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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061020 ID=TCONS_00061020|Name=TCONS_00061020|organism=Clytia hemisphaerica|type=transcript|length=1170bp
CTAAAGTTAGGGTATGATTTTCcaaacgaaaaataaaaaataatcatcaa
TGAATATTCCTCACATAAAAATATATTACATCAATTGATCAGAATAAAAC
AAGAAATTCatatcaaaataaatacaaaactaTTACAAATTATACTTGAT
AATAATTCGAATTAGGCAAAATAAAAATTGTCAAGGTTATTTGCCAGACT
CAACTCTCTATCAAAGACTATTGTCAAATTAAAAGGTTAGAAGTTATCAA
TATTCAAAAGTGCTTTCaagatttataaaaaatatcccccataaaaactg
aaaaaaaaacatgattaTTATATGAGATCGCATATAATTCTATTTTGACA
AGAACTTTTCAATTCCAGCTCTCAAATCACTTATGGCTTGTCTACGGTCA
GGGTTTTTGACAACTGCTGTACCAGACACAATCATATTGGCACCTGCTTG
ACCTAcaacttcaatatttttgggtccAACACCACCGTCCACCTCAATAT
CAATAAGAGGGAATTTCTCACGTAATAATTCAACTTTTGGCATCATGTCC
GTCATAAATTTTTGGCCACCAAAACCTGGTTCAACAGTCATAATCAAAAC
CATATCAACATCAGACATGTATTCTAAAATGGTTGCAACATCTGTTTTAG
GCTTAACACCAAGCCCAACTTTCATTCCAGCTTCTTTAATTTTACGAATA
ACAGTTCCCGGTTCATTTGTCGCCTCAATATGAAATGTATATTGGTCAGC
TCCTGCATCAGCCATGTCCTTAATCCAATCCAATGGATTTGCGACCATCA
TGTGCATATCAAAAAAAGCTTTCTCAATTTTACTACGTAAACACTTAACC
ACAGGAGCACCAAAGGTAAGATTTGGAACAAAATGTCCATCCATGACATC
TAAGTGTAAATAATCTGCACCACATTGCAATAAATTTTCACATTCATATG
TGAGATCAGAAAGATCAGCATTAAGAATTGAAGGTCCAATTTTACAAACA
GGAGCTTTGCAACTcattttttggttgaaattttgttACTTGAGGTTATT
AAATATTGATAACTAAAAAATTTGTTTCCAAATACACATATAATATGATA
TTATTCattcactttttcaaaaaagtccatTCAATCATGCAGTCCGTTCA
GTTTTGATAATAAACATTGC Run BLAST on NCBI protein sequence of TCONS_00061020-protein >TCONS_00061020-protein ID=TCONS_00061020-protein|Name=TCONS_00061020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MSCKAPVCKIGPSILNADLSDLTYECENLLQCGADYLHLDVMDGHFVPNL
TFGAPVVKCLRSKIEKAFFDMHMMVANPLDWIKDMADAGADQYTFHIEAT
NEPGTVIRKIKEAGMKVGLGVKPKTDVATILEYMSDVDMVLIMTVEPGFG
GQKFMTDMMPKVELLREKFPLIDIEVDGGVGPKNIEVVGQAGANMIVSGT
AVVKNPDRRQAISDLRAGIEKFLSK Run BLAST on NCBI transcript from alignment at scaffold_352:76998..78167 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061020 ID=TCONS_00061020|Name=TCONS_00061020|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at scaffold_352:76998..78167 (Clytia hemisphaerica)
GCAATGTTTATTATCAAAACTGAACGGACTGCATGATTGAatggactttt
ttgaaaaagtgaatGAATAATATCATATTATATGTGTATTTGGAAACAAA
TTTTTTAGTTATCAATATTTAATAACCTCAAGTaacaaaatttcaaccaa
aaaatgAGTTGCAAAGCTCCTGTTTGTAAAATTGGACCTTCAATTCTTAA
TGCTGATCTTTCTGATCTCACATATGAATGTGAAAATTTATTGCAATGTG
GTGCAGATTATTTACACTTAGATGTCATGGATGGACATTTTGTTCCAAAT
CTTACCTTTGGTGCTCCTGTGGTTAAGTGTTTACGTAGTAAAATTGAGAA
AGCTTTTTTTGATATGCACATGATGGTCGCAAATCCATTGGATTGGATTA
AGGACATGGCTGATGCAGGAGCTGACCAATATACATTTCATATTGAGGCG
ACAAATGAACCGGGAACTGTTATTCGTAAAATTAAAGAAGCTGGAATGAA
AGTTGGGCTTGGTGTTAAGCCTAAAACAGATGTTGCAACCATTTTAGAAT
ACATGTCTGATGTTGATATGGTTTTGATTATGACTGTTGAACCAGGTTTT
GGTGGCCAAAAATTTATGACGGACATGATGCCAAAAGTTGAATTATTACG
TGAGAAATTCCCTCTTATTGATATTGAGGTGGACGGTGGTGTTggaccca
aaaatattgaagttgTAGGTCAAGCAGGTGCCAATATGATTGTGTCTGGT
ACAGCAGTTGTCAAAAACCCTGACCGTAGACAAGCCATAAGTGATTTGAG
AGCTGGAATTGAAAAGTTCTTGTCAAAATAGAATTATATGCGATCTCATA
TAAtaatcatgtttttttttcagtttttatgggggatattttttataaat
cttGAAAGCACTTTTGAATATTGATAACTTCTAACCTTTTAATTTGACAA
