TCONS_00060950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060950
Unique NameTCONS_00060950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060950 ID=TCONS_00060950|Name=TCONS_00060950|organism=Clytia hemisphaerica|type=transcript|length=438bp
TGAAAAGATGTATTGCTACGAGAAGGCGCGAGcGAAATACCAGGATGAGA
ATCGCGAGGAATGTTGGTTTCAAAGATGTCCACGGGAATGCACCAACGTC
AAGTACAGACTCATGAAATCGAGTGTTGCTCTTGGCAACCGAAGGATTTA
CAACAATTTAGAACGCATGCCCGAATGGAACTACACACTTCAACAAACGA
AAGAATACATCAGGAAAAACATTGTTGGTATCCACGTCTCATTTCACGAT
TATTCAGCGCTGGTAGAAATCGCACTTCCTGCTGTTACTTGGACCACTTT
ATTCGGTTCTATTGGAGGTTCGATCGGTCTTTGTCTTGGTTTCAGTTTGA
TTACCGGATTCGAATTCTTGTTCTTTATTTACGATTACATCACCATGCct
tggaaaataaaaagaaggGGCGAGCTTTGAAATTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00060950-protein

>TCONS_00060950-protein ID=TCONS_00060950-protein|Name=TCONS_00060950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
EKMYCYEKARAKYQDENREECWFQRCPRECTNVKYRLMKSSVALGNRRIY
NNLERMPEWNYTLQQTKEYIRKNIVGIHVSFHDYSALVEIALPAVTWTTL
FGSIGGSIGLCLGFSLITGFEFLFFIYDYITMPWKIKRRGEL
Run BLAST on NCBI

transcript from alignment at scaffold_350:151138..153308+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060950 ID=TCONS_00060950|Name=TCONS_00060950|organism=Clytia hemisphaerica|type=transcript|length=2171bp|location=Sequence derived from alignment at scaffold_350:151138..153308+ (Clytia hemisphaerica)
TGAAAAGATGTATTGCTACGAGAAGGCGCGAGGTAAGAGTAAAAAATTAA
CTCTCTCTTCCGATTATTCAAATCCATGATCCTACCATGTTCCCATTGCA
AGACTTTTCAAAGGCGCGCTTGATATTTATTTGAAGGGCTCCTTCAAAAG
GAAGAAGAAAGGATCTTTCCCAACGATGCGTGGATCTTATTGATCCTTTC
CTTGGATTATTGTCTATTCTAAGATAGGCAAATTATTGCACTTACCAGAT
ACTGTCGGCCCTGTGCTTAGACAGATCCATAGCCTATCGGTGACATTACT
CTAACAAGCGGTAGAAGGACAATTTCTCTCGCAAGCTCATCCATGCAAGA
TACATACACTCCTTCTTTGGAATGCTGGACTCCCGTGCGGGAATGTCGAA
AAAGACAACAATAACACCTCTACGCCTTTAAAAGGCTAACTTTACTTTTC
CCAATAAATTTTCCTATAAGTTTGATGGAGAGCGTTATATGAATAAGgtt
tgtttgttgttgatgAAATTTCATGCAACCGGTgctgtttcttttgtttt
tgtagcGAAATACCAGGATGAGAATCGCGAGGAATGTTGGTTTCAAAGAT
GTCCACGGGAATGCACCAACGTCAAGTACAGACTCATGAAATCGAGTGTT
GCTCTTGGCAACCGAAGGATTTACAACAATTTAGAACGCATGCCCGAATG
GAACTACACACTTCAACAAACGAAAGAATACATCAGGTAGATTTCTTTGT
CATCCATTCTCTGATGCTTGAAAAAATTGTTATCGGCCAGAggcaaaatt
ataaaaaactttCATGAAACCTATAAAAAATCTTCCCGTATCAATACAAA
CGTACAAAcatatactttaggcgtacaaactttcgcgagcagaaactttc
gcgaggacgaaaaatcgcgaaattcacgacatttactttcgcgaatttaa
cggaaaaatatatttcgcgagcataaactttcgcgaatcgagACGtagaa
ttgagaattttcacatgaaaaaatggcttagagggacaaatacttcttgg
attggtcttgtcctttgacttattagtcttatagCAGGCTAAAAactgcc
ataaaagttacattttattcaaagtttgaagatttacaaattatctattt
tgtaaagaatttttcgcgagcataaactttcgtgaatggcccttcctaga
