaffold_352:96647..97203

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061022 ID=TCONS_00061022|Name=TCONS_00061022|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at scaffold_352:96647..97203 (Clytia hemisphaerica)
ACTAACTGTTcgtagaaattttccttttacATTACTAAAACATATTTCGC
ATAAGTAAACAAAATATGTGTAATTTCTAAAGtgaaagcgagcgaagcga
gcgtaatAATCATGTTAaagagtcgtctcggacgacgccgggacggctag
tatAATTCTAATTTAAGAACCGCGTAAGAacccatttttagaaatttcaa
attgttattTCTCGATATTTTGCAAAGAGTTGGACAAAAAGATTTAGAGG
TTTCGTTTAGGACCATTGAAGGAATCTAAAGACAAAAGATCTCACACTAT
TTTATCCCTTTATATATTTTCTGTGATAATTCTAAGATGATAAtaagatg
attttttttgcaattttacatattttcaaaatattgtaattttttctact
ctatttgtatatttttgtatttattctaagaaatatattttaaagatttt
tcgttTTGTATAGACCTTTTAATAATTTTATATACGATTAAATTTactga
aatataatttttattgcACTTTTTTGGGGAAAACGACAGTTTCTCATTTC
CTGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038306XLOC_038306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061022-exon-scaffold_352-1491911889:96647..97203TCONS_00061022-exon-scaffold_352-1491911889:96647..97203Clytia hemisphaericaexon
TCONS_00061022-exon-scaffold_352-1510915933:96647..97203TCONS_00061022-exon-scaffold_352-1510915933:96647..97203Clytia hemisphaericaexon
TCONS_00061022-exon-scaffold_352-1575043694:96647..97203TCONS_00061022-exon-scaffold_352-1575043694:96647..97203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:96647..97203 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73311	1.09356	2.3086	3.2437	4.67439	1.52096	1.83498	1.22706	2.11251	2.66031	1.65258	2.14548	5.15296	3.82229	0.810448	1.24248	4.97456	3.6868	6.39398	6.2795	11.4268	12.6885	7.13035	7.65151	6.40835	8.79186	15.5167	13.1109	15.7284	11.1778
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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