TCONS_00060992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060992
Unique NameTCONS_00060992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060992 ID=TCONS_00060992|Name=TCONS_00060992|organism=Clytia hemisphaerica|type=transcript|length=1785bp
cttagttataaataaaaacaacaagaaataaTATCAAGATGTCGTACATG
TTACCGCATTTAGACAATGGATGGCAAGTAGATCAAGCCATTACAAGTGA
AGAAGACCGTGTGGTGGTCATCAGGTTTGGTCACGATTGGGATCCAACTT
GTATGAAAATGGATGAAATCTTATTCAGCATTGCTGACAAGTGTAAAAAT
TTTGCTGCAGTTTATTTAGTGGATATCACAAAAGTACCGGATTTTAATAA
AATGTATGAATTGTATGACCCATGTACAGTCATGTTCTTTTACAGGAATA
AGCACATCATGATAGATTTGGGGACTGGTAATAATAATAAGATTAACTGG
GCTTTGGAAGATAAACAAGAGATGATTGACATTATTGAAACCGTGTATCG
TGGTGCAAGGAAAGGTCGTGGGTTGGTCATTTCACCTAAAGATTATTCAA
CTAAATACAGATATTGATTTGTGATGTTTGTATATGACCTTTGAGTGACA
TAATGTCCATATGTCATATAATATAATGTTGAATACGTACGTGTATAGTT
TATTGGTCATTAGTGAACTTCAAGAATGCCACCTTTGACTGAAATTCAAG
TGGTTATTCTATAATATCTGATGATGATGTGTTTGTTGGATCAATAAGAA
TGTTTTCGGTTGGGCtggtatttttaaattttgattgaatcCTTGATGCT
TTGATCGGGCAGACTTTTTAATATGGCAATGGCGAGAAAGGTGCAattgg
tttttttttatttccttggctgatttttagaaaatatactCGCTATGTTA
TTAATATATAAAAGAAACTTTCTTTGTATTAtatttatgacttttttcaa
ttaTTCTACTTGTCTTTGCCATTAATATTTAGACGTTGtcacttcaaatt
ttttttttcaaaaagtgctgaCATTAACATGACTTTCAGCAAGAAAGGGT
TTTTGAAACAAGTGGGTTTTTCTCAGAACCAGAGTGAgttgtatttaaaa
aaaggtaaaacCTAGAATTTTTCATTAACGTACTTTTTCATATTTAAGTT
TTATTGGCTATGCTTCATATTTATAAAAGTTACATCTAAATCTGTGTATT
TTTGTTAACCCAGTCAAGTTCTTTTTAGGGATCTTAGATTTtaatttaca
tgtttttttctctcaagtaaacaatgaaatttgaaaccatttttattTGT
ATGAAATCTTTGTTGCGTAAATGTTGACAAAGCGAAACTTTATTTCAAGT
ACTTTATGTAGGAGTTTTTTGTCTGGTTTTATCACTTTGAGAGATTTATG
TGTATGATAATCATTTTTGAACTACATGTCTTTCACATTTAGCAGTGTGA
TAAGTATGTAGAAGTTCATTAAAATTGGCGAATGCTGTACTTGCAGTCTA
TTTCTAGATAGGTTCAGGTAGATTTcatgttttatgttttgttttcatgt
tttatgttttgttttggtaCCATTTTCTATGATTATGATTGTTGTAGTAA
GGCCAGGTAAGGCTGACTTGATAAAAGTTATATTACTTTTTAGAAGACTG
GTATTTAGTAGTTGGTCCTGACAGATGTTGGCAATAACCAGAAACAACCA
AAGCTTAAATTACGTGAGCTTTATTTTGAAGCCTTCTCCAAGCGTTTTTT
CATGTCCATCTATACACCCAGGTATTAGTTAGACATTTCTTGCACAAAAT
TTTTGAACTTCTTTGTTGAGTTTTTTTAGGACGTTTAAAAACTTAACAAG
AGTTTAAGTTTAAACAcgaatactctcgggtacct
Run BLAST on NCBI

