TCONS_00060994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060994
Unique NameTCONS_00060994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1045

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060994 ID=TCONS_00060994|Name=TCONS_00060994|organism=Clytia hemisphaerica|type=transcript|length=1045bp
cagaaaaataaaaaaacaaaatattaaagCACTACTAGAAAGTTATTACA
AAGAAGATGGCGCGTATTGAATGGGCAATGTGGGCCAACGAAAATGCTGT
CATTGCATGTGCAACACTGTTTGTTGGTGGGTTACTTGCAGTGTGCAGTC
TTGCTGATGTTGAGCATGTTCGATGGGAGGTTGGTGCTTACGGAATGGCG
ATTGCTTTGATAATCTTTTTCTTGGAATACCCGAGAGGTAAAAGAACCAG
AGGGAATACTAGACAAAGAAGCATGCAACACATCCCAACGAACTTTGTCG
CCAGCATGGGTTTCTTTGGAAGAAATTATTTTGttcgttttattttatat
tttctGTGTGCAGTGCCAACCGTATTTAACTTGGGAACAGTGACCGGTGG
AATTTCTCTCCTCATTACCTCCATCATCTATCTTCGTGCCGCCATCTCCG
GCGAAAGTTGGCAACCCTGTGAAAAACAAGTCACACGGGAGAAAACATTG
ACTCGCGCACGCCCACCATCAATGGCTCCACCACGTATGGCGGCAAACGC
CAAGAAAAATGCTGCTTACGCCCCCGGCGACGACGAAAATGAGAATTACC
AAAATTCGGGTAGCGTTGTTAAATCATaagttattattttatttaattaa
ctctttttttttgaattttaacggTTAACTTTTCCCTGCCTTGAATTTCT
ATCAGCCACTACTAGTATTAGCTTGCTTGCACTTTTCCGCATAGACATGA
TTTTTACGTTGGTCATAAAATTTGGAGTACTCTATACATTTTATACATAA
TGGATACTGCGATTGGTTGGAATATTTTGCCTGTAGATTCCTTTCATGGT
CTTGAGAAAAaccttcaaatatttttgtccaaCTCCTTTACAAAGTCGAG
ATAttcaagttacaagtttttgactttgagcaaaaaaacaatctatatta
taatacgctaaaatcggaactctccaattctcgcatgaagctttttcgct
agcgatttttaagcaGACGGCAATTCTTTTTCGCGCCTTTTCTGT
Run BLAST on NCBI

protein sequence of TCONS_00060994-protein

>TCONS_00060994-protein ID=TCONS_00060994-protein|Name=TCONS_00060994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MARIEWAMWANENAVIACATLFVGGLLAVCSLADVEHVRWEVGAYGMAIA
LIIFFLEYPRGKRTRGNTRQRSMQHIPTNFVASMGFFGRNYFVRFILYFL
CAVPTVFNLGTVTGGISLLITSIIYLRAAISGESWQPCEKQVTREKTLTR
ARPPSMAPPRMAANAKKNAAYAPGDDENENYQNSGSVVKS
Run BLAST on NCBI

transcript from alignment at scaffold_352:84134..95388+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060994 ID=TCONS_00060994|Name=TCONS_00060994|organism=Clytia hemisphaerica|type=transcript|length=11255bp|location=Sequence derived from alignment at scaffold_352:84134..95388+ (Clytia hemisphaerica)
cagaaaaataaaaaaacaaaatattaaagCACTACTAGAAAGTTATTACA
AAGAAGATGGCGCGTATTGAATGGGCAATGTGGGCCAACGAAAATGCTGT
CATTGCATGTGCAAGtaagtctttttttattttattttttgcctCCATAA
CTAcgaatggaaatcttttaacaTTAAAGGAAAGAGTGGTCTCGCTGCAT
