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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060936 ID=TCONS_00060936|Name=TCONS_00060936|organism=Clytia hemisphaerica|type=transcript|length=1173bp
ATATCGATCTGGCTGCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAA
CACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAAT
CACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGT
AAAGAAAGATTGGAAAACTATACTGACACAAAAGGGCCACCACGTAATCG
AACTGAACTGCGTCGTGAAGATCGACCGAATCCTAAAAACCGAACGGATG
CTGAAAGAACGCTGGCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGAC
GTGCAAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGA
AGACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGTG
GTATTAAACCAGAAGTGCAGCCCTgcggaaaatcaaaaaaaataatcatc
CGCAAAGTTCGTAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATT
AGCGATACAGAGGAAGAAGAAAAGACAAGAAGCTTTGATgaagaagagaa
agagagaaGAATTAATAAGAATCCAACCCTCGTTGGAGGAATTGGAAGAT
ATCAAACATATTCTGGAAGATAATTTGGAAGATGAGAATGCAGAGGAAGA
ACAAGATGAAAATTTAGaggaagatgaagatgaagaaggcgAGAATCGAT
TCAAGAGAAGTTCAAACCAACCACAAAACGACCAACCTAAAACCTCCAAT
CATCATCGCTCACGAAGAAGCCTCGTACAGAATTTAGACGTCGTGCGCAT
GCGTAGATCTTTGTCGTATACGTATTCTAATGAAGGGTCGTGTTTCGTTG
AAGGTTCGGAAGGGAGTACGAGCGATACTATCCTGCTTTGTGAAACTTGC
TACAAAACGGTGGATTTCGGAGAGAGTGTAGTTCCGCAGTACGCGAATAG
CGTTGAATGTTCGGATAGCGCGACCATGTGTATCAGTGGAGATGGAACAT
GCACGCAGAAAGTCATATATTATTCCTTCAAGAAATTAGTTGATTCCGTA
TCGAACACTTGGGAAAGCTACCAGCAACCACTGAATGTCAGCTGTGAATG
TGAATGTATCGCGAATTCAATGACTCACATGTATATGGTTGGTGACTCAA
ATTAAAAACTCAACtcgtgaaaa Run BLAST on NCBI transcript from alignment at scaffold_350:43578..52167+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060936 ID=TCONS_00060936|Name=TCONS_00060936|organism=Clytia hemisphaerica|type=transcript|length=8590bp|location=Sequence derived from alignment at scaffold_350:43578..52167+ (Clytia hemisphaerica)
ATATCGATCTGGCTGCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAA
CACCTTGGACATCAAGTACAGCAAACAAGAACTTGTCAACCTTCTTGAAT
CACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGT
AAAGAAAGATTGGAAAACTATACTGACACAAAAGGGCCACCACGTAATCG
AACTGAACTGCGTCGTGAAGATCGACCGAATCCTAAAAACCGAACGGATG
CTGAAAGAACGCTGGCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGAC
GTGCAAGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGA
AGACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGTG
GTATTAAACCAGAAGTGCAGCCCTgcggaaaatcaaaaaaaataatcatc
CGCAAAGTTCGTAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATT
AGCGATACAGAGGAAGAAGAAAAGACAAGAAGCTTTGATgaagaagagaa
agagagaaGAATTAATAAGAATCCAACCCTCGTTGGAGGAATTGGAAGAT
ATCAAACATATTCTGGAAGATAATTTGGAAGATGAGAATGCAGAGGAAGA
ACAAGATGAAAATTTAGaggaagatgaagatgaagaaggcgAGAATCGAT
TCAAGAGAAGTTCAAACCAACCACAAAACGACCAACCTAAAACCTCCAAT
CATCATCGCTCACGAAGAAGCCTCGTACAGAATTTAGACGTCGTGCGCAT
GCGTAGATCTTTGTCGTATACGTATTCTAATGAAGGGTCGTGTTTCGTTG
AAGGTTCGGAAGGGAGTACGAGCGATACTATCCTGCTTTGTGAAACTTGC
TACAAAACGGTGGATTTCGGAGAGAGTGTGTAAGTTTTCCTTCCTCATTC
ATCTTCTTTTCCTTTGAAGATTAGACTTGGCATGCTTTGCTTTtatttct
ctcttcttttttgTATGAATATTTGCCCTGGTGCGTCTCATTGATGCTTA
ACTGTATACCTTACACCATATCTACCTCGTTGGGGTAGGGGGACAAATAA
GCACCCCCCTGCTAGAATTTAGAAGGTGAAGGTTATGACGACGATTGCTA
GTTTTTGTCTTTCATGtaactgttttcttttttagagtTCCGCAGTACGC
GAATAGCGTTGAATGTTCTGATAGCGCGACCATATGCATTAGTGGAGATG
GAACATGCACGCAGAAGGTCATCTATTACTCCTTCAAGAAATTAGTGGAT
TCTGTTTCGAACACTTGGGAAAGCTACCAGCAACCACTGAATGTCAGCTG
TGAATGTGAGTGTATTGCGAATTCGATGACTCACATGTATATGGTTGGTG
ACTCAAATTAAAAACTCAActcgtgaaaaaaaaaaaaaaaaaaaagattt
tacaagAATTGCATAATAAATGCATGATGAACTATCCAATGAAGTGGTTA
GCACTGTGAAAAGTTGAGAAAGCTCTTGAGTTTAATAATTTTTGCATCAT
TTGACTGATTAGCAATtatattcaataaaatatttaatttaataataatt
tatatAATTATATTAATTTAAGCTGGAAAATTTATCGTAAAATATTCAAA
GTTCTCTCACTCCTCATTTGCTTGTTTAACTACTCTAACAAATTCACCGT
GGGCTTCCAAAACGGTTTACAGCTCACTGCATTCCCAAGGGTTGAGAGTG
GGCTATCGATCTATGGGAATAAAGAGAAAACGTATTCCCTTTAAGAAAGA
ATCATCGTCACTTGGTGACGTAACGTTCGTTTAAGAGTATGCAGTCATTA
TTTGACATTGCATGCTCGTTTGGAATCTTGCGACTTTCCATTCTTATTGG
TGTTCAGACAATTGCGTGCTTCTTGTGCCCTAGTGCGTCTCGTTCCTTTG
TGGGTAGTTCATGGGACCGAAAAAAATGATGGTTGGTAGTTGGTTGGTCC
GAGAaagcaaagatttattatacactggataaacgactcaaaAAACGAGG
GATAGCGAtcattgtaatttcattgtttcagaaaacaattgctgttctag
ctttgtccgcaaaggacaactgtcatggcggctcgaaggtgtctgattta
aaaaaatgtttatcagtcttatttttaaaaagttctctagctctttcttt
ctgtacatttgcagaaaaaaaagtttgaaagtaagtcGAGTATTCCAAGG
Cacatacatttgtgaaatctaatgtgagaaaaacatcattagacaagaaa
ttcagccaaaatgcttatagtgacacaaaGTTTTCAatcggaaatatctt
tccaagactgtcctcGTAAGAGCTGAAATcaacatacataagacttgagt
gtcttggctccactgtggtatgaaaatcctttggaggcacgtggtggcaa
ggtgtttttttttaggttgaagtttgaaaatttccggtgtcaacattaaa
tttcttatatacaacacgtcttttgcatctttctcacagcttgaaacgtc
ataacgacttattattatcaattaagtggaagaatccgactctcacagga
aagttttaaatctcttttgggaattggatgagtgattttcgatatgaaat
gcaataaaaatgcttcgaaaaatcatttaatgagggaaggagagtgaaca
atactatcattactgcggacatagctagtacacgagaaatcggcaaaaat