protein sequence of TCONS_00060992-protein

>TCONS_00060992-protein ID=TCONS_00060992-protein|Name=TCONS_00060992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MSYMLPHLDNGWQVDQAITSEEDRVVVIRFGHDWDPTCMKMDEILFSIAD
KCKNFAAVYLVDITKVPDFNKMYELYDPCTVMFFYRNKHIMIDLGTGNNN
KINWALEDKQEMIDIIETVYRGARKGRGLVISPKDYSTKYRY
Run BLAST on NCBI

transcript from alignment at scaffold_352:78310..80272+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060992 ID=TCONS_00060992|Name=TCONS_00060992|organism=Clytia hemisphaerica|type=transcript|length=1963bp|location=Sequence derived from alignment at scaffold_352:78310..80272+ (Clytia hemisphaerica)
cttagttataaataaaaacaacaagaaataaTATCAAGATGTCGTACATG
TTACCGCATTTAGACAATGGATGGCAAGTAGATCAAGCCATTACAAGTGA
AGAAGACCGTGTGGTGGTCATCAGGTTTGGTCACGATTGGGATCCAACTT
GTATGAAAATGGATGAAATCTTATTCAGCATTGCTGACAAGTGTAAAAAT
TTTGCTGCAGTTTATTTAGTGGATATCACAAAAGTACCGGATTTTAATAA
AATGTATGAATTGTATGACCCATGTACAGTCATGTTCTTTTACAGGAATA
AGCACATCATGATAGATTTGGGGACTGGTAATAATAATAAGATTAACTGG
GCTTTGGAAGATAAACAAGAGATGATTGACATTATTGAAACCGTGTATCG
TGGTGCAAGGAAAGGTCGTGGGTTGGTCATTTCACCTAAAGATTATTCAA
CTAAATACAGATATTGATTTGTGATGTTTGTATATGACCTTTGAGTGACA
TAATGTCCATATGTCATATAATATAATGTTGAATACGTACGTGTATAGGG
TGCACCTATCAACCATTAAAACTTGAGGAGACTGGATAAGAATTTACCAA
GAAGGATTGGCGTCAATTTTCTAAGATAGTTGATATTCTCATAGAAAAAG
AACTTTGACGTCAATGTTTCCTGGCAAGTTCTAATCCAGTCAAATCCTCA
CACTTTAAGGTTTGATAGGTGTATAGTTTATTGGTCATTAGTGAACTTCA
AGAATGCCACCTTTGACTGAAATTCAAGTGGTTATTCTATAATATCTGAT
GATGATGTGTTTGTTGGATCAATAAGAATGTTTTCGGTTGGGCtggtatt
tttaaattttgattgaatcCTTGATGCTTTGATCGGGCAGACTTTTTAAT
ATGGCAATGGCGAGAAAGGTGCAattggtttttttttatttccttggctg
atttttagaaaatatactCGCTATGTTATTAATATATAAAAGAAACTTTC
TTTGTATTAtatttatgacttttttcaattaTTCTACTTGTCTTTGCCAT
TAATATTTAGACGTTGtcacttcaaattttttttttcaaaaagtgctgaC
ATTAACATGACTTTCAGCAAGAAAGGGTTTTTGAAACAAGTGGGTTTTTC
TCAGAACCAGAGTGAgttgtatttaaaaaaaggtaaaacCTAGAATTTTT
CATTAACGTACTTTTTCATATTTAAGTTTTATTGGCTATGCTTCATATTT
ATAAAAGTTACATCTAAATCTGTGTATTTTTGTTAACCCAGTCAAGTTCT
TTTTAGGGATCTTAGATTTtaatttacatgtttttttctctcaagtaaac
aatgaaatttgaaaccatttttattTGTATGAAATCTTTGTTGCGTAAAT
GTTGACAAAGCGAAACTTTATTTCAAGTACTTTATGTAGGAGTTTTTTGT
CTGGTTTTATCACTTTGAGAGATTTATGTGTATGATAATCATTTTTGAAC
TACATGTCTTTCACATTTAGCAGTGTGATAAGTATGTAGAAGTTCATTAA
AATTGGCGAATGCTGTACTTGCAGTCTATTTCTAGATAGGTTCAGGTAGA
TTTcatgttttatgttttgttttcatgttttatgttttgttttggtaCCA
TTTTCTATGATTATGATTGTTGTAGTAAGGCCAGGTAAGGCTGACTTGAT
AAAAGTTATATTACTTTTTAGAAGACTGGTATTTAGTAGTTGGTCCTGAC
AGATGTTGGCAATAACCAGAAACAACCAAAGCTTAAATTACGTGAGCTTT
ATTTTGAAGCCTTCTCCAAGCGTTTTTTCATGTCCATCTATACACCCAGG
TATTAGTTAGACATTTCTTGCACAAAATTTTTGAACTTCTTTGTTGAGTT
TTTTTAGGACGTTTAAAAACTTAACAAGAGTTTAAGTTTAAACAcgaata
ctctcgggtacct

