TCONS_00060992-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060992-protein
Unique NameTCONS_00060992-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length142

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060992-protein ID=TCONS_00060992-protein|Name=TCONS_00060992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MSYMLPHLDNGWQVDQAITSEEDRVVVIRFGHDWDPTCMKMDEILFSIAD
KCKNFAAVYLVDITKVPDFNKMYELYDPCTVMFFYRNKHIMIDLGTGNNN
KINWALEDKQEMIDIIETVYRGARKGRGLVISPKDYSTKYRY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038292XLOC_038292Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060992TCONS_00060992Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004123Dim1
IPR012336Thioredoxin-like_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..136
e-value: 4.2E-96
score: 335.2
IPR004123Dim1 familyPIRSFPIRSF017199Dim1coord: 1..142
e-value: 2.2E-75
score: 248.9
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..136
e-value: 3.3E-68
score: 227.4
NoneNo IPR availableGENE3D3.40.30.10coord: 1..142
e-value: 7.2E-33
score: 113.1
NoneNo IPR availableCDDcd02954DIM1coord: 10..123
e-value: 1.8784E-73
score: 216.392
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 3..137

Blast
[Close]
BLAST of TCONS_00060992-protein vs. Swiss-Prot (Human)
Match: TXN4A (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.192e-99
Identity = 129/142 (90.85%), Postives = 138/142 (97.18%), Query Frame = 0 
Query:    1 MSYMLPHLDNGWQVDQAITSEEDRVVVIRFGHDWDPTCMKMDEILFSIADKCKNFAAVYLVDITKVPDFNKMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWALEDKQEMIDIIETVYRGARKGRGLVISPKDYSTKYRY 142
            MSYMLPHL NGWQVDQAI SEEDRVVVIRFGHDWDPTCMKMDE+L+SIA+K KNFA +YLVDIT+VPDFNKMYELYDPCTVMFF+RNKHIMIDLGTGNNNKINWA+EDKQEM+DIIETVYRGARKGRGLV+SPKDYSTKYRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
The following BLAST results are available for this feature:
BLAST of TCONS_00060992-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TXN4A1.192e-9990.85Thioredoxin-like protein 4A OS=Homo sapiens GN=TXN... [more]
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