TCONS_00061015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061015
Unique NameTCONS_00061015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061015 ID=TCONS_00061015|Name=TCONS_00061015|organism=Clytia hemisphaerica|type=transcript|length=2646bp
cTAATTTTCCGGTGAAGGGGTGACAAATAATTTACCAAGTTATTTTTCAG
AAGCAATAGTTTCCTTAAAATTAAAACGCCTTCCCATTCTGAGGGCCGCC
TGCTCTAATTCTTTGATTGAAGCATCGAAACTTGCTGTGGAAGACAGTGC
GTGTATTATATCTTCGtttaatgattttcaaattctctGTTCGTCCAAGC
CAAAGCTGTTCCAAAATATCAAACTGAAATTTTTATATTCTCATTTTATT
ATTATCAAATGAAGTCGATGTGTTTTATTTCAATACTAATAGTTTCACGC
CGTGGTGACAATCgccagttgaaaataaaatttaaaaaaactagagTTCG
TTATATTCTCATTAtagattttattcaaaaaattattcttaaaaatcCTG
ATTGAATCAGGTTCAATAATCacaaaaaatagccaaaaattaATACGATA
GacataaaattcaaattaacaTTATGGAGAACTGAATCAAAATACGGTCC
TTCAAATTTCTCTCCGTAAAAGAATACAAAGTTCTTGCTGTGTATAAGCT
AAGTCCCTTAGCTCGCCTTTTGATGATTCTAATAGTGATCAGGATTGTAT
CACGTtcatcagtaaaataaaaaagtgataCCAGTGGCTCTGGTTAAAga
gattcatgatattcatgacgtaatgttttctacggaaatgcccccgtttt
agccagtagtggcaaatttaaactagacaaaaaagTTGTTGCTGTGTATA
AGAATAATATGATATTCGTGAGCAAACTCGAATCTAGTCCCTTAGCTCGC
CTTTTGATGATTATGATAGCGCTCAGGattgtatcacgtccatcagtaaa
ataaaaaagttgtgcaagtggctctgggtacgagattggtTCGTAAAAAG
ATTGTTAGATATTTTCTCTACGCCAAGCTAATAATAAAACTGGAATTATT
TCGGCAATTGTTTATCGTCTTGTGTATTGTTAAAGtctttttaattagtt
ttttacgTTGTAGCTCTTCTATAAGCTTTTTCCACTCGCCTTTTTCTACA
TGCACTCTTGTAAAATCGTGATAGGGACAAGATGTGTGTCAGGAGAAAAT
CGTTCTTAACTTTTGGAAGCTTTTCAAGTATTTAGTTCTAATCATTTTGG
GATTTTTGCATATCGTGCATTTGTTTGTGGCGAGATAATTTTCGTAGAGA
TATTATATGATgaattttgtaagtattttgtATTTTAGATTCTTCTCTAA
TTTTCTTTTAGATTTTGACTATTTTCTGCATTTAACTTGTATTCTTGTGA
TTTCGTCAATAGTAATTTTGTAGTAAGGTTTTGCTAGTTTTTCCTTTATG
TACTTGTTTCTAAACTagttttgtgtttactttcTAGCTGTAAATATACT
GTCAAACCGTGACCGTTTTATTGTCCAGAATTCGTCTTCACCCAAACAAA
ACAGGAATGTTAATGGTAACAGATGACGACGGAGAATTTCGTTTTCGTNT
TCACCCAAACCAAACAGGAATGTTAATGGTAACAGATGACGACGGAGaat
ttcgttttcgtttttgaGTTATTCCGATCGCAGAAATGATGTGTTGTACA
GTGTCTCCATAAATCGCACACGCGAGGGGAagacaaatttgttcgagtta
aggaaaattCGAATCAAGTAAATTTCGAGCTAAGGAAATTTTGACTAATG
GAATAAGGTTTACAcggtattgttaactgaagggaccacaCAACACTTGT
tccagttaaggagacattcgagttatagagactccactatATACTTCAAT
ATACTTCAACTATCGTGCAATAATTCCGTGAATTTTATTCCTGCAAACAT
TACAAAACTGGAAGTGGTAAAACCTCAAGAAGAAGAAAGCCAAAACAAAA
ACACACCCTATTTCCTTTTAGATTAttcttgtttaaaaaaagcCGCAAGC
AATACAAAATGTTTTTAGGTTCCTTTTTATTAGGACGAAGTTTTTGTTTT
GTCGTTCTTTACAGTTTTAATGAAACAACAATAGACTTAACCAAAAAGAA
AGGGTGTCGGCCTTATTCAATTGTCTAACACACCCTAAAACCCTATGCTA
CACATACAACATGAATTATTCAAAATGCACATCCATCGGAAGAAACACCC
CCATGTGTGGAAGTATGGAAATATGATTTCTAGATAAGGAATATTCCGTA
CCAATAGTTCAAATAATTATCCagcaaaactactttaaactcaTTATTTA
GTCTAAAAAAAACAGGTAATTACAACCATCCACGATCCAGATCTGAAAAA
CACATTGAGTTTATAGAAAGCTATCCTTTTTTTTCTTGGTAGCTTTGACT
CCAGCTTAACCCAGAGAAAGTACCTTATATCTAACCAGTTTTAAGTCAAA
TAAACCGCATTTCAACAGTTATCACTGATCCAGGAACGTCGAATTTGCTT