Coding sequence (CDS) from alignment at scaffold_352:78310..80272+

>TCONS_00060992 ID=TCONS_00060992|Name=TCONS_00060992|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_352:78310..80272+ (Clytia hemisphaerica)
ATGTCGTACATGTTACCGCATTTAGACAATGGATGGCAAGTAGATCAAGC
CATTACAAGTGAAGAAGACCGTGTGGTGGTCATCAGGTTTGGTCACGATT
GGGATCCAACTTGTATGAAAATGGATGAAATCTTATTCAGCATTGCTGAC
AAGTGTAAAAATTTTGCTGCAGTTTATTTAGTGGATATCACAAAAGTACC
GGATTTTAATAAAATGTATGAATTGTATGACCCATGTACAGTCATGTTCT
TTTACAGGAATAAGCACATCATGATAGATTTGGGGACTGGTAATAATAAT
AAGATTAACTGGGCTTTGGAAGATAAACAAGAGATGATTGACATTATTGA
AACCGTGTATCGTGGTGCAAGGAAAGGTCGTGGGTTGGTCATTTCACCTA
AAGATTATTCAACTAAATACAGATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038292XLOC_038292Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060992-proteinTCONS_00060992-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060992-exon-scaffold_352-1491911889:78310..78849TCONS_00060992-exon-scaffold_352-1491911889:78310..78849Clytia hemisphaericaexon
TCONS_00060992-exon-scaffold_352-1510915933:78310..78849TCONS_00060992-exon-scaffold_352-1510915933:78310..78849Clytia hemisphaericaexon
TCONS_00060992-exon-scaffold_352-1575043694:78310..78849TCONS_00060992-exon-scaffold_352-1575043694:78310..78849Clytia hemisphaericaexon
TCONS_00060992-exon-scaffold_352-1491911889:79028..80272TCONS_00060992-exon-scaffold_352-1491911889:79028..80272Clytia hemisphaericaexon
TCONS_00060992-exon-scaffold_352-1510915933:79028..80272TCONS_00060992-exon-scaffold_352-1510915933:79028..80272Clytia hemisphaericaexon
TCONS_00060992-exon-scaffold_352-1575043694:79028..80272TCONS_00060992-exon-scaffold_352-1575043694:79028..80272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:78310..80272 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.3667	21.8862	16.7714	15.311	38.0078	25.4044	27.5526	29.1	19.3113	15.9076	13.7526	10.7195	8.42897	7.85178	8.27037	8.12089	13.2827	13.1467	6.84397	8.28857	15.5839	15.8289	24.7527	21.9172	11.2629	16.2426	19.3847	14.1982	17.44	18.9906
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004123Dim1
IPR012336Thioredoxin-like_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
Blast
[Close]
BLAST of TCONS_00060992 vs. Swiss-Prot (Human)
Match: TXN4A (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.667e-91
Identity = 129/142 (90.85%), Postives = 138/142 (97.18%), Query Frame = 3 
Query:   39 MSYMLPHLDNGWQVDQAITSEEDRVVVIRFGHDWDPTCMKMDEILFSIADKCKNFAAVYLVDITKVPDFNKMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWALEDKQEMIDIIETVYRGARKGRGLVISPKDYSTKYRY 464
            MSYMLPHL NGWQVDQAI SEEDRVVVIRFGHDWDPTCMKMDE+L+SIA+K KNFA +YLVDIT+VPDFNKMYELYDPCTVMFF+RNKHIMIDLGTGNNNKINWA+EDKQEM+DIIETVYRGARKGRGLV+SPKDYSTKYRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
The following BLAST results are available for this feature:
BLAST of TCONS_00060992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TXN4A1.667e-9190.85Thioredoxin-like protein 4A OS=Homo sapiens GN=TXN... [more]
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