TCCCTTCTCTTGGTGACTAAATAAATTGGGAATTTGTAAACATTAGTTCT
CTTTATACTGAGACGAgtaatttagaaaatgagcattatggaggagtgta
ctttTCATTCATGTCTaataaataggatctcctccacagatcacatttta
taaactactcgtctcagacgatttttccgtctcagtataaatggaactaa
TTTTTCCAATAGTTGTGAATACCTAGGTAAAAGACTGATtatagttcgtc
caccctcactttaaggtaccgtaagttggtctaatgttgacatccctctt
ctaattccaaAACCCAGTTTTAGAGATAAGAATAATAGTAAGGTCAgacg
aaagattttttcctctctggTCACAAAGCAAAGAAATATAGTTTCCATAA
GCGACTCCGACCTTTCTACtattcctatctttaaagaagggtggcgagat
tagatgagggatgtcgacatcaTTAGACCAAGTTAAGGTACTGTATGAAC
AGAATTTTTCCAatggttcttttgcaaattttgccattttccacatttag
aaaaatgctttttttgcCTTGAAAGGGTTCGTCCACCCCTTGTATGGGAA
TTTAACAGAGCAGCTCATTTTACTTACGCGTTGTGCGGAATAATTTTTTG
TGAAGTACTTTGAAGTCTGGCCCCTGGTGTAAAACTTAAGATGCTaacaa
aattgattattttgaaatatattagATTAATGTCTTGGATGTAATGAAGG
GTGAATAAAAATCCTGGCAAGGTGCTCGATACAAAACGagtgttttcttc
attttaaaacttattccaatgaaacaaaatgctgaaaacgggattttata
ttttgtttttgaataaattttgaaatgattaGTTGTCTTAGATGTAGAAA
GTGTTAATGAATTCGGAATACAAATCTTGTTTGACTGTTAGTGGTAAACA
TGGTGTGTTTGGATGAATTGTTGAAATCGATAACTGTTGAGGCAGGTGAA
ATAAATAGATCTAAACAATAATAGATTTGCAAAGGGAAATTtattagttt
caattttcactgattttaaAATCAATCGGATTGATAGAAAAGTTAGGGCA
CTGCTTTTCAATTCTCATTGAAAATGCATGCGACCGAACGAAATTTCAGC
TCTATAAAACAGTGAAAAAGGAGATTTGATGGTTTTAGTGAAGTTGGTGA
GTGTAACCATTATGACCATAAAGTTCTGTATTTTCATCGTATTATCTATT
TCGATCTTTTCATGTGACTCAAAGTTGTACGAACAGTTTTCAGATGCTTC
AAGCTCAAAAGGAAATGCTGACATTTTCGTAATCGGTTTATTTTCACTTT
GTCAAAACGAGACTAATTCCTTTCCCTATTATGaccagaaaaagattttg
aattctTATTTACACTTCGAGAGAACTGTCACATTTTATCAAACCATATA
CGATGTATCTTTTGGGAAAATTGGTAGCATCTCCTATGATGTTTGCCGCA
ATCAAAGTCGCCTTTTGGAGGTTATTGCAGGACTTTCACTAAGTGGTAAA
TATTTGCTTGAACCAAGAAATGCTATTCGATTTGCTCATGCTAATTATAT
TGCTATCTATGGTTTCTTAACTACACCTCTATTGAAGCTTTCATTGGAGT
TATTGTCATGGATAGAGGTACCTTACTTTGTTATCTTACCTGACGATGAA
CAAGCGTTTTATCTACCTATCACACGATATCAACATTTAGGAAAAACAGC
CATGATTGAGAATAAGGTTATTGAAAGGTTATTTACTTCGTATTACTGGC
AAAGTTTTACATTCATTTTGTTAAGTTCGAATGAATTATATGTCAAGAGA
GTTGATTATTTGATCGAAAAGCTGATCGCCGAGAAAAGATCTACGTGCAT
TGTTAAAATGTTAGCATTCAATCCATCAAAAGTAGACGAGACTGTGCAGT
TGTTGGTGAACCAGACTTCACGAAAAGTCATCTACGCGATGGGAAACAGC
GTACAAACGGAAATTTTTCTGCAAACTCTCGATCGCTTTAAAGTTTACAA
CCGCATCATCTTTCTAGATTCGCGAGCGGTTGGTGTCAAAGTCCCGGACA
GGCTTCAGAAGGGTTTATATTTTGTTCCATCTCTTGGgaattagtgaggt
taagtataccaggataatcacgacgacggacgaaaaatgtaataggctag
tggaaatacaaaatttgattggttgaaactcactagcctgttaaattttc
