TCONS_00060901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060901
Unique NameTCONS_00060901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060901 ID=TCONS_00060901|Name=TCONS_00060901|organism=Clytia hemisphaerica|type=transcript|length=1475bp
AAGATAAGTTCTCAACTGCTCTTTTACTTTACCCTACTTTAGTGTCTTAG
TGGTTGACTTTGTCGTTTATTTGTTTTCAGTATTCAATGATAGACACTGC
TAAGGTGTTTATGCTATAGTGTCTGATTAAATGCTCTCTGGGACTCTGGT
TATATTCAAGGGCTATGTTCGTGTAACACTTCCTCAAATTCGGTATTCCT
TTATGAGCGCAGGCACACCATGGCCTCTGCTATTGGCTAGTTATATTATG
TCTGTAAAGAAATAATGGATGATTAATAGAAATGGAATTGATTTCTCCGT
TGGTCCATGCAttaaagtatcacttgttttatttTAACCTAAAGTTGATT
CAGTATCAGAAGCCATGTACAAAAATGTGAAATTGATAACCTTTGATGCC
ATGAATACTTTGTTTACTACCAAATTACCACCTGGGATGTCTTATTATCA
TGCAGCAAAGAAAATGTACCCTCACTTAAAAGAAGAAACTGAAGAAATAT
CATTATGTGTTACCAATAACTTCAAAGAAGTCTATAAGATTTATTATGGA
GAATATACTTTAAATGGTCAGTCTAAAGAAACATGTAAAACGTTTTGGGA
AGGTGTTATTGGCAAAACACTTTATAAAAGTGGTGTCGATTTaactgaaa
ttgaaatgaaaaacgTAACAGATCAACTATATGGAGAGTATTCAACATCA
AAATATTGGAAACCATTCAATGAAACTCATAAAGTCCTTGATAAATTACA
TGCTAAGGGTATGAGGCTTGGCATTGTATCAAACTTTGATGAAAGGCTTG
AAAATGTACTCAAAAGTCTTGATTTAATGAAATATATGGAGTTTGTTATT
TTTCCACCAGTAACTAAAGGCCTTGGTAAGCCAAATCCAAGGGTTTTTCA
ACAGTTATTAAAGGAGTATGCTAATTGTCAACCAGAAGAAATAGTTCATA
TTGGTGATgataaagaaaatgattttataGCTGCAAAAAAAGCTGGAATA
AAACCTTTGCTGCTAGATAAATTCAACACCCAATCCGACCCCAACTATAT
TACAATGACCTCACtgaatgatatttttaaatttgtagagtttgattttt
aaaataatttatataccCACAGATTTTAATAACTAATGCCTGCTATATTT
AGTTGAATTAAACAGATCAGAGTATAATACAATTTggagaaatttgaaga
atttgaaTGATCaactaccgggtgcaccaaaaaaagtatacaggtttgtc
gagatattgcaGGCTTtggtatattttttgttcattctttttttatcgta
tagaggataCTTTTTTGGTGCACCGGGTAGACAAAAATGTATTGAATTGT
ATGTGATTCGATAATGTTAtagaaaaatttatattccaaTTGTTTATTAA
TTGTAAATATAAGTTTTTCTTAATTCTGAAATAACTAACTGTCACATTAT
GATAAGAAGTGAGAGTGCTGTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00060901-protein

>TCONS_00060901-protein ID=TCONS_00060901-protein|Name=TCONS_00060901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MYKNVKLITFDAMNTLFTTKLPPGMSYYHAAKKMYPHLKEETEEISLCVT
NNFKEVYKIYYGEYTLNGQSKETCKTFWEGVIGKTLYKSGVDLTEIEMKN
VTDQLYGEYSTSKYWKPFNETHKVLDKLHAKGMRLGIVSNFDERLENVLK
SLDLMKYMEFVIFPPVTKGLGKPNPRVFQQLLKEYANCQPEEIVHIGDDK
ENDFIAAKKAGIKPLLLDKFNTQSDPNYITMTSLNDIFKFVEFDF
Run BLAST on NCBI