ctgttacttgtatatccagtgtataataaatccttgatcATAtactaaaa
ggttttttgcTTTCGGTAACTGAGATACAGGAGACTAAGTTCTGATGAGT
TTAGAAGAGGAGACAAAGTGCCGGGTCCGCTGACAGCTAATAGATGAGTA
TCAAAAGTATAATCATTGTCCTTGCTACATATATGCTCCATTTAGAGAAG
TCTGAATCATAGATAATATAGGACCTGGAGGGGAGGGCACTCAAGGTAAG
AGACCTACCATAGAGTGCGACCCTTAAGGGTACGTTTTTACGCTTCCCAA
AGTGCATTATAACATGTAAGTGTCAAAATTAGGAAAAGTGCAAGAAAATA
CCTTGCATGAGTATAAAAAGTGTGAAGAACAAAGCTTTTTGGGCAAAGTA
TTCCAAAATCTCACCATTATTTGCCCAATAATTTCTTTAAAGGTACaaaa
tttccaagaaaatgcAGAGGCGACTTTTTGCCTGAATTtactaaaatttg
gctgaattttctTTGTAGGGTCTGATTTTAAAGACCTAATTTTGGCCATA
CATACGGTAGTTTCCTGATCGAGTGCCCGAGGAGCACGAATccattactc
tcgggtacctaatagccgccccccgccccccgctaattaacttttgggaa
aatgtttttgaaagtttcctcttttgtcctaattctgctgtattagcctc
cttttcaaaaattttccacccaggacagttttattccaaccctcccgctt
attaagttttgaggtTTTTTCCATACCCCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccccccccccccgcttattccaaacccaccggctattaggtacc
ccaGAGTAATTAGTGTGGATGTCAGCATCCTCGTGTATGGTTGTTAACTT
ACCAGTGCCTACAACTTCATACCTCCACACTATCCACGCTTGTCCACATT
AAGACCATAAAAATAAGACTTGAAAAAGTGTCACACTCCACTTATTGAAA
AATctaattattttgatattttgcaaaaaacttaAAGATACCCTTACATT
TCCCAGGCCTTCAATAGGGTTTCCTACTACATTTATTTCACTCGATgtct
tctttgaaaaaatgtattGTCTTTGGGAGAAAAACATTTCCTGGCtattt
gaagaaactttttcaGGTTctatatttttgatgacgcaTTAGCAAAGCAT
ATTACTGGAAAGTGAAATCCACGTAtctatcacaggaaaaaattttcaat
ttccaaggttggaaatttcaagttttcttagttggaaaaaagataaaatc
caatggaaaaatCCAATCTGGAAATGTGGGACattttccaaggttggaaa
ttttgcattttccatggcttggaattttcaaaaatctaggttgaaaaaag
cctaaatccaaaaagtgatggcagagatgtggaaaaaatgatcttaaaca
aggtttttgtttttgtgaacagtaactcgctagcctaggctcgatggctc
ccggtcaatctctggTTATTGTTCGCatagatacgtggttgatcttagat
cactgtgcgaactcaccgcgattgaccgaggccgctccgaagagacgcct
cacctgacggaaacttacagcttgactgctcacatattaaggccgctacc
cactcagtATTTTATGGTCGGCGAACAAGGCGCACAGGCTCGGGCGCTTT
GGTCGCTGAACGCTTTTCCCATTCcacacattttttcttttttctattgt
tgatattttttgcacacggtacaagagagttaaatgtctcttctgattgg
ctatttaaaaaagaacaatagggaaGCCGCACAGCCtagcaaaaaaagtt
aaaaagtttcaactcttgttgCGCTCAAAGCGAGAGCCCACGAAGgcttg
atttatgtaatttatgcaataattaagccGTGCGCCTTGTACGACCATAA
AATTCCgagtgggtagcggccttttatagcctaatatctaggttagccat
acatcaaaacagttttgaacgaaaaatcgcttgtggttttctcaaaggac
atgtgcagaaaatggttacaaaaacgtaatttctacatgggtttttaacg
ttttccaaactgtttgggagaaacacaaatttccgacccaaaaagtctag
tctTTCAACCCGAGGTagcaaatttacaaaaatatgtattttcacattgA
TTTTTGACCTTATTTTCgattcccaaactgtttggaaaataaagatttcc
cacccaaaaagtcatgttttccaaccagccttggaaaattgtcatttcta