gttcgtcgtcgtgattttaccaatttacttaacctcactattatgCATTC
GAATTATACGAAAATGAATCGAAGAGAACGTCTGTTCCGGATAGCTTTCC
TTTCCCGGTTTGTAAAAATGGTTTCTTCCGTAATACGGAATTAATGGATT
CTAAAGGTGATATCTGTTTGGAGAATTCCAATCTGACACTAGTTCAATGG
AATAGACAACAAAACGACACAAGTAGTGTGTCGGAAACTCTATCGCATGC
CGTTTTATTTCCCTATTGGCAGTTTTACGAAGCTTCAAGATGGCTACCTA
AAATTGAACATTATAACATAACGGATCAGCCTGACCAATTAAGATATATC
TCTCGCGGCATCAATCGTAAATTTCGTGAATGGCTACACGGCTCACATTA
CATTATTAACATGCAGAAACCAGGTGCTGTTCACACATGCCTCACACACT
GGTTTCCATCAACTTGTATCTTTCGTGGGCGTAAATTTCCAGTCACGTGG
CCTGGACCCTCGAATGAAATCCCGCGGCAGTATTTGTGTTTCGAGGAAAG
AATACTACCAGCAGGGCAAACATTGCAATATGGGGATATTCCTCACAATG
AAACACAATGGGATTTAGAATATGGCTACAGACTTGTTAAATGCGCCTTT
GGATGGTATAAAGAAAACGCTGAAGACTTTTCTTGTCAGCCTTGTCCTGA
AGGGCTGGTATCAAGTCCCGATCGAACTGCTTGTATTGATCAATATACTC
GAATCAGTGTTTTTGGTTTCAATACGAAAGAAAGTCTTATTTTTTCGATG
CTCATTTTCATGGGATATGTGATCAGCTTATCGTACTGTGTATGTTTGAT
CGTTCATCGTAAAACAGCTGTGGTGAAATCTTCGCAGTTCAAATTCACTC
TATTACAATTATTGAGTcattttttcgatttcttttgtCTCATGTATGCT
TTCGCTTATCACAATGACAACACTGCTTGTATGCTTTTAACTGTCGGTGT
TGGCTTCTTACTGTCCTTGAATCTAGCTCTGGCAATTATCAAGACCCAAA
TANTGCTTGTATGCTTTTAACTGTCGGTGTTGGCTTCTTACTGTCCTTGA
ATCTAGCGCTGGCAATTATCAAAACCCAAATCATCATTGATATATTTTAT
GCTAAAACGAAAATTGATCACGAGCAACAGTTGAAACGGAACTATAGAAA
CGCTTTTATAATCGGGATAATCGTTTCCGTTTCGGTTTCTTTATCGGTTA
TCACCATTGTTTTCCATAATCCCGATGCAATCGGGGAAATAATTAACCAA
GACCTCAAATTCGGTTTTTGTGATTTCGGTCATCATCTACAAGTCCAGTT
TGGTTATTCGATTATCCTATCCATCATTTGTACTGTTCAAAGTATACGGG
CGCGTCATTTACCGGATTTCTTTAAGAGTACCCGGTTTATTGTATACGGT
ATGTTTACAAACCTGATGACCATGGTAGTGTTTTACACCGTATATAACAA
CCAACGGGGAAACCGGATTGTACAGTTTTATGCGATGGGTTTTGCTGCAG
TTTCTTCAAACTATGTTTTATTATTGATCGTTCATACCAATCGGATCCTC
AGTATTTTTAATCGGAAACGAAACACACAGGCAGTCGTCAGACGTCAAAT
ACGACAGAACATggacaaattgaatgaaaacgTTAAAATCAGAACTCTAC
CTCAGCAATGATTTGGACATTCAAATTAGTTATTAAAAATATGATATTGA
AAGATATTTAGCGAAAAATAATACTAGCTTTTatcattttgattaatttt
ttttgttatcaTTTACAATTACAGTAggctcccggttattcgaaccTGCA
CTTATTCGAAGTGAGATGGCGTTCCCCTTGGATCTGCTTACTCAACCCAG
GCAAAAACACTCTCGGTTATTCGAACTTCAGTTATTTGaactttcagtta
ttcgaagcgGTTTCTATTCCCATGCATTATAGGCTAAATCACACTcagtt
attcgaatttttcttattAGGAGATTGTCGAGTGAGAACATTAATTTCTG
CGATTGAAATAAttgttttcctttaaaaattagttttcaataTTTATGGC
TATAAATCGCTATTCAAGCaatttatttgtgtttattacgcTCATGAACC
GCAATGCTTCAATTTCTTCAGGAAAGTCCACCCAATTAAGGTTAAGTTGA
GAATCTGGCGGGATAACGAATTTTGCAGTTATTTGAATAACCGGAAGTTT
ACCGTAATTCAATAAGCAAAAACTGTTAATTACAACAACCTTACCTTCCA