GATTATGATGGTCGGTGTTTTCGGCGCACGTGAAGTTTAAGATATTTATC
ATCAAACAGACTTAAAACATAACTTTGACGTTGGATTGGCGTCCTTCAGC
CATGAGTGATTCAATTTCTTCGACAGTCCTGGGAACATTGGTCATCAGTT
CACACCCTTCCTCTGTCACCGCTATGTCGTCTTCGATTCTCACCTG
Run BLAST on NCBI

transcript from alignment at scaffold_352:110402..114371-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061015 ID=TCONS_00061015|Name=TCONS_00061015|organism=Clytia hemisphaerica|type=transcript|length=3970bp|location=Sequence derived from alignment at scaffold_352:110402..114371- (Clytia hemisphaerica)
CTAATTTTCCGGTGAAGGGGTGACAAATAATTTACCAAGTTATTTTTCAG
AAGCAATAGTTTCCTTAAAATTAAAACGCCTTCCCATTCTGAGGGCCGCC
TGCTCTAATTCTTTGATTGAAGCATCGAAACTTGCTGTGGAAGACAGTGC
GTGTATTATATCTTCGTTTAATGATTTTCAAATTCTCTGTTCGTCCAAGC
CAAAGCTGTTCCAAAATATCAAACTGAAATTTTTATATTCTCATTTTATT
ATTATCAAATGAAGTCGATGTGTTTTATTTCAATACTAATAGTTTCACGC
CGTGGTGACAATCGCCAGTTGAAAATAAAATTTAAAAAAACTAGAGTTCG
TTATATTCTCATTATAGATTTTATTCAAAAAATTATTCTTAAAAATCCTG
ATTGAATCAGGTTCAATAATCACAAAAAATAGCCAAAAATTAATACGATA
GACATAAAATTCAAATTAACATTATGGAGAACTGAATCAAAATACGGTCC
TTCAAATTTCTCTCCGTAAAAGAATACAAAGTTCTTGCTGTGTATAAGCT
AAGTCCCTTAGCTCGCCTTTTGATGATTCTAATAGTGATCAGGATTGTAT
CACGTTCATCAGTAAAATAAAAAAGTGATACCAGTGGCTCTGGTTAAAGA
GATTCATGATATTCATGACGTAATGTTTTCTACGGAAATGCCCCCGTTTT
AGCCAGTAGTGGCAAATTTAAACTAGACAAAAAAGTTGTTGCTGTGTATA
AGAATAATATGATATTCGTGAGCAAACTCGAATCTAGTCCCTTAGCTCGC
CTTTTGATGATTATGATAGCGCTCAGGATTGTATCACGTCCATCAGTAAA
ATAAAAAAGTTGTGCAAGTGGCTCTGGGTACGAGATTGGTTCGTAAAAAG
ATTGTTAGATATTTTCTCTACGCCAAGCTAATAATAAAACTGGAATTATT
TCGGCAATTGTTTATCGTCTTGTGTATTGTTAAAGTCTTTTTAATTAGTT
TTTTACGTTGTAGCTCTTCTATAAGCTTTTTCCACTCGCCTTTTTCTACA
TGCACTCTTGTAAAATCGTGATAGGGACAAGATGTGTGTCAGGAGAAAAT
CGTTCTTAACTTTTGGAAGCTTTTCAAGTATTTAGTTCTAATCATTTTGG
GATTTTTGCATATCGTGCATTTGTTTGTGGCGAGATAATTTTCGTAGAGA
TATTATATGATGAATTTTGTAAGTATTTTGTATTTTAGATTCTTCTCTAA
TTTTCTTTTAGATTTTGACTATTTTCTGCATTTAACTTGTATTCTTGTGA
TTTCGTCAATAGTAATTTTGTAGTAAGGTTTTGCTAGTTTTTCCTTTATG
TACTTGTTTCTAAACTAGTTTTGTGTTTACTTTCTAGCTGTAAATATACT
GTCAAACCGTGACCGTTTTATTGTCCAGAATTCGTCTTCACCCAAACAAA
ACAGGAATGTTAATGGTAACAGATGACGACGGAGAATTTCGTTTTCGTNT
TCACCCAAACCAAACAGGAATGTTAATGGTAACAGATGACGACGGAGAAT
TTCGTTTTCGTTTTTGAGTTATTCCGATCGCAGAAATGATGTGTTGTACA
GTGTCTCCATAAATCGCACACGCGAGGGGAAGACAAATTTGTTCGAGTTA
AGGAAAATTCGAATCAAGTAAATTTCGAGCTAAGGAAATTTTGACTAATG
GAATAAGGTTTACACGGTATTGTTAACTGAAGGGACCACACAACACTTGT
TCCAGTTAAGGAGACATTCGAGTTATAGAGACTCCACTATATACTTCAAT
ATACTTCAACTATCGTGCAATAATTCCGTGAATTTTATTCCTGCAAACAT
TACAAAACTGGAAGTGGTAAAACCTCAAGAAGAAGAAAGCCAAAACAAAA
ACACACCCTATTTCCTTTTAGAGTTATTCTTGTTTAAAAAAAGCCGCAAG
CAATACAAAATGTTTTTAGGTTCCTTTTTATTAGGACGAAGTTTTTGTTT
TGTCGTTCTTTACAGTTTTAATGAAACAACAATAGACTTAACCAAAAAGA
AAGGGTGTCGGCCTTATTCAATTGTCTAACACACCCTAAAACCCTATGCT
ANGAAGGGTGTCGGGCTTATTCAATTGTCTAACACACCCTAAAACCCTCT
