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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060909 ID=TCONS_00060909|Name=TCONS_00060909|organism=Clytia hemisphaerica|type=transcript|length=2241bp
atcaaaaGTCCTGTTTTATCTCAAAATATCATCTTTCTAAGTCTCTAGCT
CGACGTAAGTTCTGTCCTTCAATCGCAGCTCGCCGGCGTATTCTGCTTCT
TACTGTTTGCTCATAGCCGCGCGCACTACCTGAACTCGAAGGCTTTAAAG
GATTATCAGCTGGGTCATCGTCGGTGGGTGTGTCGTCCGCAATTTCAAAT
GGGATGATCTTCTGCAAAGGTCGATGGATGGTGGAGGTACCATTCGTCGT
GTTGACTTTCAAACGTGCACCACGTATCTTTCCATCAGCTCCAATTACCA
AGCTTTCAACTTTTCCCATTCTCCATTGCGTCCTCGGTGTTGGTGTATCG
TCTCTGATAAGTACAACGTCATTCAATGTTAACTTAAGTTCGGAAGTTCT
GGTCTTATCATATGAATGTTTTTGTTTAAGTTCATTCAAATAGGTGCtct
tgaaacatttttgaaagtgTTTAACCAAATTCATAAGATGTCGGGCTCGT
CTGGTGCAATCGTCAGGTGTTGTTAAAGTATTAAAAACGTTAAAAGAAGG
GGTCGTATTGAGTTGCCGACCGTACATGAGATGATTAGGCGTGATCGTGT
TCCCAATCTCATCATCACTTGTGTAGCATAGTGGTCTTTGATTGATAGTG
GCCTCAATTTCGCTCAAGACCGTCTGTAGCTCTTCAAAGGTTAGAagggc
ctttttcaaaattttctttaatgCTGTCTTGACGGAGCGAACCAATCGTT
CATAAAAACCTCCCCACCATGGAGAGGCAGGCAGAATAAATCGTTGCCGA
ACATTCAATCGAGTCATCAAATGTTTGACTTCTTTCGATTTGAAGGTCTT
GGCGTTGTCGTTTATGATTTCATCAGGTGTACCACGACGTGAAGCAAAGC
GTTGGAATCCCCGTATGAACGCAGGAGATTTCATGTCAGGAGTGAGTTCA
AGATGGATTGCACGACTACTAGCGCAAGTAAAAAGCAAAATGTATACCTT
TGAGCTTGGAAGTCCTTTATTCTTTACAAAGAGGGGTCCAGCAAAGTCAA
GTCCAGTCGACGAAAACGGGTGGTTGTTATAGTTCACTCGAAATTCTGGC
AGTTCAGGAGATTCCGGTGGTTTCATCGTTCTCCCTTGAAACCGTTTACA
ACTAACACATTTGCGAAGCACATTCTTGACAGCTTTTCTTCCACGAATTA
TCCAATatctttcgcgaattttggcaaGTGTGGTTTCAATACCAAAATGC
AAACACTTCTCATGCGTATCTTTGATGAGCAATTTCGTGAAGTCGGTTGA
TTCAGGCAGCAGTAAGGGATTCTTCTTTGTTGGTAGCGAAGACTCGTTGA
ATCGACTCTTGACACGGTGGTATCCTTCGTCATCTTTGTATACGTTCAAG
TTTGATTTCGTCTTCTCAAAGTTTGGTTGGTTCGTCATTCGTTCTTGTTC
ATCGCGTAGAATCATGGAAAGTGCGTTGGTAGTTTCTTCTGCGGTCAGTT
CTGTTAGCACTTTATCGTGTTTGTACTTCTTCgccaaaaagttgtttttg
aaaCGAAGAACGAAAGCTACAACAGTTACAAGCTTACGTAAGGATCCATG
ACGAGAGAAATCGATCACATCACTCAGACTAACTTTCTTATCTGAAGTCA
CAGTCATAACGTTAACGTCAGTTCGTCTAAGTTCTACTTGTGCGTCAATT
GGTATTTCGGTTTTATTGTCACGTCTTTTGTCATAGTCAATGTCAAGATT
AGAAAGAAAGGAAGGACCAGAAAGCCACTTGTCTTGAAAAAGAGCAGAGA
AATCCTCAACAGGTCTAGTAGGAGCATCGGCAGGATTTTCAGTACCAGCA
ACATGAAACCAAGACTCCCTAGAAACAACCTTTCTTATCTTAACAACCCT
GTTTTCCACCCAAGCTTTCCAAGTCTTCTCTTTACCTCTAATCCAACAAA
GCGAAACAGTTGAATCCGACCAACAGACAATACGATTAATCTTCAGTCGT
TCACACAACGCCACATCAACATTCGATATCAATTTCGTAAGAAGCAAACA
