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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060913 ID=TCONS_00060913|Name=TCONS_00060913|organism=Clytia hemisphaerica|type=transcript|length=1185bp gacatttaaaaaaatcgaaGCAATCTTTACTACAAACCAGCAAAAGTAca tcaaaagaaacaaagacTTGAAAAGAAGATGACTTTATTGTATTTTTCTg tgtaaaaaaatatcaacgAGTTTGACTCAACTGATAAATCAAAATATCTG TCCCTAAATTGgttaaaaagtacaaaatgttTGGTTATAAATTAGCTAAT NTCTATCCCTAAATTGGTTAAAAAGTACAAACTGTTTGGTTATAAattaa ctaaaataaaaatctagATATATGATGAGTTGTATAAAGTTGTCTTAGTC TCTATAACTTGATTGGTGTTTATTTTACttcaaatttcatgcttttaatT CCTTTAAAGCCACAATCAATGATATCCCCACTCTTAACGGTTGATATACC ACCAGGAGTACCAGTTAAAATAAGATCCCCTCTTTCCAATTTGGTAATTT TACTGGTATAACTGATCAATTGGGAAATTGAGAAATTCAAATCTTTAGTG TTGGCTGCTTGTCGGTCCTCACCATTCACAGTCAACCATAAATCAACATT ATCTGGATCAGGAACTTCAGATTTGCTCAGAATTTCGCTGATTGGACAAA AGGTATCAAAGCATTTGGCCAAAAGCCATGGTTTCTTTTCATCCAAAGCC TCTTTGAAATGTGATGTTGAGGTCATATCCAAAGCAAGGACGTAACCTTC AATATGATCCATTACTTGGTTTTCTGGGATTGACGAACCACCTTTTCCAA TGACAACTCCAAGTTCTACTTCATGGTTGATTGTATCACATCCCTCTGGA ATTCTAATAAATTCTCCTTGTGGTAGTAAACTTGTAGGGGCTTTCAGAAA AATGACAGGATTTGGGGGTGGTGGGTTAGGCCCTTTAAATGCAAAAGCAG CACCAACTATTTTACGACATGATGTAAACAAATCAACCTTTGATGCCATA TTTGTATTATCTATATAGATTCAAAAACAAAGTCTAAAtcattttaaagt atattttgaATGATATTTATACTCACTCTTCTATTTATATTAACAAAAGA CAAAGACCTGAATATTCAAAACTCACTGAAATATGAAGATACCATTACAT TGAAGAAATAGAACTTAAAGGAAATCTTTTTCATAGTTTAAACTCTTTCA ATGATCTTCTTTCAAAATTGCAAACCAAGCTATCT Run BLAST on NCBI protein sequence of TCONS_00060913-protein >TCONS_00060913-protein ID=TCONS_00060913-protein|Name=TCONS_00060913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MASKVDLFTSCRKIVGAAFAFKGPNPPPPNPVIFLKAPTSLLPQGEFIRI PEGCDTINHEVELGVVIGKGGSSIPENQVMDHIEGYVLALDMTSTSHFKE ALDEKKPWLLAKCFDTFCPISEILSKSEVPDPDNVDLWLTVNGEDRQAAN TKDLNFSISQLISYTSKITKLERGDLILTGTPGGISTVKSGDIIDCGFKG IKSMKFEVK Run BLAST on NCBI transcript from alignment at scaffold_349:776938..778122 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060913 ID=TCONS_00060913|Name=TCONS_00060913|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at scaffold_349:776938..778122 (Clytia hemisphaerica) AGATAGCTTGGTTTGCAATTTTGAAAGAAGATCATTGAAAGAGTTTAAAC
TATGAAAAAGATTTCCTTTAAGTTCTATTTCTTCAATGTAATGGTATCTT
CATATTTCAGTGAGTTTTGAATATTCAGGTCTTTGTCTTTTGTTAATATA
AATAGAAGAGTGAGTATAAATATCATtcaaaatatactttaaaatgaTTT
AGACTTTGTTTTTGAATCTATATAGATAATACAAATATGGCATCAAAGGT
TGATTTGTTTACATCATGTCGTAAAATAGTTGGTGCTGCTTTTGCATTTA
AAGGGCCTAACCCACCACCCCCAAATCCTGTCATTTTTCTGAAAGCCCCT
ACAAGTTTACTACCACAAGGAGAATTTATTAGAATTCCAGAGGGATGTGA
TACAATCAACCATGAAGTAGAACTTGGAGTTGTCATTGGAAAAGGTGGTT
CGTCAATCCCAGAAAACCAAGTAATGGATCATATTGAAGGTTACGTCCTT
GCTTTGGATATGACCTCAACATCACATTTCAAAGAGGCTTTGGATGAAAA
GAAACCATGGCTTTTGGCCAAATGCTTTGATACCTTTTGTCCAATCAGCG
AAATTCTGAGCAAATCTGAAGTTCCTGATCCAGATAATGTTGATTTATGG
TTGACTGTGAATGGTGAGGACCGACAAGCAGCCAACACTAAAGATTTGAA
TTTCTCAATTTCCCAATTGATCAGTTATACCAGTAAAATTACCAAATTGG
AAAGAGGGGATCTTATTTTAACTGGTACTCCTGGTGGTATATCAACCGTT