catgggtttttttcacttgatttttcaagggcattggtttattctacaaa
acctatgggtaatttacgttttccaaatcagcttaaggtaatcgctcaaa
tttccaaccctcaattataaaaccaaaatttccaacccaaaaatattgaa
tttccaaccctGGAAATCGAAAAGTTTTTCCTGtgataattttgagattt
taaccaatcagattagTCCTATGCCAGTACTTTTAACTAGCTCAGTAAAG
CGGAAGTAATTTctctttcatcatttttttttttgcattcccAAACCGGA
GgcgttggaaaggttttttatAACCAAGGGATTATTCAATTATTCAATCA
TTAAAGAATATTAAGAAAGTCGattcatatttttttgaaagcaTCATTAA
ATGATTATGTTGGCCCTATGTTGGAGTTGCTACTTATGTACTTAATTAGT
ttattattttaacaaaaaaaaatgcttttatttCCCGTGCCATGGCCGTG
CGATTTCACTCTTTTCTGTtaaatcgtttttttttctataacaCAAATTG
TGTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATTC
GATCTTTGGTGAGAATATTTTTTCGATTAAAACTTTTTGGTATTTATACA
GAGGTTCTTTCTTACCGGAAAGATTTCTATCCTATTTGAATATTGAGATC
TCGGACAGTTTGTGTCAACGGAGCAGACTTAGTTTTGGCCTTTTTTATCC
CCGGATGCCTAAgctcaaaactgaaaaaaaatattacccCATCCATGCGA
TTTTCAGTTATAAATTTGATTTAGATTCTTAAGTTTGCAATATATgtagg
ggggggtttcagggggtacccgattccgcaattccgtcaattttttctcc
aatttccgtcaaaccgtcttaaattgaaccaaaattccgtcacccaaaat
tcctttgaaattcaatatttttgtcgaaaattccgcaaattttgaataTC
TTTTactaattccgaaattccgcaaatttttttgctaaattccgtttttc
cgcactaaaattgtctaattttccgtctccgtcagagaacccaatttccg
taattccgattccgctcctccgccaaccgtgAAAACCCCCCTATGtagat
tgcttgaaaaagaaaagttacTTGATTTGTTTCATGCAAATTATACACTT
AATTGTATAAAAGAATAATTCGAGGCCTGTTTtccctaaaatcaaaataa
atcgatCTCGGAAGGTGGTACAATTACAATTACACCACACTACTCTAtgc
tttcatttttgatttttcatctcCGTATATTAACACACCCTGATGTGTCA
CAGACCGGCTGAAACCCCAATCCACTAGAATATGGCTAAATGTTTGCCCC
CGCTAGGAAGAATATCCTACAAGCTCAGTCCCGCTGGGAAATCGACTTTG
AattcactccaaaaccatccccactggattttttaagccTGGAGCAGtac
aatttttatccccatcgGGATTTTGATAAGAACTTTTACCCCTGCTGTGG
GATAAAGCTCCACCGAGGCTGTAGGACAGGGGTCTATTAAAACTTAGTAT
CACAAATTATACTTGGGTAAACTAAGTGGAAGTGACCTACCTCTATAACA
ACATGCCATAGAGCAACAACCAAGAGAACGGTTGTAAAATATACTCAACA
TAATAAACCAAACCAAGAAATCCAGCAAATTAACTTATAAatcacaaaaa
gaaaaatttccatTGAGAGCAAATGAGATCGTGGTGAATTAgctttgaaa
acattttaactTTATAGCTGGAATCATTCGGTGTATTTTGTAAATATGAG
ACAAAATAAGAGCTTGAAAACTGATACCGCCCTTTCAAATAATagaaagt
tgacaaaaaaatcatttcattttatagCAGGTGTTAATAAATTTTTTGGT
TCGTATTATAAAATGAAGCAAcaataaaatagaataaaatgaaggataaa
tttgaaaaagtttttgccTTTAACTGATTTGAAAGTTTTATATGAATAAG
ATATGATGAGAAAATacttttgacatatttttttgcttttaccTATTCAG
ATATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCATCCAACAC
CTTGGACATCAAGTACAGCAAACAAGAACTTATCAATCTTCTTGAATCAC
TAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAAA
GAAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTAATCGAAC
TGAATTGCGTCGTAAAGATCGACCGAATCCTAAAAACCGAACGGACGCTG
AAAGAACGCTGGCGAAAGCTCAACACCGTTTATCAAGAGGTAAAGACGTG
CAGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAGA
CTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGGTA
TTAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGTAAAGTTCGT
AGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGAtacagaa
gaagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGAAGAAT
TAGGAAGAATCCCACCTTCTTTGGAGGAACTGGAAGATATCAAACATATT
CTGGAAGATAATTTGGAAGATAAGAATGTAgaggaagatgaagaagaaga
aggcgAGAATCGATTCAAGAGGAGTTCAAACCAACCACAAAACGATCAAC
CTGAAACCTCCAATCATCATCGCTCACGAAGAAGCCCCGTACAGAATTTA
GACGTCGTGCGCATGCGTAGATCTTTATCGTATACGTATTCCAATGAAGG
ATCGTGTTTCCTTGAAGGTTCGGAAGGGAGTACGAGCGATACTATCCTGC
TTTGTGAAACTTGCTACAAAACGGTGGATTTCGGAGAGAGTGTGTAAGTT
TTCCTTCCTCATCTTCTTTACCTTTGAAGATTAGACTTGGCATgctttgc
ttttattttttctcttcttttttgtaTGAATATTTGCCCTGGTGCGTCTC
ATTGATGCTTAGCTGTATACCTTACACCATACCTGCCTCGTTGGGGTAGG
GGGACAATAAGCACCCTCTGCTAGAATTTAGAAGGGGAAGGTTATGGCGA
CGATTgctagtttttttcttttatgtaaCTGTTTTCTTTCTATTAGAGTT
CCGCAGTACGCGAATAGCGTTGAATGTTCGGATAGCGCGACCATGTGTAT
CAGTGGAGATGGAACATGCACGCAGAAAGTCATATATTATTCCTTCAAGA
AATTAGTTGATTCCGTATCGAACACTTGGGAAAGCTACCAGCAACCACTG
AATGTCAGCTGTGAATGTGAATGTATCGCGAATTCAATGACTCACATGTA
TATGGTTGGTGACTCAAATTAAAAACTCAACtcgtgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060936-exon-scaffold_350-1491911889:43578..44506 | TCONS_00060936-exon-scaffold_350-1491911889:43578..44506 | Clytia hemisphaerica | exon |
| TCONS_00060936-exon-scaffold_350-1510915933:43578..44506 | TCONS_00060936-exon-scaffold_350-1510915933:43578..44506 | Clytia hemisphaerica | exon |
| TCONS_00060936-exon-scaffold_350-1575043694:43578..44506 | TCONS_00060936-exon-scaffold_350-1575043694:43578..44506 | Clytia hemisphaerica | exon |
| TCONS_00060936-exon-scaffold_350-1491911889:51924..52167 | TCONS_00060936-exon-scaffold_350-1491911889:51924..52167 | Clytia hemisphaerica | exon |
| TCONS_00060936-exon-scaffold_350-1510915933:51924..52167 | TCONS_00060936-exon-scaffold_350-1510915933:51924..52167 | Clytia hemisphaerica | exon |
| TCONS_00060936-exon-scaffold_350-1575043694:51924..52167 | TCONS_00060936-exon-scaffold_350-1575043694:51924..52167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:43578..52167 + |
Blast
The following BLAST results are available for this feature:
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