TTTAACACAATAATTTATCCTATTTCAATCCCTAAAGGAAGTTTTGTTCC
ACCAACTAGTCATATCTCCcagttgaattttgaattttctaacGTGCATG
ACAGTCTCACACAAGCTCTTGTTAACAGAAAATTTGAGCGCGATTCTTTC
CAAATTTACCAATGCCGGTTCGACACTGACTCAGCTAGactcaaaaaaag
gttttctctATTCCATTCCAAATATCAGCAAAATTCAAAGATTATTTAAT
TCGTTATGTAATTCGGTTTTTNTTCCATCCCAAATATCAGCAAAATTCAA
AGATTATTTAATTCGTTATgtaattcgattttcatttgGAATTCTTGAGC
ACTACACACTCTTTTGCTTTTAtgctcaatttcaagcaatttagagatca
aagtagtaaaaactgGGTATAAATACCTCAacaagaacaggataagaaca
atttgaggctcaaagtgccaaaaataaTAACAGTATGTATTCCGTAATAT
AAACTTTCTTGATTCGTTTCTTTTTTAGCACTGTTTGTTGGTGGGTTACT
TGCAGTGTGCAGTCTTGCTGATGTTGAGCATGTTCGATGGGAGGTTGGTG
CTTACGGAATGTGAGTGTAGtttattttaaaacttgaaTCTGTCAATATT
AGATTAGCCAGCACCTTTTCTACCAAtaaattttctatattttcattGTG
TCGGTCAACTCTCACTCTCTaaatcgaatctttctgtaactcGGACTAGA
ATATTGGTagcttgaagatcgaattagagagagtcaactttaTACATCGA
TAGCCTAgtctatactagacgtcactgcattattatttctacaaaattaa
aaatcctGTTATTTGGCGgggttacttgttatctatagCCTGGCATCGTA
TAGATTCGACTTTTTCCGTGTGCTGTTGTCCCTCCTGTAGCCTATTACAA
ATCTCTCACAAGAAATGATAACCAGATTGAAAATCGCTATATTATAACCA
ATACCCAATTTAAGCAAGAACCTGACCTTGTTCCCTCAAGACCTCTTGCT
CCTCCCTTGTTTCTTTCAAGtatatgttttatttttcatttccttTAGGG
CGATTGCTTTGATAATCTTTTTCTTGGAATACCCGAGAGGTAAAAGAACC
AGAGGGAATACTAGACAAAGAAGGTacgaaaacattttattttgtttcac
cTGTTAACAATTCAGGAATGTAGTATTTTTCTCAATGATATCGAGGGGGG
GAGAAAAGGTCGGGGAGAGTGACAAAAATCTTGGAGGAATACAGAATTTC
gcctagactagagtctacttctgactgaactttgtttttgataatttttt
atgatgcTGAGTCTATAAGGGGCCCCCGGGCTAAATTTTCCCCTGATGAG
GTTTTCTCATGTTCAATTATCTACAAAACAGAACTTTTGGTAAAGTCACT
TTTTAAAGCTAAATTTCTTTTGCCCTTTTCTGATAAGATAATAGGtaata
ttatttttgaaagtccCTTCCCTTCATCTTCATGGAATGAAATCATTCCG
AAAAATAGAATCTAAACTtatacaccctcttctcacagacccactgggat
cccttcccactggaaaatttgaccaaaatatcgtccccggtggaaaacta
tcctccaatttttgtacccactgaaaataattaaataaagcAATCCTCAC
taattttttgttctatttttcccatccccactgaattttcttccttgaaa
acaatagaattgaaaccccagccataaaaaatgggtgaatatcaatcccc
atcgagttttagtccgtgATTTTTACTGTGAAAAGGGGGCGGTGTAGTTA
TGAATAATAAGATTCAGATTtgcaaaatattaaaatctTACTTATCCCAT
AATATCTTTTGTGTTTTATTATAGCATGCAACACATCCCAACGAACTTTG
TCGCCAGCATGGGTTTCTTTGGAAGAAATTATTTTGttcgttttatttta
tattttctgtaagtaactttttttgtatttttttgccACAGATGGTCAAG
TGATGAACTCTTAAGTAAACTCTTAAACAAATGAGACTTAATTCTTTTTG
AGGTGGAAACGGCGGGATCTAAACACTTTTGATTAACCCTAGTGTTTAAA
ATCCATTTAGTAAGTCCGTATATAATCCCGGTCTGGaagctttttgtttc
tttccattgtttcttacttgaacttgcgttgagaaattagtttttggacc