AAGAGTGGGGATATCATTGATTGTGGCTTTAAAGGAattaaaagcatgaa
atttgaaGTAAAATAAACACCAATCAAGTTATAGAGACTAAGACAACTTT
ATACAACTCATCATATATctagatttttattttagttaatTTATAACCAA
ACAGTTTGTACTTTTTAACCAATTTAGGGATAGANATTAGCTAATTTATA
ACCAaacattttgtactttttaacCAATTTAGGGACAGATATTTTGATTT
ATCAGTTGAGTCAAACTcgttgatatttttttacacAGAAAAATACAATA
AAGTCATCTTCTTTTCAAgtctttgtttcttttgatgTACTTTTGCTGGT
TTGTAGTAAAGATTGCttcgatttttttaaatgtc Coding sequence (CDS) from alignment at scaffold_349:776938..778122 >TCONS_00060913 ID=TCONS_00060913|Name=TCONS_00060913|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_349:776938..778122 (Clytia hemisphaerica) ATGGCATCAAAGGTTGATTTGTTTACATCATGTCGTAAAATAGTTGGTGC TGCTTTTGCATTTAAAGGGCCTAACCCACCACCCCCAAATCCTGTCATTT TTCTGAAAGCCCCTACAAGTTTACTACCACAAGGAGAATTTATTAGAATT CCAGAGGGATGTGATACAATCAACCATGAAGTAGAACTTGGAGTTGTCAT TGGAAAAGGTGGTTCGTCAATCCCAGAAAACCAAGTAATGGATCATATTG AAGGTTACGTCCTTGCTTTGGATATGACCTCAACATCACATTTCAAAGAG GCTTTGGATGAAAAGAAACCATGGCTTTTGGCCAAATGCTTTGATACCTT TTGTCCAATCAGCGAAATTCTGAGCAAATCTGAAGTTCCTGATCCAGATA ATGTTGATTTATGGTTGACTGTGAATGGTGAGGACCGACAAGCAGCCAAC ACTAAAGATTTGAATTTCTCAATTTCCCAATTGATCAGTTATACCAGTAA AATTACCAAATTGGAAAGAGGGGATCTTATTTTAACTGGTACTCCTGGTG GTATATCAACCGTTAAGAGTGGGGATATCATTGATTGTGGCTTTAAAGGA attaaaagcatgaaatttgaaGTAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060913-exon-scaffold_349-1491911889:776938..778122 | TCONS_00060913-exon-scaffold_349-1491911889:776938..778122 | Clytia hemisphaerica | exon |
TCONS_00060913-exon-scaffold_349-1510915933:776938..778122 | TCONS_00060913-exon-scaffold_349-1510915933:776938..778122 | Clytia hemisphaerica | exon |
TCONS_00060913-exon-scaffold_349-1575043694:776938..778122 | TCONS_00060913-exon-scaffold_349-1575043694:776938..778122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_349 | supercontig | scaffold_349:776938..778122 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR011234 | Fumarylacetoacetase_C-rel |
Vocabulary: Molecular Function
Term | Definition |
GO:0003824 | catalytic activity |
Vocabulary: Biological Process
Term | Definition |
GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0008152 |
metabolic process |
molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00060913 vs. Swiss-Prot (Human)
Match: FAHD1 (Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 6.332e-49 Identity = 83/178 (46.63%), Postives = 110/178 (61.80%), Query Frame = -3
Query: 323 VIFLKAPTSLLPQGEFIRIPEGCDTINHEVELGVVIGKGGSSIPENQVMDHIEGYVLALDMTSTSHFKEALDEKKPWLLAKCFDTFCPISEILSKSEVPDPDNVDLWLTVNGEDRQAANTKDLNFSISQLISYTSKITKLERGDLILTGTPGGISTVKSGDIIDCGFKGIKSMKFEVK 856
V+FLK T+ P+G I +P ++HE+ELGVV+GK ++PE MD++ GY L LDMT+ E + PW LAK F CP+S + K ++PDP + LWL VNGE RQ T + FSI +ISY SKI LE GD+ILTGTP G+ VK D I+ G G+ SM F+V+
Sbjct: 43 VLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVE 220
The following BLAST results are available for this feature:
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