TCONS_00060906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060906
Unique NameTCONS_00060906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060906 ID=TCONS_00060906|Name=TCONS_00060906|organism=Clytia hemisphaerica|type=transcript|length=506bp
TTTTTTACTACTACGTACATTATCTTGTCTTTGTATTCTTTCATTCCACT
CAACTGTTTGGCTTTTTGCTGCAGCAAGAAAGACTTACCACAGCCCCAGC
CCCCGTAGAACAGCATTTTATTGAAACGAGAATCGTTTGCTCTCATGATG
GGGAGTTGTTTCTTACTGTAGAATAAAATGTTGTCGGTTGTACATACGGT
ATCAATGGCTTCGGTGATGTAATCCACCCAATTTGTTGTTGTGATGGGTG
CCGTCTTTGAAGAGTGGAGAGCGAAAATGACGATTCGTAAAACATCCTTA
AGTTGGTTGACTGGGGGAATATAGGGGATGAAGGTTGGTACAATAGGGTA
TTTTGTGAAGATGTTTGCAAGCCAGCCTTTTAAATCAGTGTCCAGATTGA
TGAAATGTTGAGTTCCATAAAGTTCAGTATCGTTCTCAACGCAAACAGCA
GGATAAAAGGTCCAACCTGATCCGAGTTGATCACTCAACCTTTCTTCAAT
CAACTT
Run BLAST on NCBI

protein sequence of TCONS_00060906-protein

>TCONS_00060906-protein ID=TCONS_00060906-protein|Name=TCONS_00060906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
KLIEERLSDQLGSGWTFYPAVCVENDTELYGTQHFINLDTDLKGWLANIF
TKYPIVPTFIPYIPPVNQLKDVLRIVIFALHSSKTAPITTTNWVDYITEA
IDTVCTTDNILFYSKKQLPIMRANDSRFNKMLFYGGWGCGKSFLLQQKAK
QLSGMKEYKDKIMYVVVK
Run BLAST on NCBI

transcript from alignment at scaffold_349:528150..528655

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060906 ID=TCONS_00060906|Name=TCONS_00060906|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_349:528150..528655 (Clytia hemisphaerica)
AAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGACCTT
TTATCCTGCTGTTTGCGTTGAGAACGATACTGAACTTTATGGAACTCAAC
ATTTCATCAATCTGGACACTGATTTAAAAGGCTGGCTTGCAAACATCTTC
ACAAAATACCCTATTGTACCAACCTTCATCCCCTATATTCCCCCAGTCAA
CCAACTTAAGGATGTTTTACGAATCGTCATTTTCGCTCTCCACTCTTCAA
AGACGGCACCCATCACAACAACAAATTGGGTGGATTACATCACCGAAGCC
ATTGATACCGTATGTACAACCGACAACATTTTATTCTACAGTAAGAAACA
ACTCCCCATCATGAGAGCAAACGATTCTCGTTTCAATAAAATGCTGTTCT
ACGGGGGCTGGGGCTGTGGTAAGTCTTTCTTGCTGCAGCAAAAAGCCAAA
CAGTTGAGTGGAATGAAAGAATACAAAGACAAGATAATGTACGTAGTAGT
AAAAAA

Coding sequence (CDS) from alignment at scaffold_349:528150..528655

>TCONS_00060906 ID=TCONS_00060906|Name=TCONS_00060906|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_349:528150..528655 (Clytia hemisphaerica)
AAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGACCTT
TTATCCTGCTGTTTGCGTTGAGAACGATACTGAACTTTATGGAACTCAAC
ATTTCATCAATCTGGACACTGATTTAAAAGGCTGGCTTGCAAACATCTTC
ACAAAATACCCTATTGTACCAACCTTCATCCCCTATATTCCCCCAGTCAA
CCAACTTAAGGATGTTTTACGAATCGTCATTTTCGCTCTCCACTCTTCAA
AGACGGCACCCATCACAACAACAAATTGGGTGGATTACATCACCGAAGCC
ATTGATACCGTATGTACAACCGACAACATTTTATTCTACAGTAAGAAACA
ACTCCCCATCATGAGAGCAAACGATTCTCGTTTCAATAAAATGCTGTTCT
ACGGGGGCTGGGGCTGTGGTAAGTCTTTCTTGCTGCAGCAAAAAGCCAAA
CAGTTGAGTGGAATGAAAGAATACAAAGACAAGATAATGTACGTAGTAGT
AAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038236XLOC_038236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060906-exon-scaffold_349-1491911889:528150..528655TCONS_00060906-exon-scaffold_349-1491911889:528150..528655Clytia hemisphaericaexon
TCONS_00060906-exon-scaffold_349-1510915933:528150..528655TCONS_00060906-exon-scaffold_349-1510915933:528150..528655Clytia hemisphaericaexon
TCONS_00060906-exon-scaffold_349-1575043694:528150..528655TCONS_00060906-exon-scaffold_349-1575043694:528150..528655Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060906-proteinTCONS_00060906-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:528150..528655 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.129441	0	0.67672	0	0.168279	1.04688	0.416585	0.225153	0.569988	1.04053	0.247433	1.46239	2.37228	1.74219	2.96319	1.11117	2.08842	0.758976	0.899086	2.25613	1.64536	1.18362	0.888282	1.98765	1.19367	8.39267	6.53975	1.14583	0.886304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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