TCONS_00060913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060913
Unique NameTCONS_00060913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060913 ID=TCONS_00060913|Name=TCONS_00060913|organism=Clytia hemisphaerica|type=transcript|length=1185bp
gacatttaaaaaaatcgaaGCAATCTTTACTACAAACCAGCAAAAGTAca
tcaaaagaaacaaagacTTGAAAAGAAGATGACTTTATTGTATTTTTCTg
tgtaaaaaaatatcaacgAGTTTGACTCAACTGATAAATCAAAATATCTG
TCCCTAAATTGgttaaaaagtacaaaatgttTGGTTATAAATTAGCTAAT
NTCTATCCCTAAATTGGTTAAAAAGTACAAACTGTTTGGTTATAAattaa
ctaaaataaaaatctagATATATGATGAGTTGTATAAAGTTGTCTTAGTC
TCTATAACTTGATTGGTGTTTATTTTACttcaaatttcatgcttttaatT
CCTTTAAAGCCACAATCAATGATATCCCCACTCTTAACGGTTGATATACC
ACCAGGAGTACCAGTTAAAATAAGATCCCCTCTTTCCAATTTGGTAATTT
TACTGGTATAACTGATCAATTGGGAAATTGAGAAATTCAAATCTTTAGTG
TTGGCTGCTTGTCGGTCCTCACCATTCACAGTCAACCATAAATCAACATT
ATCTGGATCAGGAACTTCAGATTTGCTCAGAATTTCGCTGATTGGACAAA
AGGTATCAAAGCATTTGGCCAAAAGCCATGGTTTCTTTTCATCCAAAGCC
TCTTTGAAATGTGATGTTGAGGTCATATCCAAAGCAAGGACGTAACCTTC
AATATGATCCATTACTTGGTTTTCTGGGATTGACGAACCACCTTTTCCAA
TGACAACTCCAAGTTCTACTTCATGGTTGATTGTATCACATCCCTCTGGA
ATTCTAATAAATTCTCCTTGTGGTAGTAAACTTGTAGGGGCTTTCAGAAA
AATGACAGGATTTGGGGGTGGTGGGTTAGGCCCTTTAAATGCAAAAGCAG
CACCAACTATTTTACGACATGATGTAAACAAATCAACCTTTGATGCCATA
TTTGTATTATCTATATAGATTCAAAAACAAAGTCTAAAtcattttaaagt
atattttgaATGATATTTATACTCACTCTTCTATTTATATTAACAAAAGA
CAAAGACCTGAATATTCAAAACTCACTGAAATATGAAGATACCATTACAT
TGAAGAAATAGAACTTAAAGGAAATCTTTTTCATAGTTTAAACTCTTTCA
ATGATCTTCTTTCAAAATTGCAAACCAAGCTATCT
Run BLAST on NCBI

protein sequence of TCONS_00060913-protein

>TCONS_00060913-protein ID=TCONS_00060913-protein|Name=TCONS_00060913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MASKVDLFTSCRKIVGAAFAFKGPNPPPPNPVIFLKAPTSLLPQGEFIRI
PEGCDTINHEVELGVVIGKGGSSIPENQVMDHIEGYVLALDMTSTSHFKE
ALDEKKPWLLAKCFDTFCPISEILSKSEVPDPDNVDLWLTVNGEDRQAAN
TKDLNFSISQLISYTSKITKLERGDLILTGTPGGISTVKSGDIIDCGFKG
IKSMKFEVK
Run BLAST on NCBI

transcript from alignment at scaffold_349:776938..778122

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060913 ID=TCONS_00060913|Name=TCONS_00060913|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at scaffold_349:776938..778122 (Clytia hemisphaerica)
AGATAGCTTGGTTTGCAATTTTGAAAGAAGATCATTGAAAGAGTTTAAAC
TATGAAAAAGATTTCCTTTAAGTTCTATTTCTTCAATGTAATGGTATCTT
CATATTTCAGTGAGTTTTGAATATTCAGGTCTTTGTCTTTTGTTAATATA
AATAGAAGAGTGAGTATAAATATCATtcaaaatatactttaaaatgaTTT
AGACTTTGTTTTTGAATCTATATAGATAATACAAATATGGCATCAAAGGT
TGATTTGTTTACATCATGTCGTAAAATAGTTGGTGCTGCTTTTGCATTTA
AAGGGCCTAACCCACCACCCCCAAATCCTGTCATTTTTCTGAAAGCCCCT
ACAAGTTTACTACCACAAGGAGAATTTATTAGAATTCCAGAGGGATGTGA
TACAATCAACCATGAAGTAGAACTTGGAGTTGTCATTGGAAAAGGTGGTT
CGTCAATCCCAGAAAACCAAGTAATGGATCATATTGAAGGTTACGTCCTT
GCTTTGGATATGACCTCAACATCACATTTCAAAGAGGCTTTGGATGAAAA
GAAACCATGGCTTTTGGCCAAATGCTTTGATACCTTTTGTCCAATCAGCG
AAATTCTGAGCAAATCTGAAGTTCCTGATCCAGATAATGTTGATTTATGG
TTGACTGTGAATGGTGAGGACCGACAAGCAGCCAACACTAAAGATTTGAA
TTTCTCAATTTCCCAATTGATCAGTTATACCAGTAAAATTACCAAATTGG
AAAGAGGGGATCTTATTTTAACTGGTACTCCTGGTGGTATATCAACCGTT
AAGAGTGGGGATATCATTGATTGTGGCTTTAAAGGAattaaaagcatgaa
atttgaaGTAAAATAAACACCAATCAAGTTATAGAGACTAAGACAACTTT
ATACAACTCATCATATATctagatttttattttagttaatTTATAACCAA
ACAGTTTGTACTTTTTAACCAATTTAGGGATAGANATTAGCTAATTTATA
ACCAaacattttgtactttttaacCAATTTAGGGACAGATATTTTGATTT
ATCAGTTGAGTCAAACTcgttgatatttttttacacAGAAAAATACAATA
AAGTCATCTTCTTTTCAAgtctttgtttcttttgatgTACTTTTGCTGGT
TTGTAGTAAAGATTGCttcgatttttttaaatgtc