attttttaaTACATCTACTTTcgcaaaaagggccaaaattcgcgaaaatc
gcgaaagtttctgctcgcgaaagtttgtacgcctaaagtagcaATTTCAA
CAAGTGGGGTcaaaattcgagaaaaatatTCTCTTGTTTACGCCCTTTGT
ATTAACGTCGATACACAATATTGCAAGATTTCGAATTATAACTTTTAAAG
CTATATACCTTTAGGTTTAGCAAACTGAATCGCTAATGATAATTCCAGTG
CGACTTTTTTTGTTCCCAACTACAGTATGATTTCCGTTCATTAAAGTCAA
GAATTAAGTTTCTAAAAGTGATGTGTAATTCTAGACATTTCTTACAAAAT
CATACCTTTTAACACTGTATTTTTTATGGTTTTCAGGAAAAACATTGTTG
GTATCCACGTCTCATTTCACGATTATTCAGCGCTGGTAGAAATCGCACTT
CCTGCTGTTACTTGGACCACTTTATTCGGTAAGGGAAAAATCCTTTGACA
AGATGTTTTAATCTACATGCTACACGCTAATTCCGATGTCACGCTCAGAT
AAGAGACAAAAGTCATACGTCTCTTACCGCTTGTCCATCTTTTGAACTTT
TACTGTGGGACTTGATCGATTACTTCAATggggtaaattagccaaaactC
GAACCCAGTTCCTTAGTTCGCGTTTTATGATACTGATCGTGATAGTGCTC
ACGTATGACGTCCATCAATCAAAAAGTGGTACATATGGCTCTGGCTATGA
GGTTGTGTTTCACCAAAATGTAATCTTTCGCAGAACTTGACActgttata
ttattttcatcaccTGTCCatctttactttattttcaGGTTCTATTGGAG
GTTCGATCGGTCTTTGTCTTGGTTTCAGTTTGATTACCGGATTCGAATTC
TTGTTCTTTATTTACGATTACATCACCATGCcttggaaaataaaaagaag
gGGCGAGCTTTGAAATTTGAA

Coding sequence (CDS) from alignment at scaffold_350:151138..153308+

>TCONS_00060950 ID=TCONS_00060950|Name=TCONS_00060950|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_350:151138..153308+ (Clytia hemisphaerica)
GAAAAGATGTATTGCTACGAGAAGGCGCGAGcGAAATACCAGGATGAGAA
TCGCGAGGAATGTTGGTTTCAAAGATGTCCACGGGAATGCACCAACGTCA
AGTACAGACTCATGAAATCGAGTGTTGCTCTTGGCAACCGAAGGATTTAC
AACAATTTAGAACGCATGCCCGAATGGAACTACACACTTCAACAAACGAA
AGAATACATCAGGAAAAACATTGTTGGTATCCACGTCTCATTTCACGATT
ATTCAGCGCTGGTAGAAATCGCACTTCCTGCTGTTACTTGGACCACTTTA
TTCGGTTCTATTGGAGGTTCGATCGGTCTTTGTCTTGGTTTCAGTTTGAT
TACCGGATTCGAATTCTTGTTCTTTATTTACGATTACATCACCATGCctt
ggaaaataaaaagaaggGGCGAGCTTTGAGAAAAGATGTATTGCTACGAG
AAGGCGCGAGcGAAATACCAGGATGAGAATCGCGAGGAATGTTGGTTTCA
AAGATGTCCACGGGAATGCACCAACGTCAAGTACAGACTCATGAAATCGA
GTGTTGCTCTTGGCAACCGAAGGATTTACAACAATTTAGAACGCATGCCC
GAATGGAACTACACACTTCAACAAACGAAAGAATACATCAGGAAAAACAT
TGTTGGTATCCACGTCTCATTTCACGATTATTCAGCGCTGGTAGAAATCG
CACTTCCTGCTGTTACTTGGACCACTTTATTCGGTTCTATTGGAGGTTCG
ATCGGTCTTTGTCTTGGTTTCAGTTTGATTACCGGATTCGAATTCTTGTT
CTTTATTTACGATTACATCACCATGCcttggaaaataaaaagaaggGGCG
AGCTTTGAGAAAAGATGTATTGCTACGAGAAGGCGCGAGcGAAATACCAG
GATGAGAATCGCGAGGAATGTTGGTTTCAAAGATGTCCACGGGAATGCAC
CAACGTCAAGTACAGACTCATGAAATCGAGTGTTGCTCTTGGCAACCGAA
GGATTTACAACAATTTAGAACGCATGCCCGAATGGAACTACACACTTCAA
CAAACGAAAGAATACATCAGGAAAAACATTGTTGGTATCCACGTCTCATT
TCACGATTATTCAGCGCTGGTAGAAATCGCACTTCCTGCTGTTACTTGGA
CCACTTTATTCGGTTCTATTGGAGGTTCGATCGGTCTTTGTCTTGGTTTC
AGTTTGATTACCGGATTCGAATTCTTGTTCTTTATTTACGATTACATCAC
CATGCcttggaaaataaaaagaaggGGCGAGCTTTGAGAAAAGATGTATT
GCTACGAGAAGGCGCGAGcGAAATACCAGGATGAGAATCGCGAGGAATGT
TGGTTTCAAAGATGTCCACGGGAATGCACCAACGTCAAGTACAGACTCAT
