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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060968 ID=TCONS_00060968|Name=TCONS_00060968|organism=Clytia hemisphaerica|type=transcript|length=3207bp
ttttttcgaCCATTTGCGGTCGCAGCTGTCTTGCAAAGGTTGAAAAAGCA
ACATACTCCATCAAGAGTTGTAGAAACAGAGTTTTTGCTTCATTCAAATG
AATGGAAATATAATAATtgttgagaaatctaaaaatgaatggaaaacact
cttttgcaaattgccaaatcttccaagcccccccttaaaaaattaACCCC
CCTCTTTTTGTCCAAGCCACCCCTTTTGTGAAGGTgggggctatgtttct
agaatttagccgggggctattttccttagccccccctgaaaaatgctggg
ggctggacccctctgcacactatgagtTTGTTGAACAACCATTAAAAGAG
TGCTCAATACTCTTTGTAGAGCTAAttcataaagtttttttaaaattatt
taggTACCATCCATGGTCTATTCATATGGTCTATTCATATATCACTGTTG
AAAGTCTAAACAACTATTTTCTGAAATGTTATTTTAGGGACCTTTCAAAA
AGTATGTATGTTCAAATACAAGCAAAATTCCACCCTTCTTCCTTGTGCGT
TTGTGTACGCTTTTGCAACTACCTCCTCCTTCGTGTATGTACGCTTTTCC
AAGGACCCCCCCCcttcaaggaaaattttttgaaatgatagCAAATTTTA
TTAGCAGCTCaacaaaaaccataaaaaacaGGGAAGAAAATCATAAGGTA
GCCTAGATTcaccagaaaaagtttcagcccattgaaaactgtgaatttat
atatagttttttgagagcttatTAGGTGGTTTGAGTATATAGTTTTTTta
cctaaatttttttaatccCTTTAAAATATGAACACTTAGGTCCCAAAatt
catagcgtcagcccccctgCTGGACCTATGTAATTGGGgcgagctaaaat
ctcatcacttaacgtgggggctaaaataattcagcttgcttcaattactc
aagttgaagctcatgaatcttaaaaatttttgtctgcggcgcaatatttt
tatagaaagtgtgcaaaatattttatcttaaacttagaactgaacgcaat
ttacattggaaaacccttttttactggatcaattttttgaaagtgtctag
ggtcaaaagtcctggggtCCCCGCCCCATAATTCtttggggggggggact
taaaactcagggggaTCTAATTTTTGCCTaagacctaaacccaggctgcc
GCTATGAAAATTAGGGTTGCTCTGAAAGTTATCTCTGGCCTTCTTCCTAA
TTTCAATTCATAATATTAGGGGCAGGAAGGAAAGAATTTGCATTGCACAT
TATAAGTATTATCACTGATCAAGTCAAAAGTGGACTAAGTGAACAAAATT
TTCTGATGAATACTACTAGtactagaattttttttctctctcccTTTATG
ATTGATTTTCACAGAAAGTGGTCCCGACAGTGTGTTTCAAACAAACTGAC
CTAGTATACTTTAAGTGTACAAAGTTGGGTTAACAGAAACTTTCACAATT
CTCACAATTCTCTTAGGCCCTTTTCGTGAAATCAAATAAGCTTGAAATTT
ATGCTTTTGTCAAGTACCTTAAAGAACCTGATAATGTTTCAAAACCACAA
TGAATTTGAACCTATTTAAAGTACTGTTTTAGCCCTATGCCCTAGGACCT
TTGAAtttaaatgacaaaatttttttatcatgcTCAATGATCACAATTCT
CTAACTCTAAAATTTGTGATTCTGTTCACTGTTTGACATTGTTGTTATGG
ATTATTTAGGTAAAATCTGTCTAGTAGGAATGGAAGATGAGCTGGGTGTT
GTAGACACTGTGGACAACTCAAGAGCAAGGGCCAACAGTGACAGgaGGAC
ATGTTGGGTTTGCTTTGGAACAGACGAGGATGACCCAGGAGCGAAATGGA
TCAATCCATGCAGGTGTCGAGGTACCACCAAGTGGGTACATGATACTTGC
TTACAAAGGTGGTTTGATGAAAAACAACATGGAAATCCAGCAACTCAAGT
CTTTTGTCCACAATGTAATACGGCATACACCATTTCCTACCCTCCACTCA