tacctaaggtagtcctttaaattaacccttgtccgttcgttcgtccgttc
gttcgttcgttcgtctgttgccagcttttctcgggatcggctctNNNNNN
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NNNNNNNNNNNNNNNNtgcaatatgacaatacctaaaatgtgacggagcc
cgattttcgaaaaacatttttttccatccgaaaatgccggaaatatgccg
gaaaaaccggttttttgacgttttctcgagattttatcacaagttttttc
agattttttgcagaaagatgcgtattcgcaatgctcaaaacatggccgag
ttcgatttttgagaaaaaaatttttccggttgaaaatgccggaaatcgcc
gtttctGCACCGTTtctgcagattttcattggattttttccttttatttc
tatgtttttcactcaaaaacattattgataacaatgctcaccgtcaagca
tgattcaattgtcaataaaacagatttttgcgaccagaactttctattaa
tttttccctacaaccctcccctctccccccatcatcaatcaatgatgaat
ttattgcgttgtgtattttcgctaaacgctatattttctgactgattttt
ttcatttttcttttcgcattgctatctaaatttcatcatcaggtaggtcc
attcagcatgttgcttgttgatcatgtgattagatttTAATCTATTAcaa
gaggagtacttggtaacgtgatcgaaaactgagcaaatcgatttttatat
ttttatgttaacAAAGGAAAAGCTCACAAAATGTTAGTACGGActatatg
taatagttatcggaacgagtgaaatatttccatattgtatgagcaaatgt
ctgataactagtttatcggtgacccaaaaaatgcactttctgtgttggag
gacacttttgtagcaaagtgacgttatattgcttctaccgctacaatgca
acaacatcttttcgtcaatttatatttttacatgtaaaatacaagatata
ttgtactctttttaaccaatcagattgcagatattttttggatcgccgat
aaaaacCTATAAAAGAAACGTTTGTTGATATGATATTCTACTCAGCTTGC
TTCGTTGAATTTCAatcaagctcgactgaataTCTTCCAATGAACGATTT
TTCTTGACGAATATTTGctcaggcgaaaataaaaaaatgtagtgtttccg
gaaaccggccgggtgaaaaacaataattttctgacccggccgcagacttc
attagtagttgatacattagtattcagggcttacttcatactgtttgtac
ataaaagttatctttaaagttctatttcaatgatcttaagttatcaaaaa
tagcaaaaaaagtttttttccggccgcatgagagcttttttccttgaccc
gcattccggaaacactacatttttttattttcgcctcattgttttatatt
ttctctTTAGGTGTGCAGTGCCAACTGTATTCNTTTCGCCTcattgtttt
atattttctctTTAGGTGTGCAGTGCCAACCGTATTTAACTTGGGAACAG
TGACCGGTGGAATTTCTCTCCTCATTACCTCCATCATCTATCTTCGTGCC
GCCATCTCCGGCGAAAGTTGGCAACCCTGTGAAAAACAAGTCACACGGGA
GAAAACATTGACTCGCGCACGCCCACCATCAATGGCTCCACCACGTATGG
CGGCAAACGCCAAGAAAAATGCTGCTTACGCCCCCGGCGACGACGAAAAT
GAGAATTACCAAAATTCGGGTAGCGTTGTTAAATCATaagttattatttt
atttaattaactctttttttttgaattttaacggTTAACTTTTCCCTGCC
TTGAATTTCTATCAGCCACTACTAGTATTAGCTTGCTTGCACTTTTCCGC
ATAGACATGATTTTTACGTTGGTCATAAAATTTGGAGTACTCTATACATT
TTATACATAATGGATACTGCGATTGGTTGGAATATTTTGCCTGTAGATTC
CTTTCATGGTCTTGAGAAAAaccttcaaatatttttgtccaaCTCCTTTA
CAAAGTCGAGATAttcaagttacaagtttttgactttgagcaaaaaaaca
atctatattataatacgctaaaatcggaactctccaattctcgcatgaag
ctttttcgctagcgatttttaagcaGACGGCAATTCTTTTTCGCGCCTTT
TCTGT