transcript from alignment at scaffold_349:220799..222273

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060901 ID=TCONS_00060901|Name=TCONS_00060901|organism=Clytia hemisphaerica|type=transcript|length=1475bp|location=Sequence derived from alignment at scaffold_349:220799..222273 (Clytia hemisphaerica)
ATTCACAGCACTCTCACTTCTTATCATAATGTGACAGTTAGTTATTTCAG
AATTAAGAAAAACTTATATTTACAATTAATAAACAAttggaatataaatt
tttctaTAACATTATCGAATCACATACAATTCAATACATTTTTGTCTACC
CGGTGCACCAAAAAAGtatcctctatacgataaaaaaagaatgaacaaaa
aatataccaAAGCCtgcaatatctcgacaaacctgtatactttttttggt
gcacccggtagttGATCAttcaaattcttcaaatttctccAAATTGTATT
ATACTCTGATCTGTTTAATTCAACTAAATATAGCAGGCATTAGTTATTAA
AATCTGTGggtatataaattattttaaaaatcaaactctacaaatttaaa
aatatcattcaGTGAGGTCATTGTAATATAGTTGGGGTCGGATTGGGTGT
TGAATTTATCTAGCAGCAAAGGTTTTATTCCAGCTTTTTTTGCAGCtata
aaatcattttctttatcATCACCAATATGAACTATTTCTTCTGGTTGACA
ATTAGCATACTCCTTTAATAACTGTTGAAAAACCCTTGGATTTGGCTTAC
CAAGGCCTTTAGTTACTGGTGGAAAAATAACAAACTCCATATATTTCATT
AAATCAAGACTTTTGAGTACATTTTCAAGCCTTTCATCAAAGTTTGATAC
AATGCCAAGCCTCATACCCTTAGCATGTAATTTATCAAGGACTTTATGAG
TTTCATTGAATGGTTTCCAATATTTTGATGTTGAATACTCTCCATATAGT
TGATCTGTTAcgtttttcatttcaatttcagttAAATCGACACCACTTTT
ATAAAGTGTTTTGCCAATAACACCTTCCCAAAACGTTTTACATGTTTCTT
TAGACTGACCATTTAAAGTATATTCTCCATAATAAATCTTATAGACTTCT
TTGAAGTTATTGGTAACACATAATGATATTTCTTCAGTTTCTTCTTTTAA
GTGAGGGTACATTTTCTTTGCTGCATGATAATAAGACATCCCAGGTGGTA
ATTTGGTAGTAAACAAAGTATTCATGGCATCAAAGGTTATCAATTTCACA
TTTTTGTACATGGCTTCTGATACTGAATCAACTTTAGGTTAaaataaaac
aagtgatactttaaTGCATGGACCAACGGAGAAATCAATTCCATTTCTAT
TAATCATCCATTATTTCTTTACAGACATAATATAACTAGCCAATAGCAGA
GGCCATGGTGTGCCTGCGCTCATAAAGGAATACCGAATTTGAGGAAGTGT
TACACGAACATAGCCCTTGAATATAACCAGAGTCCCAGAGAGCATTTAAT
CAGACACTATAGCATAAACACCTTAGCAGTGTCTATCATTGAATACTGAA
AACAAATAAACGACAAAGTCAACCACTAAGACACTAAAGTAGGGTAAAGT
AAAAGAGCAGTTGAGAACTTATCTT