AGCCAACAATTCAAGTCTAGGAATAGAAGTCTTCTTTAAAGGAGCGACTT
TCGTCTTAGAAGTCCAAAAGAAAGCTTTAGCATGAGATCTAGTGATAACT
CTTAAATAAACAACACCACAGTACAAAATCAACGAGCTATCACTAAATCC
ATGCAATTCAACAGACACAATTTCATTCCTATCGACCAAAG Run BLAST on NCBI protein sequence of Thioredoxin domain containing protein >TCONS_00060909-protein ID=TCONS_00060909-protein|Name=Thioredoxin domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp
LVDRNEIVSVELHGFSDSSLILYCGVVYLRVITRSHAKAFFWTSKTKVAP
LKKTSIPRLELLACLLLTKLISNVDVALCERLKINRIVCWSDSTVSLCWI
RGKEKTWKAWVENRVVKIRKVVSRESWFHVAGTENPADAPTRPVEDFSAL
FQDKWLSGPSFLSNLDIDYDKRRDNKTEIPIDAQVELRRTDVNVMTVTSD
KKVSLSDVIDFSRHGSLRKLVTVVAFVLRFKNNFLAKKYKHDKVLTELTA
EETTNALSMILRDEQERMTNQPNFEKTKSNLNVYKDDEGYHRVKSRFNES
SLPTKKNPLLLPESTDFTKLLIKDTHEKCLHFGIETTLAKIRERYWIIRG
RKAVKNVLRKCVSCKRFQGRTMKPPESPELPEFRVNYNNHPFSSTGLDFA
GPLFVKNKGLPSSKVYILLFTCASSRAIHLELTPDMKSPAFIRGFQRFAS
RRGTPDEIINDNAKTFKSKEVKHLMTRLNVRQRFILPASPWWGGFYERLV
RSVKTALKKILKKALLTFEELQTVLSEIEATINQRPLCYTSDDEIGNTIT
PNHLMYGRQLNTTPSFNVFNTLTTPDDCTRRARHLMNLVKHFQKCFKSTY
LNELKQKHSYDKTRTSELKLTLNDVVLIRDDTPTPRTQWRMGKVESLVIG
ADGKIRGARLKVNTTNGTSTIHRPLQKIIPFEIADDTPTDDDPADNPLKP
SSSGSARGYEQTVRSRIRRRAAIEGQNLRRARDLER Run BLAST on NCBI transcript from alignment at scaffold_349:711073..713313 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060909 ID=TCONS_00060909|Name=TCONS_00060909|organism=Clytia hemisphaerica|type=transcript|length=2241bp|location=Sequence derived from alignment at scaffold_349:711073..713313 (Clytia hemisphaerica)
CTTTGGTCGATAGGAATGAAATTGTGTCTGTTGAATTGCATGGATTTAGT
GATAGCTCGTTGATTTTGTACTGTGGTGTTGTTTATTTAAGAGTTATCAC
TAGATCTCATGCTAAAGCTTTCTTTTGGACTTCTAAGACGAAAGTCGCTC
CTTTAAAGAAGACTTCTATTCCTAGACTTGAATTGTTGGCTTGTTTGCTT
CTTACGAAATTGATATCGAATGTTGATGTGGCGTTGTGTGAACGACTGAA
GATTAATCGTATTGTCTGTTGGTCGGATTCAACTGTTTCGCTTTGTTGGA
TTAGAGGTAAAGAGAAGACTTGGAAAGCTTGGGTGGAAAACAGGGTTGTT
AAGATAAGAAAGGTTGTTTCTAGGGAGTCTTGGTTTCATGTTGCTGGTAC
TGAAAATCCTGCCGATGCTCCTACTAGACCTGTTGAGGATTTCTCTGCTC
TTTTTCAAGACAAGTGGCTTTCTGGTCCTTCCTTTCTTTCTAATCTTGAC
ATTGACTATGACAAAAGACGTGACAATAAAACCGAAATACCAATTGACGC
ACAAGTAGAACTTAGACGAACTGACGTTAACGTTATGACTGTGACTTCAG
ATAAGAAAGTTAGTCTGAGTGATGTGATCGATTTCTCTCGTCATGGATCC
TTACGTAAGCTTGTAACTGTTGTAGCTTTCGTTCTTCGtttcaaaaacaa
ctttttggcGAAGAAGTACAAACACGATAAAGTGCTAACAGAACTGACCG
CAGAAGAAACTACCAACGCACTTTCCATGATTCTACGCGATGAACAAGAA