GAAATCGAGTGTTGCTCTTGGCAACCGAAGGATTTACAACAATTTAGAAC
GCATGCCCGAATGGAACTACACACTTCAACAAACGAAAGAATACATCAGG
AAAAACATTGTTGGTATCCACGTCTCATTTCACGATTATTCAGCGCTGGT
AGAAATCGCACTTCCTGCTGTTACTTGGACCACTTTATTCGGTTCTATTG
GAGGTTCGATCGGTCTTTGTCTTGGTTTCAGTTTGATTACCGGATTCGAA
TTCTTGTTCTTTATTTACGATTACATCACCATGCcttggaaaataaaaag
aaggGGCGAGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038261XLOC_038261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060950-exon-scaffold_350-1491911889:151138..151169TCONS_00060950-exon-scaffold_350-1491911889:151138..151169Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1510915933:151138..151169TCONS_00060950-exon-scaffold_350-1510915933:151138..151169Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1575043694:151138..151169TCONS_00060950-exon-scaffold_350-1575043694:151138..151169Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1491911889:151693..151873TCONS_00060950-exon-scaffold_350-1491911889:151693..151873Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1510915933:151693..151873TCONS_00060950-exon-scaffold_350-1510915933:151693..151873Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1575043694:151693..151873TCONS_00060950-exon-scaffold_350-1575043694:151693..151873Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1491911889:152724..152815TCONS_00060950-exon-scaffold_350-1491911889:152724..152815Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1510915933:152724..152815TCONS_00060950-exon-scaffold_350-1510915933:152724..152815Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1575043694:152724..152815TCONS_00060950-exon-scaffold_350-1575043694:152724..152815Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1491911889:153176..153308TCONS_00060950-exon-scaffold_350-1491911889:153176..153308Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1510915933:153176..153308TCONS_00060950-exon-scaffold_350-1510915933:153176..153308Clytia hemisphaericaexon
TCONS_00060950-exon-scaffold_350-1575043694:153176..153308TCONS_00060950-exon-scaffold_350-1575043694:153176..153308Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060950-proteinTCONS_00060950-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:151138..153308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.309849	0	0.175414	0	0	0.165095	0.59754	0.37294	0.391656	1.29368	0	0.619074	0.103036	0.428014	0.527828	0.472034	3.95425	3.93377	0.164688	0.172334	4.94307	8.10991	0.532901	1.77644	1.16435	0.445352	0.212432	0.226714	0.171954	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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