Coding sequence (CDS) from alignment at scaffold_352:84134..95388+

>TCONS_00060994 ID=TCONS_00060994|Name=TCONS_00060994|organism=Clytia hemisphaerica|type=CDS|length=2865bp|location=Sequence derived from alignment at scaffold_352:84134..95388+ (Clytia hemisphaerica)
ATGGCGCGTATTGAATGGGCAATGTGGGCCAACGAAAATGCTGTCATTGC
ATGTGCAACACTGTTTGTTGGTGGGTTACTTGCAGTGTGCAGTCTTGCTG
ATGTTGAGCATGTTCGATGGGAGGTTGGTGCTTACGGAATGGCGATTGCT
TTGATAATCTTTTTCTTGGAATACCCGAGAGGTAAAAGAACCAGAGGGAA
TACTAGACAAAGAAGCATGCAACACATCCCAACGAACTTTGTCGCCAGCA
TGGGTTTCTTTGGAAGAAATTATTTTGttcgttttattttatattttctG
TGTGCAGTGCCAACCGTATTTAACTTGGGAACAGTGACCGGTGGAATTTC
TCTCCTCATTACCTCCATCATCTATCTTCGTGCCGCCATCTCCGGCGAAA
GTTGGCAACCCTGTGAAAAACAAGTCACACGGGAGAAAACATTGACTCGC
GCACGCCCACCATCAATGGCTCCACCACGTATGGCGGCAAACGCCAAGAA
AAATGCTGCTTACGCCCCCGGCGACGACGAAAATGAGAATTACCAAAATT
CGGGTAGCGTTGTTAAATCATaaATGGCGCGTATTGAATGGGCAATGTGG
GCCAACGAAAATGCTGTCATTGCATGTGCAACACTGTTTGTTGGTGGGTT
ACTTGCAGTGTGCAGTCTTGCTGATGTTGAGCATGTTCGATGGGAGGTTG
GTGCTTACGGAATGGCGATTGCTTTGATAATCTTTTTCTTGGAATACCCG
AGAGGTAAAAGAACCAGAGGGAATACTAGACAAAGAAGCATGCAACACAT
CCCAACGAACTTTGTCGCCAGCATGGGTTTCTTTGGAAGAAATTATTTTG
ttcgttttattttatattttctGTGTGCAGTGCCAACCGTATTTAACTTG
GGAACAGTGACCGGTGGAATTTCTCTCCTCATTACCTCCATCATCTATCT
TCGTGCCGCCATCTCCGGCGAAAGTTGGCAACCCTGTGAAAAACAAGTCA
CACGGGAGAAAACATTGACTCGCGCACGCCCACCATCAATGGCTCCACCA
CGTATGGCGGCAAACGCCAAGAAAAATGCTGCTTACGCCCCCGGCGACGA
CGAAAATGAGAATTACCAAAATTCGGGTAGCGTTGTTAAATCATaaATGG
CGCGTATTGAATGGGCAATGTGGGCCAACGAAAATGCTGTCATTGCATGT
GCAACACTGTTTGTTGGTGGGTTACTTGCAGTGTGCAGTCTTGCTGATGT
TGAGCATGTTCGATGGGAGGTTGGTGCTTACGGAATGGCGATTGCTTTGA
TAATCTTTTTCTTGGAATACCCGAGAGGTAAAAGAACCAGAGGGAATACT
AGACAAAGAAGCATGCAACACATCCCAACGAACTTTGTCGCCAGCATGGG
TTTCTTTGGAAGAAATTATTTTGttcgttttattttatattttctGTGTG
CAGTGCCAACCGTATTTAACTTGGGAACAGTGACCGGTGGAATTTCTCTC
CTCATTACCTCCATCATCTATCTTCGTGCCGCCATCTCCGGCGAAAGTTG
GCAACCCTGTGAAAAACAAGTCACACGGGAGAAAACATTGACTCGCGCAC
GCCCACCATCAATGGCTCCACCACGTATGGCGGCAAACGCCAAGAAAAAT
GCTGCTTACGCCCCCGGCGACGACGAAAATGAGAATTACCAAAATTCGGG
TAGCGTTGTTAAATCATaaATGGCGCGTATTGAATGGGCAATGTGGGCCA
ACGAAAATGCTGTCATTGCATGTGCAACACTGTTTGTTGGTGGGTTACTT
GCAGTGTGCAGTCTTGCTGATGTTGAGCATGTTCGATGGGAGGTTGGTGC
TTACGGAATGGCGATTGCTTTGATAATCTTTTTCTTGGAATACCCGAGAG
GTAAAAGAACCAGAGGGAATACTAGACAAAGAAGCATGCAACACATCCCA
ACGAACTTTGTCGCCAGCATGGGTTTCTTTGGAAGAAATTATTTTGttcg