CGAATGACGAACCAACCAAACTTTGAGAAGACGAAATCAAACTTGAACGT
ATACAAAGATGACGAAGGATACCACCGTGTCAAGAGTCGATTCAACGAGT
CTTCGCTACCAACAAAGAAGAATCCCTTACTGCTGCCTGAATCAACCGAC
TTCACGAAATTGCTCATCAAAGATACGCATGAGAAGTGTTTGCATTTTGG
TATTGAAACCACACttgccaaaattcgcgaaagatATTGGATAATTCGTG
GAAGAAAAGCTGTCAAGAATGTGCTTCGCAAATGTGTTAGTTGTAAACGG
TTTCAAGGGAGAACGATGAAACCACCGGAATCTCCTGAACTGCCAGAATT
TCGAGTGAACTATAACAACCACCCGTTTTCGTCGACTGGACTTGACTTTG
CTGGACCCCTCTTTGTAAAGAATAAAGGACTTCCAAGCTCAAAGGTATAC
ATTTTGCTTTTTACTTGCGCTAGTAGTCGTGCAATCCATCTTGAACTCAC
TCCTGACATGAAATCTCCTGCGTTCATACGGGGATTCCAACGCTTTGCTT
CACGTCGTGGTACACCTGATGAAATCATAAACGACAACGCCAAGACCTTC
AAATCGAAAGAAGTCAAACATTTGATGACTCGATTGAATGTTCGGCAACG
ATTTATTCTGCCTGCCTCTCCATGGTGGGGAGGTTTTTATGAACGATTGG
TTCGCTCCGTCAAGACAGcattaaagaaaattttgaaaaaggccctTCTA
ACCTTTGAAGAGCTACAGACGGTCTTGAGCGAAATTGAGGCCACTATCAA
TCAAAGACCACTATGCTACACAAGTGATGATGAGATTGGGAACACGATCA
CGCCTAATCATCTCATGTACGGTCGGCAACTCAATACGACCCCTTCTTTT
AACGTTTTTAATACTTTAACAACACCTGACGATTGCACCAGACGAGCCCG
ACATCTTATGAATTTGGTTAAAcactttcaaaaatgtttcaagaGCACCT
ATTTGAATGAACTTAAACAAAAACATTCATATGATAAGACCAGAACTTCC
GAACTTAAGTTAACATTGAATGACGTTGTACTTATCAGAGACGATACACC
AACACCGAGGACGCAATGGAGAATGGGAAAAGTTGAAAGCTTGGTAATTG
GAGCTGATGGAAAGATACGTGGTGCACGTTTGAAAGTCAACACGACGAAT
GGTACCTCCACCATCCATCGACCTTTGCAGAAGATCATCCCATTTGAAAT
TGCGGACGACACACCCACCGACGATGACCCAGCTGATAATCCTTTAAAGC
CTTCGAGTTCAGGTAGTGCGCGCGGCTATGAGCAAACAGTAAGAAGCAGA
ATACGCCGGCGAGCTGCGATTGAAGGACAGAACTTACGTCGAGCTAGAGA
CTTAGAAAGATGATATTTTGAGATAAAACAGGACttttgat Coding sequence (CDS) from alignment at scaffold_349:711073..713313 >TCONS_00060909 ID=TCONS_00060909|Name=TCONS_00060909|organism=Clytia hemisphaerica|type=CDS|length=2211bp|location=Sequence derived from alignment at scaffold_349:711073..713313 (Clytia hemisphaerica)
TTGGTCGATAGGAATGAAATTGTGTCTGTTGAATTGCATGGATTTAGTGA
TAGCTCGTTGATTTTGTACTGTGGTGTTGTTTATTTAAGAGTTATCACTA
GATCTCATGCTAAAGCTTTCTTTTGGACTTCTAAGACGAAAGTCGCTCCT
TTAAAGAAGACTTCTATTCCTAGACTTGAATTGTTGGCTTGTTTGCTTCT
TACGAAATTGATATCGAATGTTGATGTGGCGTTGTGTGAACGACTGAAGA
TTAATCGTATTGTCTGTTGGTCGGATTCAACTGTTTCGCTTTGTTGGATT
AGAGGTAAAGAGAAGACTTGGAAAGCTTGGGTGGAAAACAGGGTTGTTAA
GATAAGAAAGGTTGTTTCTAGGGAGTCTTGGTTTCATGTTGCTGGTACTG
AAAATCCTGCCGATGCTCCTACTAGACCTGTTGAGGATTTCTCTGCTCTT
TTTCAAGACAAGTGGCTTTCTGGTCCTTCCTTTCTTTCTAATCTTGACAT
TGACTATGACAAAAGACGTGACAATAAAACCGAAATACCAATTGACGCAC
AAGTAGAACTTAGACGAACTGACGTTAACGTTATGACTGTGACTTCAGAT
