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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060902 ID=TCONS_00060902|Name=TCONS_00060902|organism=Clytia hemisphaerica|type=transcript|length=2328bp
gggcgggtgatgcgaatagaacaatttttcgatgacggcCTAATGATAAT
TGTAAATACTATtcactgatgatccgcggctAGAACCGCTTTGCGTCTTT
TCGCTTGAGAATATGATTGAcagatgaaattttttcaccCGCGCGGGAGC
TGGCGGACGTTCtgcgagcgttctcggctcaatccctTGGACTGCAAGCT
AAAAAAAGGTAGACATAGCTGTGGCAGATTATTTAGaaggaagttgttgg
aatgtttacaaggctcttgacagaatatcGTTTGTTggattgtcaatgat
gacagtgaccaattgatgtttgtaagtgcactttaaaGTTTTGGTTCCCA
TTGAAAaaccatattctggttttcatgttattagatgctgttttagagct
ttagagctagcctggttggcttgaaatcgaaaatgaaaccactgaaaaca
aaaataaacttgGCCCGCACTCCAAATCTTGATATAGGAGCTTAAGTCTA
TACTTTCTGTTTTATAAATGCTTAAAATCAGAAGGGTTCTATCTAATAAC
GACTCTGGGTAACACCCGCACGCACACGCCCGCACATTTGCGGGCGTTTG
CGGGCGATATTTTGACTTAGGATTTATAACGTCGCCCGAACGCGCCCAGT
CACGCGTGCGCAAAAGGGTGCAAAATAAACTCGCCGTGAGAAATAAATTA
CAGACTCAAAACAAAGTTCTTTCATGTGATTTTTAATGTCTATCATGTTT
GAAATAagacaaaacacaaaataaaaaagatttccagagtataaaaaaac
attttcaggaACTCTAAACATAAATTTAATAATGcagtttaaaatgtttt
tggtcagtaaaatgttcACGATATTGTTTACTTTAAACTCGGGCGACAGT
TCATGCTTGTTGCACTCAAATCGCTACAGCTGTTCCAGATGGACTTTGAG
TTATAAATTATGCATACTTATGGCTCTAGAACCCTTTTGTTATCGTGTAT
ATATACTTTTTgaatcgaaaaaatcaaaaattaagggAACAGAGACGAGG
AACGTAAATCTCTCGCCTGCACACGCCCGCAAATGTGTGGGAATGTGCGG
GCGTTACCCAGGGTCGTATctaatattttccaaaattttctgtGTTGGAC
CCAACGATGGTGGGTCCTCCCAGTTAAAAAAATACACAACAACCAACTTC
AAAAGACCTTGAATTgctcaactttcaaaaaagaattgcCTGCAACGTGA
AAGTGTTGGTGGTCAGGGAAAAGTCACTCTTTTtagcatttttgtcaaga
agaAATACCCCTTTTTAGTAAAGAGTCGGGGAAAATATTATTGGTAATAA
TTAGTGTGGGAACCCTGCATAGCTTCTTTCGTGGGACGCAGCAGGGAAAA
ACCATATTTGAGCCAAATCATTGTCCATACTAAGGTGGAAGTGAAAGCat
gaatgtttgggaaatcaaaaggACAACTTTTGTAAGGATGTTGAGTTTTT
TGTTTATTAACATTTGTGACTGACTGTTAAGCAACCTTGggtcacacttt
cttatacCTAACATCTTTCTTCCTCAAATTAACTCAAATTAATGACCACT
CCATGACACTTATTGacaatttttcttcaatttctgaaAAGCCTACTTTT
TCAACCAACCTGACCTTTTTCAGATGGCCCACTATGCCTTTAGTTAGGAC
TACAGGTGCTCTCCAATTCTCCAATTGGTATTGTCCATTTTGGAGGAAAA
CTAAAATATTTGAGCTCAAAACAAATTTATTCTTTTCATGAAAATGCTGT
ATCTGGTCACCATCAGTATCATAATTAATTGTAAGTTGCTTTCAGATACA
TTGCAGTACCTTGAATTGCAGTACCGTTTAAAGATACGGGTTGTAGGCTT
TTTTGTAGGCCTGGTCGAATCTTGGAAAATTCATGTCTTGATTGTTCAGA
TCAAGTTTACTACTCTTTGATAATCTATTTTGAAATGCGAGAGACAAAAT
CCAAACAATAACCCAGTTTTTGACTTGATAACTCAAACTTTGCTTATATT
TgtcttttgtttcattttcctttgTAGGTTTTAATCTTTTGTATAGAGTT
ATTTGTTTAAATCGTTGAGtgaatcttttgttttgaaatatgtgctttaa
tctcatggttgattgaaattcgattgacgttttagCTTAcgataatttgt
aatttcccgcgaacttgtaatttcccttctagcttttgtaatttccctcc
tagattttgtaatttcccgtgaaagtgaaatttccatcgtttggaaattc
atcacctttttcaaatttcttactaact Run BLAST on NCBI transcript from alignment at scaffold_349:222792..225119 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060902 ID=TCONS_00060902|Name=TCONS_00060902|organism=Clytia hemisphaerica|type=transcript|length=2328bp|location=Sequence derived from alignment at scaffold_349:222792..225119 (Clytia hemisphaerica)
agttagtaagaaatttgaaaaaggtgatgaatttccaaacgatggaaatt