ttttattttatattttctGTGTGCAGTGCCAACCGTATTTAACTTGGGAA
CAGTGACCGGTGGAATTTCTCTCCTCATTACCTCCATCATCTATCTTCGT
GCCGCCATCTCCGGCGAAAGTTGGCAACCCTGTGAAAAACAAGTCACACG
GGAGAAAACATTGACTCGCGCACGCCCACCATCAATGGCTCCACCACGTA
TGGCGGCAAACGCCAAGAAAAATGCTGCTTACGCCCCCGGCGACGACGAA
AATGAGAATTACCAAAATTCGGGTAGCGTTGTTAAATCATaaATGGCGCG
TATTGAATGGGCAATGTGGGCCAACGAAAATGCTGTCATTGCATGTGCAA
CACTGTTTGTTGGTGGGTTACTTGCAGTGTGCAGTCTTGCTGATGTTGAG
CATGTTCGATGGGAGGTTGGTGCTTACGGAATGGCGATTGCTTTGATAAT
CTTTTTCTTGGAATACCCGAGAGGTAAAAGAACCAGAGGGAATACTAGAC
AAAGAAGCATGCAACACATCCCAACGAACTTTGTCGCCAGCATGGGTTTC
TTTGGAAGAAATTATTTTGttcgttttattttatattttctGTGTGCAGT
GCCAACCGTATTTAACTTGGGAACAGTGACCGGTGGAATTTCTCTCCTCA
TTACCTCCATCATCTATCTTCGTGCCGCCATCTCCGGCGAAAGTTGGCAA
CCCTGTGAAAAACAAGTCACACGGGAGAAAACATTGACTCGCGCACGCCC
ACCATCAATGGCTCCACCACGTATGGCGGCAAACGCCAAGAAAAATGCTG
CTTACGCCCCCGGCGACGACGAAAATGAGAATTACCAAAATTCGGGTAGC
GTTGTTAAATCATaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038293XLOC_038293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060994-exon-scaffold_352-1491911889:84134..84247TCONS_00060994-exon-scaffold_352-1491911889:84134..84247Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1510915933:84134..84247TCONS_00060994-exon-scaffold_352-1510915933:84134..84247Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1575043694:84134..84247TCONS_00060994-exon-scaffold_352-1575043694:84134..84247Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1491911889:89412..89493TCONS_00060994-exon-scaffold_352-1491911889:89412..89493Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1510915933:89412..89493TCONS_00060994-exon-scaffold_352-1510915933:89412..89493Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1575043694:89412..89493TCONS_00060994-exon-scaffold_352-1575043694:89412..89493Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1491911889:89982..90056TCONS_00060994-exon-scaffold_352-1491911889:89982..90056Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1510915933:89982..90056TCONS_00060994-exon-scaffold_352-1510915933:89982..90056Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1575043694:89982..90056TCONS_00060994-exon-scaffold_352-1575043694:89982..90056Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1491911889:90808..90891TCONS_00060994-exon-scaffold_352-1491911889:90808..90891Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1510915933:90808..90891TCONS_00060994-exon-scaffold_352-1510915933:90808..90891Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1575043694:90808..90891TCONS_00060994-exon-scaffold_352-1575043694:90808..90891Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1491911889:94699..95388TCONS_00060994-exon-scaffold_352-1491911889:94699..95388Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1510915933:94699..95388TCONS_00060994-exon-scaffold_352-1510915933:94699..95388Clytia hemisphaericaexon
TCONS_00060994-exon-scaffold_352-1575043694:94699..95388TCONS_00060994-exon-scaffold_352-1575043694:94699..95388Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060994-proteinTCONS_00060994-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:84134..95388 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.34524	11.0269	16.3885	25.5815	32.7563	25.3212	11.5575	12.9146	14.933	19.8332	22.2306	12.8097	45.3198	40.4703	15.3043	13.7827	47.7695	53.4429	57.589	60.048	68.7315	70.3968	36.6306	43.5007	44.9929	44.1327	58.4586	48.6623	60.9156	45.5751
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007732Cyt_b558_asu
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0020037 heme binding
Blast
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BLAST of TCONS_00060994 vs. Swiss-Prot (Human)
Match: CY24A (Cytochrome b-245 light chain OS=Homo sapiens GN=CYBA PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.705e-30
Identity = 63/146 (43.15%), Postives = 83/146 (56.85%), Query Frame = 3 
Query:   57 MARIEWAMWANENAVIACATLFVGGLLAVCSLADVEHVRWEVGAYGMAIALIIFFLEYPRGKRTRGNTRQRSMQHIPTNFVASMGFFGRNYFVRFILYFLCAVPTVFNLGTVTGGISLLITSIIYLRAAISGESWQPCEKQVTREK 494
            M +IEWAMWANE A+ +   L  GG++A          +W  GAY +   + +  LEYPRGKR +G+T +R  Q   T  V   G F RNY+VR +L+ L +VP  F L T+ G   L I S IYL AA+ GE W P E +  RE+
Sbjct:    1 MGQIEWAMWANEQALASGLILITGGIVATAG----RFTQWYFGAYSIVAGVFVCLLEYPRGKRKKGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGIYLLAAVRGEQWTPIEPK-PRER 141
The following BLAST results are available for this feature:
BLAST of TCONS_00060994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CY24A3.705e-3043.15Cytochrome b-245 light chain OS=Homo sapiens GN=CY... [more]
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