AAGAAAGTTAGTCTGAGTGATGTGATCGATTTCTCTCGTCATGGATCCTT
ACGTAAGCTTGTAACTGTTGTAGCTTTCGTTCTTCGtttcaaaaacaact
ttttggcGAAGAAGTACAAACACGATAAAGTGCTAACAGAACTGACCGCA
GAAGAAACTACCAACGCACTTTCCATGATTCTACGCGATGAACAAGAACG
AATGACGAACCAACCAAACTTTGAGAAGACGAAATCAAACTTGAACGTAT
ACAAAGATGACGAAGGATACCACCGTGTCAAGAGTCGATTCAACGAGTCT
TCGCTACCAACAAAGAAGAATCCCTTACTGCTGCCTGAATCAACCGACTT
CACGAAATTGCTCATCAAAGATACGCATGAGAAGTGTTTGCATTTTGGTA
TTGAAACCACACttgccaaaattcgcgaaagatATTGGATAATTCGTGGA
AGAAAAGCTGTCAAGAATGTGCTTCGCAAATGTGTTAGTTGTAAACGGTT
TCAAGGGAGAACGATGAAACCACCGGAATCTCCTGAACTGCCAGAATTTC
GAGTGAACTATAACAACCACCCGTTTTCGTCGACTGGACTTGACTTTGCT
GGACCCCTCTTTGTAAAGAATAAAGGACTTCCAAGCTCAAAGGTATACAT
TTTGCTTTTTACTTGCGCTAGTAGTCGTGCAATCCATCTTGAACTCACTC
CTGACATGAAATCTCCTGCGTTCATACGGGGATTCCAACGCTTTGCTTCA
CGTCGTGGTACACCTGATGAAATCATAAACGACAACGCCAAGACCTTCAA
ATCGAAAGAAGTCAAACATTTGATGACTCGATTGAATGTTCGGCAACGAT
TTATTCTGCCTGCCTCTCCATGGTGGGGAGGTTTTTATGAACGATTGGTT
CGCTCCGTCAAGACAGcattaaagaaaattttgaaaaaggccctTCTAAC
CTTTGAAGAGCTACAGACGGTCTTGAGCGAAATTGAGGCCACTATCAATC
AAAGACCACTATGCTACACAAGTGATGATGAGATTGGGAACACGATCACG
CCTAATCATCTCATGTACGGTCGGCAACTCAATACGACCCCTTCTTTTAA
CGTTTTTAATACTTTAACAACACCTGACGATTGCACCAGACGAGCCCGAC
ATCTTATGAATTTGGTTAAAcactttcaaaaatgtttcaagaGCACCTAT
TTGAATGAACTTAAACAAAAACATTCATATGATAAGACCAGAACTTCCGA
ACTTAAGTTAACATTGAATGACGTTGTACTTATCAGAGACGATACACCAA
CACCGAGGACGCAATGGAGAATGGGAAAAGTTGAAAGCTTGGTAATTGGA
GCTGATGGAAAGATACGTGGTGCACGTTTGAAAGTCAACACGACGAATGG
TACCTCCACCATCCATCGACCTTTGCAGAAGATCATCCCATTTGAAATTG
CGGACGACACACCCACCGACGATGACCCAGCTGATAATCCTTTAAAGCCT
TCGAGTTCAGGTAGTGCGCGCGGCTATGAGCAAACAGTAAGAAGCAGAAT
ACGCCGGCGAGCTGCGATTGAAGGACAGAACTTACGTCGAGCTAGAGACT
TAGAAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060909-exon-scaffold_349-1491911889:711073..713313 | TCONS_00060909-exon-scaffold_349-1491911889:711073..713313 | Clytia hemisphaerica | exon |
| TCONS_00060909-exon-scaffold_349-1510915933:711073..713313 | TCONS_00060909-exon-scaffold_349-1510915933:711073..713313 | Clytia hemisphaerica | exon |
| TCONS_00060909-exon-scaffold_349-1575043694:711073..713313 | TCONS_00060909-exon-scaffold_349-1575043694:711073..713313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:711073..713313 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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