tcactttcacgggaaattacaaaatctaggagggaaattacaaaagctag
aagggaaattacaagttcgcgggaaattacaaattatcgTAAGctaaaac
gtcaatcgaatttcaatcaaccatgagattaaagcacatatttcaaaaca
aaagattcaCTCAACGATTTAAACAAATAACTCTATACAAAAGATTAAAA
CCTAcaaaggaaaatgaaacaaaagacAAATATAAGCAAAGTTTGAGTTA
TCAAGTCAAAAACTGGGTTATTGTTTGGATTTTGTCTCTCGCATTTCAAA
ATAGATTATCAAAGAGTAGTAAACTTGATCTGAACAATCAAGACATGAAT
TTTCCAAGATTCGACCAGGCCTACAAAAAAGCCTACAACCCGTATCTTTA
AACGGTACTGCAATTCAAGGTACTGCAATGTATCTGAAAGCAACTTACAA
TTAATTATGATACTGATGGTGACCAGATACAGCATTTTCATGAAAAGAAT
AAATTTGTTTTGAGCTCAAATATTTTAGTTTTCCTCCAAAATGGACAATA
CCAATTGGAGAATTGGAGAGCACCTGTAGTCCTAACTAAAGGCATAGTGG
GCCATCTGAAAAAGGTCAGGTTGGTTGAAAAAGTAGGCTTttcagaaatt
gaagaaaaattgtCAATAAGTGTCATGGAGTGGTCATTAATTTGAGTTAA
TTTGAGGAAGAAAGATGTTAGgtataagaaagtgtgaccCAAGGTTGCTT
AACAGTCAGTCACAAATGTTAATAAACAAAAAACTCAACATCCTTACAAA
AGTTGTccttttgatttcccaaacattcatGCTTTCACTTCCACCTTAGT
ATGGACAATGATTTGGCTCAAATATGGTTTTTCCCTGCTGCGTCCCACGA
AAGAAGCTATGCAGGGTTCCCACACTAATTATTACCAATAATATTTTCCC
CGACTCTTTACTAAAAAGGGGTATTtcttcttgacaaaaatgctaAAAAG
AGTGACTTTTCCCTGACCACCAACACTTTCACGTTGCAGgcaattctttt
ttgaaagttgagcAATTCAAGGTCTTTTGAAGTTGGTTGTTGTGTATTTT
TTTAACTGGGAGGACCCACCATCGTTGGGTCCAACacagaaaattttgga
aaatattagATACGACCCTGGGTAACGCCCGCACATTCCCACACATTTGC
GGGCGTGTGCAGGCGAGAGATTTACGTTCCTCGTCTCTGTTcccttaatt
tttgattttttcgattcAAAAAGTATATATACACGATAACAAAAGGGTTC
TAGAGCCATAAGTATGCATAATTTATAACTCAAAGTCCATCTGGAACAGC
TGTAGCGATTTGAGTGCAACAAGCATGAACTGTCGCCCGAGTTTAAAGTA
AACAATATCGTgaacattttactgaccaaaaacattttaaactgCATTAT
TAAATTTATGTTTAGAGTtcctgaaaatgtttttttatactctggaaatc
ttttttattttgtgttttgtctTATTTCAAACATGATAGACATTAAAAAT
CACATGAAAGAACTTTGTTTTGAGTCTGTAATTTATTTCTCACGGCGAGT
TTATTTTGCACCCTTTTGCGCACGCGTGACTGGGCGCGTTCGGGCGACGT
TATAAATCCTAAGTCAAAATATCGCCCGCAAACGCCCGCAAATGTGCGGG
CGTGTGCGTGCGGGTGTTACCCAGAGTCGTTATTAGATAGAACCCTTCTG
ATTTTAAGCATTTATAAAACAGAAAGTATAGACTTAAGCTCCTATATCAA
GATTTGGAGTGCGGGCcaagtttatttttgttttcagtggtttcattttc
gatttcaagccaaccaggctagctctaaagctctaaaacagcatctaata
acatgaaaaccagaatatggttTTTCAATGGGAACCAAAACtttaaagtg
cacttacaaacatcaattggtcactgtcatcattgacaatccAACAAACg
atattctgtcaagagccttgtaaacattccaacaacttccttCTAAATAA
TCTGCCACAGCTATGTCTACCTTTTTTTAGCTTGCAGTCCAagggattga
gccgagaacgctcgcaGAACGTCCGCCAGCTCCCGCGCGggtgaaaaaat
ttcatctgTCAATCATATTCTCAAGCGAAAAGACGCAAAGCGGTTCTagc
cgcggatcatcagtgaATAGTATTTACAATTATCATTAGgccgtcatcga
aaaattgttctattcgcatcacccgccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060902-exon-scaffold_349-1491911889:222792..225119 | TCONS_00060902-exon-scaffold_349-1491911889:222792..225119 | Clytia hemisphaerica | exon |
| TCONS_00060902-exon-scaffold_349-1510915933:222792..225119 | TCONS_00060902-exon-scaffold_349-1510915933:222792..225119 | Clytia hemisphaerica | exon |
| TCONS_00060902-exon-scaffold_349-1575043694:222792..225119 | TCONS_00060902-exon-scaffold_349-1575043694:222792..225119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:222792..225119 . |
Blast
The following BLAST results are available for this feature:
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