GTCCACTTCTGGTATTGATTGACTATGGAGAGAAAGCAGCCAACCGAGTG
GCACCTGTAGCAGCGGCTGGAGCAGTAGTTGGTTCACTTTATTGGTCTGC
TGTGACTTTTGGTGCTGTTACAGTAATGCAAATACTTGGACATAAGGAAG
GACTGCAAGTTATGGAGGGTGCAGATCCTCTATTCTTGCTTGTTGCTTTA
CCTACTATACCCCTGGGGTTGATATTAGGAAAAATGATACGCTGGGAGGA
TAAAGTTTTACACTTGTGGAGAGAATATTCTCCCAAATGGGAATTCCTGA
ATAAAATATTTGGTGGAGGAGAAGAGAATAATGGGGCAATACGACGACAG
CCCCTTGAGAATGATAATCAAATAGATTTTGTGAACTCGACACGTGTTTT
GTGTGGTGCTTTGATGTTACCGACTTTTGCCACCGCTGTTGGCAACTACC
TTTTCAAAAGAGTTCAATCACCATTGAAACGAACTTTCATGGGTGGAGTG
TCGTTTATCTTTGTGAAAGGAATGATCAAGATCTACTACAGGCAACATCA
ATACGTTCGTTTGGCCAAGCGCAAAATCGAGGATTTCCAAGGGTCGACCA
GCGTCTAAAACTTGTAAGCAACAGTACACAGATAGTTATAAGAAGCATTG
TATTGAGAACTGGTAGGTGATTTTCATGAGCCTGGATTTTGTGAGATTTG
TATACAAAGACTACAAACATCATATATCCatttcgaaaaaagaaaaaaaa
aacttactgtCATAAGATATTTGATTGGTCATAATTatctttaaaaaggt
ttatttgTAAATAGAGTACTAGAATTTGAGCCAGTAAGGTCCCATctcca
aaaaatgtttatatgattatttgttttttttgctgaattttgcaATACAC
AAACCTAGTGAACCTCTACAAATAGACAAGAGACCTGAGAAACTCTTTCA
CCCTCAAATTTCGGAAAGCTTTTCGAAATTTCACATATCCTCAAAGACAA
AACCATTATCAAATTTGccgaaaatatttacaaaaagatacacttttaga
ttttttataaaatgaaaacaaccgAAAGTATTTTACTAtctaaaagaaaa
gttttgtagATAATCTAATTTTTGGGAGCGATAGCCCCTGatacgggggg
ggggggg Run BLAST on NCBI transcript from alignment at scaffold_350:125217..130319- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060968 ID=TCONS_00060968|Name=TCONS_00060968|organism=Clytia hemisphaerica|type=transcript|length=5103bp|location=Sequence derived from alignment at scaffold_350:125217..130319- (Clytia hemisphaerica)
TTTTTTCGACCATTTGCGGTCGCAGCTGTCTTGCAAAGGTTGAAAAAGCA
ACATACTCCATCAAGAGTTGTAGAAACAGAGTTTTTGCTTCATTCAAATG
AATGGAAATATAATAATTGTTGAGAAATCTAAAAATGAATGGAAAACACT
CTTTTGCAAATTGCCAAATCTTCCAAGCCCCCCCTTAAAAAATTAACCCC
CCTCTTTTTGTCCAAGCCACCCCTTTTGTGAAGGTGGGGGCTATGTTTCT
AGAATTTAGCCGGGGGCTATTTTCCTTAGCCCCCCCTGAAAAATGCTGGG
GGCTGGACCCCTCTGCACACTATGAGTTTGTTGAACAACCATTAAAAGAG
TGCTCAATACTCTTTGTAGAGCTAATTCATAAAGTTTTTTTAAAATTATT
TAGGTACCATCCATGGTCTATTCATATGGTCTATTCATATATCACTGTTG
AAAGTCTAAACAACTATTTTCTGAAATGTTATTTTAGGGACCTTTCAAAA
AGTATGTATGTTCAAATACAAGCAAAATTCCACCCTTCTTCCTTGTGCGT
TTGTGTACGCTTTTGCAACTACCTCCTCCTTCGTGTATGTACGCTTTTCC
AAGGACCCCCCCCCTTCAAGGAAAATTTTTTGAAATGATAGCAAATTTTA
TTAGCAGCTCAACAAAAACCATAAAAAACAGGGAAGAAAATCATAAGGTA
GCCTAGATTCACCAGAAAAAGTTTCAGCCCATTGAAAACTGTGAATTTAT