TAGTCTTTGATAGAGAGTTGAGTCTGGCAAATAACCTTGACAATTTTTAT
TTTGCCTAATTCGAATTATTATCAAGTATAATTTGTAAtagttttgtatt
tattttgatatGAATTTCTTGTTTTATTCTGATCAATTGATGTAATATAT
TTTTATGTGAGGAATATTCAttgatgattattttttatttttcgtttgGA
AAATCATACCCTAACTTTAG Coding sequence (CDS) from alignment at scaffold_352:76998..78167 >TCONS_00061020 ID=TCONS_00061020|Name=TCONS_00061020|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_352:76998..78167 (Clytia hemisphaerica)
atgAGTTGCAAAGCTCCTGTTTGTAAAATTGGACCTTCAATTCTTAATGC
TGATCTTTCTGATCTCACATATGAATGTGAAAATTTATTGCAATGTGGTG
CAGATTATTTACACTTAGATGTCATGGATGGACATTTTGTTCCAAATCTT
ACCTTTGGTGCTCCTGTGGTTAAGTGTTTACGTAGTAAAATTGAGAAAGC
TTTTTTTGATATGCACATGATGGTCGCAAATCCATTGGATTGGATTAAGG
ACATGGCTGATGCAGGAGCTGACCAATATACATTTCATATTGAGGCGACA
AATGAACCGGGAACTGTTATTCGTAAAATTAAAGAAGCTGGAATGAAAGT
TGGGCTTGGTGTTAAGCCTAAAACAGATGTTGCAACCATTTTAGAATACA
TGTCTGATGTTGATATGGTTTTGATTATGACTGTTGAACCAGGTTTTGGT
GGCCAAAAATTTATGACGGACATGATGCCAAAAGTTGAATTATTACGTGA
GAAATTCCCTCTTATTGATATTGAGGTGGACGGTGGTGTTggacccaaaa
atattgaagttgTAGGTCAAGCAGGTGCCAATATGATTGTGTCTGGTACA
GCAGTTGTCAAAAACCCTGACCGTAGACAAGCCATAAGTGATTTGAGAGC
TGGAATTGAAAAGTTCTTGTCAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061020-exon-scaffold_352-1491911889:76998..78167 | TCONS_00061020-exon-scaffold_352-1491911889:76998..78167 | Clytia hemisphaerica | exon |
| TCONS_00061020-exon-scaffold_352-1510915933:76998..78167 | TCONS_00061020-exon-scaffold_352-1510915933:76998..78167 | Clytia hemisphaerica | exon |
| TCONS_00061020-exon-scaffold_352-1575043694:76998..78167 | TCONS_00061020-exon-scaffold_352-1575043694:76998..78167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_352 | supercontig | scaffold_352:76998..78167 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
| GO:0006098 | pentose-phosphate shunt |
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives |
| GO:0004750 | ribulose-phosphate 3-epimerase activity |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| biological_process |
GO:0008152 |
metabolic process |
| biological_process |
GO:0006098 |
pentose-phosphate shunt |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0016857 |
racemase and epimerase activity, acting on carbohydrates and derivatives |
| molecular_function |
GO:0004750 |
ribulose-phosphate 3-epimerase activity |
Blast
BLAST of TCONS_00061020 vs. Swiss-Prot (Human)
Match: RPE (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 1.717e-91 Identity = 130/210 (61.90%), Postives = 162/210 (77.14%), Query Frame = -1
Query: 370 CKIGPSILNADLSDLTYECENLLQCGADYLHLDVMDGHFVPNLTFGAPVVKCLRSKI-EKAFFDMHMMVANPLDWIKDMADAGADQYTFHIEATNEPGTVIRKIKEAGMKVGLGVKPKTDVATILEYMSDVDMVLIMTVEPGFGGQKFMTDMMPKVELLREKFPLIDIEVDGGVGPKNIEVVGQAGANMIVSGTAVVKNPDRRQAISDLR 996
CKIGPSILN+DL++L EC +L GADYLHLDVMDGHFVPN+TFG PVV+ LR ++ + FFDMHMMV+ P W+K MA AGA+QYTFH+EAT PG +I+ I+E GMKVGL +KP T V + + + +DM L+MTVEPGFGGQKFM DMMPKV LR +FP +DIEVDGGVGP + +AGANMIVSG+A++++ D R I+ LR
Sbjct: 5 CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLR 214
The following BLAST results are available for this feature:
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