TCONS_00060900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060900
Unique NameTCONS_00060900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060900 ID=TCONS_00060900|Name=TCONS_00060900|organism=Clytia hemisphaerica|type=transcript|length=847bp
gttttttttaatatttaaaaaaacatttttttgtttttttttgtagtttt
ggGAAAATATACCGGATATCGAAAGAAACACCTTTATTAAGAAAGAACgt
aaacataaaaaattttcaatatataATAACCAGGATATTTTGCAGTGCTa
caagaaattcaaactcaaagCAGTGTTTCCATTCAATTCTGTCAATTTTG
CGACTGAGCAACACGACGATTACGAGCTCTTTTTCATAAGGTCAAGTCCG
GAATGTACTTAAGGCTTAATATATATAATACACTCCTGTATCGGTGGCCC
AGTGAAGAACAATGGAAATCTCAACCCGGGCAAAAAGCGAGAACTTTATC
AAAAACCCCGACGACGAAGTGCTAAATAGCGCAAACCCAGGGAAAAATCC
TGACTTTTGACTTTGCTCggtatttattaaaaaattgccGATTTCCTTGA
CACAGTGACTGAATGGTGGACATTTCTCGTTTCAAAGTCAACCCTGTGAA
CTTTTAAGACCCACCGGgctactgagacaggggtgttataatgTCTTATA
AATGCCTGaaattttttcccgaaaattaaGAATAGGATTTCAGGATAAGT
TAAGGCTCAAAGTGcgaaaaatataagaacaaaaaagatttactggttcc
tataaaaaataaaaagagtgTTTTAACCCAATTACTTAAGGAAACAACTT
AAAAAGTGAACAGTAACAGTATCCTTTACAAAACCTGTCATGCGGGATTt
ctgatgttttgaaaaatagtcAGAAATCTAGTATCTTATCGGTTCCGGAC
GAATGTTCCGGCATGCGAATTATTGAGCATGCGCATAAAAGGGGAGA
Run BLAST on NCBI

transcript from alignment at scaffold_349:171760..172606

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060900 ID=TCONS_00060900|Name=TCONS_00060900|organism=Clytia hemisphaerica|type=transcript|length=847bp|location=Sequence derived from alignment at scaffold_349:171760..172606 (Clytia hemisphaerica)
TCTCCCCTTTTATGCGCATGCTCAATAATTCGCATGCCGGAACATTCGTC
CGGAACCGATAAGATACTAGATTTCTgactatttttcaaaacatcagaAA
TCCCGCATGACAGGTTTTGTAAAGGATACTGTTACTGTTCACTTTTTAAG
TTGTTTCCTTAAGTAATTGGGTTAAAAcactctttttattttttatagga
accagtaaatcttttttgttcttatatttttcgCACTTTGAGCCTTAACT
TATCCTGAAATCCTATTCttaattttcgggaaaaaatttCAGGCATTTAT
AAGAcattataacacccctgtctcagtagcCCGGTGGGTCTTAAAAGTTC
ACAGGGTTGACTTTGAAACGAGAAATGTCCACCATTCAGTCACTGTGTCA
AGGAAATCggcaattttttaataaataccGAGCAAAGTCAAAAGTCAGGA
TTTTTCCCTGGGTTTGCGCTATTTAGCACTTCGTCGTCGGGGTTTTTGAT
AAAGTTCTCGCTTTTTGCCCGGGTTGAGATTTCCATTGTTCTTCACTGGG
CCACCGATACAGGAGTGTATTATATATATTAAGCCTTAAGTACATTCCGG
ACTTGACCTTATGAAAAAGAGCTCGTAATCGTCGTGTTGCTCAGTCGCAA
AATTGACAGAATTGAATGGAAACACTGctttgagtttgaatttcttgtAG
CACTGCAAAATATCCTGGTTATtatatattgaaaattttttatgtttacG
TTCTTTCTTAATAAAGGTGTTTCTTTCGATATCCGGTATATTTTCccaaa
actacaaaaaaaaacaaaaaaatgtttttttaaatattaaaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038230XLOC_038230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060900-exon-scaffold_349-1491911889:171760..172606TCONS_00060900-exon-scaffold_349-1491911889:171760..172606Clytia hemisphaericaexon
TCONS_00060900-exon-scaffold_349-1510915933:171760..172606TCONS_00060900-exon-scaffold_349-1510915933:171760..172606Clytia hemisphaericaexon
TCONS_00060900-exon-scaffold_349-1575043694:171760..172606TCONS_00060900-exon-scaffold_349-1575043694:171760..172606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:171760..172606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.200957	0.772021	0.372947	0.435858	0.890016	0.101765	0.633418	0.0618182	0.122805	1.67375	2.06733	0.327741	0.106484	0.135815	0	0.127961	0.0667378	0.290946	0.0863706	0.142243	0.128265	0.26482	0.531112	0.406778	0.0844929	0.13744	0.067519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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