Coding sequence (CDS) from alignment at scaffold_349:776938..778122

>TCONS_00060913 ID=TCONS_00060913|Name=TCONS_00060913|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_349:776938..778122 (Clytia hemisphaerica)
ATGGCATCAAAGGTTGATTTGTTTACATCATGTCGTAAAATAGTTGGTGC
TGCTTTTGCATTTAAAGGGCCTAACCCACCACCCCCAAATCCTGTCATTT
TTCTGAAAGCCCCTACAAGTTTACTACCACAAGGAGAATTTATTAGAATT
CCAGAGGGATGTGATACAATCAACCATGAAGTAGAACTTGGAGTTGTCAT
TGGAAAAGGTGGTTCGTCAATCCCAGAAAACCAAGTAATGGATCATATTG
AAGGTTACGTCCTTGCTTTGGATATGACCTCAACATCACATTTCAAAGAG
GCTTTGGATGAAAAGAAACCATGGCTTTTGGCCAAATGCTTTGATACCTT
TTGTCCAATCAGCGAAATTCTGAGCAAATCTGAAGTTCCTGATCCAGATA
ATGTTGATTTATGGTTGACTGTGAATGGTGAGGACCGACAAGCAGCCAAC
ACTAAAGATTTGAATTTCTCAATTTCCCAATTGATCAGTTATACCAGTAA
AATTACCAAATTGGAAAGAGGGGATCTTATTTTAACTGGTACTCCTGGTG
GTATATCAACCGTTAAGAGTGGGGATATCATTGATTGTGGCTTTAAAGGA
attaaaagcatgaaatttgaaGTAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038243XLOC_038243Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060913-proteinTCONS_00060913-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060913-exon-scaffold_349-1491911889:776938..778122TCONS_00060913-exon-scaffold_349-1491911889:776938..778122Clytia hemisphaericaexon
TCONS_00060913-exon-scaffold_349-1510915933:776938..778122TCONS_00060913-exon-scaffold_349-1510915933:776938..778122Clytia hemisphaericaexon
TCONS_00060913-exon-scaffold_349-1575043694:776938..778122TCONS_00060913-exon-scaffold_349-1575043694:776938..778122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:776938..778122 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.976	113.856	173.067	174.675	225.591	182.526	132.444	147.093	99.2769	91.0611	72.8081	80.0591	30.8477	25.9599	66.7524	95.1375	73.923	53.9806	10.1626	13.1818	19.8923	20.8284	76.3548	66.3483	14.128	15.0819	32.7969	23.565	63.1009	44.6411
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011234Fumarylacetoacetase_C-rel
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00060913 vs. Swiss-Prot (Human)
Match: FAHD1 (Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.332e-49
Identity = 83/178 (46.63%), Postives = 110/178 (61.80%), Query Frame = -3 
Query:  323 VIFLKAPTSLLPQGEFIRIPEGCDTINHEVELGVVIGKGGSSIPENQVMDHIEGYVLALDMTSTSHFKEALDEKKPWLLAKCFDTFCPISEILSKSEVPDPDNVDLWLTVNGEDRQAANTKDLNFSISQLISYTSKITKLERGDLILTGTPGGISTVKSGDIIDCGFKGIKSMKFEVK 856
            V+FLK  T+  P+G  I +P     ++HE+ELGVV+GK   ++PE   MD++ GY L LDMT+     E   +  PW LAK F   CP+S  + K ++PDP  + LWL VNGE RQ   T  + FSI  +ISY SKI  LE GD+ILTGTP G+  VK  D I+ G  G+ SM F+V+
Sbjct:   43 VLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVE 220
The following BLAST results are available for this feature:
BLAST of TCONS_00060913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAHD16.332e-4946.63Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens ... [more]
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