Coding sequence (CDS) from alignment at scaffold_349:220799..222273

>TCONS_00060901 ID=TCONS_00060901|Name=TCONS_00060901|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_349:220799..222273 (Clytia hemisphaerica)
ttaaaaatcaaactctacaaatttaaaaatatcattcaGTGAGGTCATTG
TAATATAGTTGGGGTCGGATTGGGTGTTGAATTTATCTAGCAGCAAAGGT
TTTATTCCAGCTTTTTTTGCAGCtataaaatcattttctttatcATCACC
AATATGAACTATTTCTTCTGGTTGACAATTAGCATACTCCTTTAATAACT
GTTGAAAAACCCTTGGATTTGGCTTACCAAGGCCTTTAGTTACTGGTGGA
AAAATAACAAACTCCATATATTTCATTAAATCAAGACTTTTGAGTACATT
TTCAAGCCTTTCATCAAAGTTTGATACAATGCCAAGCCTCATACCCTTAG
CATGTAATTTATCAAGGACTTTATGAGTTTCATTGAATGGTTTCCAATAT
TTTGATGTTGAATACTCTCCATATAGTTGATCTGTTAcgtttttcatttc
aatttcagttAAATCGACACCACTTTTATAAAGTGTTTTGCCAATAACAC
CTTCCCAAAACGTTTTACATGTTTCTTTAGACTGACCATTTAAAGTATAT
TCTCCATAATAAATCTTATAGACTTCTTTGAAGTTATTGGTAACACATAA
TGATATTTCTTCAGTTTCTTCTTTTAAGTGAGGGTACATTTTCTTTGCTG
CATGATAATAAGACATCCCAGGTGGTAATTTGGTAGTAAACAAAGTATTC
ATGGCATCAAAGGTTATCAATTTCACATTTTTGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038231XLOC_038231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060901-proteinTCONS_00060901-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060901-exon-scaffold_349-1491911889:220799..222273TCONS_00060901-exon-scaffold_349-1491911889:220799..222273Clytia hemisphaericaexon
TCONS_00060901-exon-scaffold_349-1510915933:220799..222273TCONS_00060901-exon-scaffold_349-1510915933:220799..222273Clytia hemisphaericaexon
TCONS_00060901-exon-scaffold_349-1575043694:220799..222273TCONS_00060901-exon-scaffold_349-1575043694:220799..222273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:220799..222273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.1312	16.6697	4.50561	2.88839	4.98844	3.70711	4.32343	4.55349	2.50318	1.7258	3.0095	1.90368	1.73446	1.62584	1.7831	1.96382	1.89334	2.30819	0.953267	0.780166	3.44103	2.65846	27.1187	22.4862	2.82823	5.05107	2.42082	2.42201	9.64221	10.8439
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR006439HAD-SF_hydro_IA
IPR011949HAD-SF_hydro_IA_REG-2-like
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016787 hydrolase activity
Blast
[Close]
BLAST of TCONS_00060901 vs. Swiss-Prot (Human)
Match: HDHD3 (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Homo sapiens GN=HDHD3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.781e-18
Identity = 67/246 (27.24%), Postives = 118/246 (47.97%), Query Frame = 2 
Query:  374 NVKLITFDAMNTLFTTKLPPGMSYYHAAKKMYPHLKEETEEISLCVTNNFKEVYKIYYGEYTLNGQSKE-TCKTFWEGVIGKTLYKSGVDLTEIEMKNVTDQLYGEYSTSKYWKPFNETHKVLDKLHAKGMRLGIVSNFDERLENVLKSLDLMKYMEFVIFPPVTKGLGKPNPRVFQQLLKEYANCQPEEIVHIGDDKENDFIAAKKAG------IKPLLLDKFNTQSDPNYITMTSLNDIFKFVE 1090
             ++L+T+D  +TL   + P G +Y   A K   H   E E  +L     F++ Y+     +   G S   T + +W  V+ +T + +GV   +  +  + +QLY ++S    W+  +     L +   +G+RL ++SNFD RLE +L  L L ++ +FV+      G  KP+PR+FQ+ L+  A+ +P    H+GD+   D+   +  G      + P  LD     S P    + SL  +   ++
Sbjct:    6 QIRLLTWDVKDTLLRLRHPLGEAY---ATKARAH-GLEVEPSAL--EQGFRQAYRAQSHSFPNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQ-AVAPIAEQLYKDFSHPCTWQVLDGAEDTLRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAA-GWPKPDPRIFQEALR-LAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPALD 242
The following BLAST results are available for this feature:
BLAST of TCONS_00060901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDHD31.781e-1827.24Haloacid dehalogenase-like hydrolase domain-contai... [more]
back to top