ATATAGTTTTTTGAGAGCTTATTAGGTGGTTTGAGTATATAGTTTTTTTA
CCTAAATTTTTTTAATCCCTTTAAAATATGAACACTTAGGTCCCAAAATT
CATAGCGTCAGCCCCCCTGCTGGACCTATGTAATTGGGGCGAGCTAAAAT
CTCATCACTTAACGTGGGGGCTAAAATAATTCAGCTTGCTTCAATTACTC
AAGTTGAAGCTCATGAATCTTAAAAATTTTTGTCTGCGGCGCAATATTTT
TATAGAAAGTGTGCAAAATATTTTATCTTAAACTTAGAACTGAACGCAAT
TTACATTGGAAAACCCTTTTTTACTGGATCAATTTTTTGAAAGTGTCTAG
GGTCAAAAGTCCTGGGGTCCCCGCCCCATAATTCTTTGGGGGGGGGGACT
TAAAACTCAGGGGGATCTAATTTTTGCCTAAGACCTAAACCCAGGCTGCC
GCTATGAAAATTAGGGTTGCTCTGAAAGTTATCTCTGGCCTTCTTCCTAA
TTTCAATTCATAATATTAGGGGCAGGAAGGAAAGAATTTGCATTGCACAT
TATAAGTATTATCACTGATCAAGTCAAAAGTGGACTAAGTGAACAAAATT
TTCTGATGAATACTACTAGTACTAGAATTTTTTTTCTCTCTCCCTTTATG
ATTGATTTTCACAGAAAGTGGTCCCGACAGTGTGTTTCAAACAAACTGAC
CTAGTATACTTTAAGTGTACAAAGTTGGGTTAACAGAAACTTTCACAATT
CTCACAATTCTCTTAGGCCCTTTTCGTGAAATCAAATAAGCTTGAAATTT
ATGCTTTTGTCAAGTACCTTAAAGAACCTGATAATGTTTCAAAACCACAA
TGAATTTGAACCTATTTAAAGTACTGTTTTAGCCCTATGCCCTAGGACCT
TTGAATTTAAATGACAAAATTTTTTTATCATGCTCAATGATCACAATTCT
CTAACTCTAAAATTTGTGATTCTGTTCACTGTTTGACATTGTTGTTATGG
ATTATTTAGGTAAAATCTGTCTAGTAGGAATGGAAGATGAGCTGGGTGTT
GTAGACACTGTGGACAACTCAAGAGCAAGGGCCAACAGTGACAGGCAAGA
GATATTTTTTATACACGTCAATTTTAACCTTAAAAACTTTAAAGTTCGAA
ACTATGTTGTTTGAGTGAATTTATTCGGGTCGAATATATCAGTATTACTG
ATACTGTCTTTTTGACGTTTTTTAACTGTTTTTTATAATGACTTTAGACT
TTATACCTCCATATCTCGATAACTACTTTTCCAAAATTAAAAATGATACA
TCAAAATTTAAGTTTGCCTTTCCTCTTTACCATGAAAAAAGAATTTAGTT
AAAATTCAACTTTTTCGGACATAGTTACCCTCCAAACTCTTATACTTTTT
CGTGGTTCACCCGGTAAATGGAAATTTTGATGATTTTAATTTTCAGGAGG
ACATGTTGGGTTTGCTTTGGAACAGACGAGGATGACCCAGGAGCGAAATG
GATCAATCCATGCAGGTGTCGAGGTACCACCAAGTGGGTACATGATACTT
GCTTACAAAGGTGGTTTGATGAAAAACAACATGGAAATCCAGCAACTCAA
GTCTTTTGTCCACAATGTAATACGGCATACACCATTTCCTACCCTCCACT
CAGTCCACTTCTGGTATTGATTGACTATGGAGAGAAAGCAGCCAACCGAG
TGGCACCTGTAGCAGCGGCTGGAGCAGTAGTTGGTTCACTTTATTGGTCT
GCTGTGACTTTTGGTGCTGTTACAGTAATGCAAATACTTGGACATAAGGA
AGGACTGCAAGTTATGGAGGGTGCAGATCCTCTATTCTTGCTTGTTGCTT
TACCTACTATACCCCTGGGGTTGATACTAGGAAAAATGATACGCTGGGAG
GATAAAGTTTTACACTTGTGGAGAGAATATTCTCCTNTATTTTTTATACA
CGTCAATTTTAACCTTAAAAACTTTAAAGTTCGAAACTATGTTGTTTGAG
TGAATTTATTCGGGTCGAATATATCAGTATTACTGATACTGTCTTTTTGA
CGTTTTTTAACTGTTTTTTATAATGACTTTAGACTTTATACCTCCATATC
TCGATAACTACTTTTCCAAAATTAAAAATGATACATCAAAATTTAAGTTT
GCCTTTCCTCTTTACCATGAAAAAAGAATTTAGTTAAAATTCAACTTTTT