GCTACACATACAACATGAATTATTCAAAATGCACATTCATCGGAAGAAAC
ACCCCCATGTGTGGAAGTATGGAAATATGATTTCTAGATAAGGAATATAT
TCCGTACCAATAGTTTAAATAATTAGCCTCCGTCTCAGAACGCGGTCAGA
AAATTTTGCGGATAATTTCACAGCGAAAATGCATCCAGTGAAATGTGAGT
AATGTATCGTGATTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGAGAAAACCGTGTGGATAGTATGTCTTGTAGTAACCAAT
GCAGTGTCTGTTTTCAAATTTTGAAAGCTCTATACCTACTGAATTGAAGC
TCTGACTAGCTCTGCTTTTAAAACTTTGAGCCATGTTTATTTCTTTGTTG
CTATTAAAGATAGATTTTTAAATTGTCGTAATGTAAATTTATGGTAAAGT
TTTAGTTTTTGAGTTTAGTTCATCAGTAGTACATACAGTNCAATAATTCC
GTGAATTTTATTCCTGCAAACATTACAAAACTGGAAGTGGTAAAACCTCA
AGAAGAAGAAAGCCAAAACAAAAACACACCCTATTTCCTTTTAGAGTTAT
TCTTGTTTAAAAAAAGCCGCAAGCAATACAAAATGTTTTTAGGTTCCTTT
TTATTAGGACGAAGTTTTTGTTTTGTCGTTCTTTACAGTTTTAATGAAAC
AACAATAGACTTAACCAAAAAGAAAGGGTGTCGGCCTTATTCAATTGTCT
AACACACCCTAAAACCCTATGCTACACATACAACATGAATTATTCAAAAT
GCACATCCATCGGAAGAAACACCCCCATGTGTGGAAGTATGGAAATATGA
TTTCTAGATAAGGAATATTCCGTACCAATAGTTCAAATAATTATCCAGCA
AAACTACTTTAAACTCATTATTTAGTCTAAAAAAAACAGGTAATTACAAC
CATCCACGATCCAGATCTGAAAAACACATTGAGTTTATAGAAAGCTATCC
TTTTTTTTCTTGGTAGCTTTGACTCCAGCTTAACCCAGAGAAAGTACCTT
ATATCTAACCAGTTTTAAGTCAAATAAACCGCATTTCAACAGTTATCACT
GATCCAGGAACGTCGAATTTGCTTGATTATGATGGTCGGTGTTTTCGGCG
CACGTGAAGTTTAAGATATTTATCATCAAACAGACTTAAAACATAACTTT
GACGTTGGATTGGCGTCCTTCAGCCATGAGTGATTCAATTTCTTCGACAG
TCCTGGGAACATTGGTCATCAGTTCACACCCTTCCTCTGTCACCGCTATG
TCGTCTTCGATTCTCACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038300XLOC_038300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061015-exon-scaffold_352-1575043694:112450..114371TCONS_00061015-exon-scaffold_352-1575043694:112450..114371Clytia hemisphaericaexon
TCONS_00061015-exon-scaffold_352-1575043694:110402..111125TCONS_00061015-exon-scaffold_352-1575043694:110402..111125Clytia hemisphaericaexon
TCONS_00061015-exon-scaffold_352-1510915933:112450..114371TCONS_00061015-exon-scaffold_352-1510915933:112450..114371Clytia hemisphaericaexon
TCONS_00061015-exon-scaffold_352-1510915933:110402..111125TCONS_00061015-exon-scaffold_352-1510915933:110402..111125Clytia hemisphaericaexon
TCONS_00061015-exon-scaffold_352-1491911889:112450..114371TCONS_00061015-exon-scaffold_352-1491911889:112450..114371Clytia hemisphaericaexon
TCONS_00061015-exon-scaffold_352-1491911889:110402..111125TCONS_00061015-exon-scaffold_352-1491911889:110402..111125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:110402..114371 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141555	0.110067	0.48947	5.23349e-09	0.827172	0.373579	1.21578	1.64127	0.516857	0.402957	0.257866	0.303383	0.888502	0.482993	0	0	0.106017	0	0	0.214152	0	0.19144	1.05527	0	2.4437	3.07138	0.547751	1.96432	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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