CGGACATAGTTACCCTCCAAACTCTTATACTTTTTCGTGGTTCACCCGGT
AAATGGAAATTTTGATGATTTTAATTTTCAGGAGGACATGTTGGGTTTGC
TTTGGAACAGACGAGGATGACCCAGGAGCGAAATGGATCAATCCATGCAG
GTGTCGAGGTACCACCAAGTGGGTACATGATACTTGCTTACAAAGGTGGT
TTGATGAAAAACAACATGGAAATCCAGCAACTCAAGTCTTTTGTCCACAA
TGTAATACGGCATACACCATTTCCTACCCTCCACTCAGTCCACTTCTGGT
ATTGATTGACTATGGAGAGAAAGCAGCCAACCGAGTGGCACCTGTAGCAG
CGGCTGGAGCAGTAGTTGGTTCACTTTATTGGTCTGCTGTGACTTTTGGT
GCTGTTACAGTAATGCAAATACTTGGACATAAGGAAGGACTGCAAGTTAT
GGAGGGTGCAGATCCTCTATTCTTGCTTGTTGCTTTACCTACTATACCCC
TGGGGTTGATATTAGGAAAAATGATACGCTGGGAGGATAAAGTTTTACAC
TTGTGGAGAGAATATTCTCCCAAATGGGAATTCCTGAATAAAATATTTGG
TGGAGGAGAAGAGAATAATGGGGCAATACGACGACAGCCCCTTGAGAATG
ATAATCAAATAGATTTTGTGAACTCGACACGTGTTTTGTGTGGTGCTTTG
ATGTTACCGACTTTTGCCACCGCTGTTGGCAACTACCTTTTCAAAAGAGT
TCAATCACCATTGAAACGAACTTTCATGGTAAGTTTTAGGGCGATCATTT
CTGTTTTTTAAAACTTTGTGATTTAATTGATTTGTTGCTTTCAGGTGGAA
AGTTCTAGGTAAACTATAGTTGTGTTCGTCTGTCAGCCAAAATTTGTTAG
ATTTGGACAGTAATGTAAATATCAGAGGGGGATGCTCAAAGTGCAAATTG
AGCTTTAGAAGATTAATTTAAATAAGATTTGTTTCTGGGATGTTCGGGTT
GTTAATTTCCATGCAATACTTTAGGCATACAAACTTTCGCGAGCAGAAAC
TTCCGCGATTTTCGCGAATTTTGGCCTTTTTCGCGAATATAAATGTCTTT
AAAAATTCTAGGAAAAATTCGCGAAAAATTCTTGACAAAATAGTAAAATC
TGTAAAACTTCAAACTTTGAAGAAAATGTAACTTTTATGGCAATTTTTAG
CCTGCTAAAAGACTAATAAGTCAAAGGACAAAGGTTTTAAGTCAATCCAA
GGCAAGAAGCATTTGTCTCTCTAAGCCATTTTTTCATGTGAAAATTCTCA
ATTTTACGTCTTGATTCGCGAAAGTTTATGCTCGCGAAAAATATTTTTTC
GTCAATTTCGCGAAAGTAAATGTCGTCAATTTCGCGATTTTTCGTCCTCG
CGAAAGTTTTTGCTCGCGAAAGTTTGTACGTCTAAAGTAGTTTCTTATTT
GTGTTGATTTGATATATTTGCTTTATTTGCGTTAAAGGGTGGAGTGTCGT
TTATCTTTGTGAAAGGAATGATCAAGATCTACTACAGGCAACATCAATAC
GTTCGTTTGGCCAAGCGCAAAATCGAGGATTTCCAAGGGTCGACCAGCGT
CTAAAACTTGTAAGCAACAGTACACAGATAGTTATAAGAAGCATTGTATT
GAGAACTGGTAGGTGATTTTCATGAGCCTGGATTTTGTGAGATTTGTATA
CAAAGACTACAAACATCATATATCCATTTCGAAAAAAGAAAAAAAAAACT
TACTGTCATAAGATATTTGATTGGTCATAATTATCTTTAAAAAGGTTTAT
TTGTAAATAGAGTACTAGAATTTGAGCCAGTAAGGTCCCATCTCCAAAAA
ATGTTTATATGATTATTTGTTTTTTTTGCTGAATTTTGCAATACACAAAC
CTAGTGAACCTCTACAAATAGACAAGAGACCTGAGAAACTCTTTCACCCT
CAAATTTCGGAAAGCTTTTCGAAATTTCACATATCCTCAAAGACAAAACC
ATTATCAAATTTGCCGAAAATATTTACAAAAAGATACACTTTTAGATTTT
TTATAAAATGAAAACAACCGAAAGTATTTTACTATCTAAAAGAAAAGTTT
TGTAGATAATCTAATTTTTGGGAGCGATAGCCCCTGATACGGGGGGGGGG
GGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00060968-exon-scaffold_350-1575043694:128476..130319 | TCONS_00060968-exon-scaffold_350-1575043694:128476..130319 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1575043694:126592..127288 | TCONS_00060968-exon-scaffold_350-1575043694:126592..127288 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1575043694:125217..125882 | TCONS_00060968-exon-scaffold_350-1575043694:125217..125882 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1510915933:128476..130319 | TCONS_00060968-exon-scaffold_350-1510915933:128476..130319 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1510915933:126592..127288 | TCONS_00060968-exon-scaffold_350-1510915933:126592..127288 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1510915933:125217..125882 | TCONS_00060968-exon-scaffold_350-1510915933:125217..125882 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1491911889:128476..130319 | TCONS_00060968-exon-scaffold_350-1491911889:128476..130319 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1491911889:126592..127288 | TCONS_00060968-exon-scaffold_350-1491911889:126592..127288 | Clytia hemisphaerica | exon |
| TCONS_00060968-exon-scaffold_350-1491911889:125217..125882 | TCONS_00060968-exon-scaffold_350-1491911889:125217..125882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:125217..130319 - |
Blast
BLAST of TCONS_00060968 vs. Swiss-Prot (Human)
Match: MARH5 (E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 7.708e-99 Identity = 151/264 (57.20%), Postives = 194/264 (73.48%), Query Frame = 1
Query: 1846 RTCWVCFGTDEDDPGAKWINPCRCRGTTKWVHDTCLQRWFDEKQHGNPATQVFCPQCNTAYTISYPPLSPLLVLIDYGEKXXXXXXXXXXXXXXXGSLYWSAVTFGAVTVMQILGHKEGLQVMEGADPLFLLVALPTIPLGLILGKMIRWEDKVLHLWREYSPKWEFLNKIFGGGEENNGAIRRQPLENDNQIDFVNSTRVLCGALMLPTFATAVGNYLFKRVQSPLKRTFMGGVSFIFVKGMIKIYYRQHQYVRLAKRKIEDF 2637
R+CWVCF TDEDD A+W+ PCRCRG+TKWVH CLQRW DEKQ GN +V CPQCN Y I +P L P++ ++D ++ ++ P AAAG +VGS+YW+AVT+GAVTVMQ++GHKEGL VME ADPLFLL+ LPTIP+ LILGKMIRWED VL LWR+YS K + LN IF G + R P E + D V++TR+LCGAL+ PT AT VG +F V S L+RT +GG++F+ +KG K+Y++Q QY+R A RKI ++
Sbjct: 12 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILNSIFPG---IGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTILGGIAFVAIKGAFKVYFKQQQYLRQAHRKILNY 272
The following BLAST results are available for this feature:
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