|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060895 ID=TCONS_00060895|Name=TCONS_00060895|organism=Clytia hemisphaerica|type=transcript|length=1287bp
CtcatttatttattctttttcaGGGTGAGTATTAAGaatagaaaagaaag
aaaaagtatataaataaataaaacaaaattataCATTGATGCACAATGAA
GATGATGCATTGAAAGAATCTTGAAGTTTTGGATTTAGTGTAATTGGATT
TACCCTGGCATATTTGGAATTGGTTAGATTGTAGTAAGCTAGCACAATGT
TACGATTTGCTTTCTCTCGTCAGCCACCTTTACGAAGCTGTATAATCCAA
CAAGGATATCGGTGTCTGTCAACTTCATCAAATCAATTTATCAGAGATTC
ACCTCGTGTGAATTGCCaacaagaaaaacaagaaaCCAACCAGCATTTTA
TAGATACTACCCGATTCAATGAACTTCAAGATATTCCAAAGCCAGCATTG
CTGCTTGGTTTCAGTGGAGCTATACCCTTTGTTAGTTTAGCATTTGCTTC
TAGTGTCACGTGTGACCAATACGCGAATCTGATTGGATTAGCACAAGTTG
GATATGGAGCTTGTATATTAACGTTTCTTGGTGGTGTTCATTGGGGCAAA
GAACTGATGGTAAATTCTAATAACCCAGATTTCAAAACATTAACTTGGAG
TGTTTTACCTTCGCTTTATGCTTGGTCAGCATTTTTCCTACCTTACCATT
TAGCTTTGTATTACTTAGCAACTGGACTAACAGGGGTTGCTATGTATGAC
GTCAGCGATCAATCATTACCTAAATGGTACCGCAAGTTACGTATACCTTT
GACTCTGTTGGCTGCAACTTCGATTGGTATGACTGGATATAATCTCCATC
CGTGATTGTTggatctacaatcagtgacaaaacatgtggcaatttcttga
aaaatcccTTCCCCCTAATATTAGTGTTAATGTGAGCTTTTTCTGAGCAT
GGTGGCAGCCTTTCCACCCATCAACATTGATACTAAGAGGGCTGAAGAGG
GAGGGAGTTCTTGCCACAATATTTAGTCACAGATTGTTAGTAAAGAACCA
ATGTTTTGGAGTTTCGACttatgattttctttttatgtAAGATTGATCTA
AGATATTAGTTAGAATATCCAATCAATTTGGAGTCTATAGTTCAGTGGTG
TTTTTTCAAAACACTTTCCGCCATTTTTTTCAATAgtattttgtatgtat
tttgtgtagatttgaatattttaagaaaattcttGATCATTTTAAGGAGT
TACTGTACTGATGACCACCAATCGGACAacaattcttaaattttctaagG
ATTTAATTGTAAAAAGAACTTAGTAAACTGATACATG Run BLAST on NCBI protein sequence of TCONS_00060895-protein >TCONS_00060895-protein ID=TCONS_00060895-protein|Name=TCONS_00060895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MLRFAFSRQPPLRSCIIQQGYRCLSTSSNQFIRDSPRVNCQQEKQETNQH
FIDTTRFNELQDIPKPALLLGFSGAIPFVSLAFASSVTCDQYANLIGLAQ
VGYGACILTFLGGVHWGKELMVNSNNPDFKTLTWSVLPSLYAWSAFFLPY
HLALYYLATGLTGVAMYDVSDQSLPKWYRKLRIPLTLLAATSIGMTGYNL
HP Run BLAST on NCBI transcript from alignment at scaffold_349:90634..91920 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060895 ID=TCONS_00060895|Name=TCONS_00060895|organism=Clytia hemisphaerica|type=transcript|length=1287bp|location=Sequence derived from alignment at scaffold_349:90634..91920 (Clytia hemisphaerica)
CATGTATCAGTTTACTAAGTTCTTTTTACAATTAAATCcttagaaaattt
aagaattgtTGTCCGATTGGTGGTCATCAGTACAGTAACTCCTTAAAATG
ATCaagaattttcttaaaatattcaaatctacacaaaatacatacaaaat
acTATTGAAAAAAATGGCGGAAAGTGTTTTGAAAAAACACCACTGAACTA
TAGACTCCAAATTGATTGGATATTCTAACTAATATCTTAGATCAATCTTa
cataaaaagaaaatcataaGTCGAAACTCCAAAACATTGGTTCTTTACTA
ACAATCTGTGACTAAATATTGTGGCAAGAACTCCCTCCCTCTTCAGCCCT
CTTAGTATCAATGTTGATGGGTGGAAAGGCTGCCACCATGCTCAGAAAAA
GCTCACATTAACACTAATATTAGGGGGAAgggatttttcaagaaattgcc
acatgttttgtcactgattgtagatccAACAATCACGGATGGAGATTATA
TCCAGTCATACCAATCGAAGTTGCAGCCAACAGAGTCAAAGGTATACGTA
ACTTGCGGTACCATTTAGGTAATGATTGATCGCTGACGTCATACATAGCA
ACCCCTGTTAGTCCAGTTGCTAAGTAATACAAAGCTAAATGGTAAGGTAG
GAAAAATGCTGACCAAGCATAAAGCGAAGGTAAAACACTCCAAGTTAATG
TTTTGAAATCTGGGTTATTAGAATTTACCATCAGTTCTTTGCCCCAATGA
ACACCACCAAGAAACGTTAATATACAAGCTCCATATCCAACTTGTGCTAA
TCCAATCAGATTCGCGTATTGGTCACACGTGACACTAGAAGCAAATGCTA
AACTAACAAAGGGTATAGCTCCACTGAAACCAAGCAGCAATGCTGGCTTT
GGAATATCTTGAAGTTCATTGAATCGGGTAGTATCTATAAAATGCTGGTT
GGtttcttgtttttcttgttGGCAATTCACACGAGGTGAATCTCTGATAA
ATTGATTTGATGAAGTTGACAGACACCGATATCCTTGTTGGATTATACAG
CTTCGTAAAGGTGGCTGACGAGAGAAAGCAAATCGTAACATTGTGCTAGC
TTACTACAATCTAACCAATTCCAAATATGCCAGGGTAAATCCAATTACAC
TAAATCCAAAACTTCAAGATTCTTTCAATGCATCATCTTCATTGTGCATC
AATGtataattttgttttatttatttatatactttttctttcttttctat
tCTTAATACTCACCCtgaaaaagaataaataaatgaG Coding sequence (CDS) from alignment at scaffold_349:90634..91920 >TCONS_00060895 ID=TCONS_00060895|Name=TCONS_00060895|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_349:90634..91920 (Clytia hemisphaerica)
TCACGGATGGAGATTATATCCAGTCATACCAATCGAAGTTGCAGCCAACA
GAGTCAAAGGTATACGTAACTTGCGGTACCATTTAGGTAATGATTGATCG
CTGACGTCATACATAGCAACCCCTGTTAGTCCAGTTGCTAAGTAATACAA
AGCTAAATGGTAAGGTAGGAAAAATGCTGACCAAGCATAAAGCGAAGGTA
AAACACTCCAAGTTAATGTTTTGAAATCTGGGTTATTAGAATTTACCATC
AGTTCTTTGCCCCAATGAACACCACCAAGAAACGTTAATATACAAGCTCC
ATATCCAACTTGTGCTAATCCAATCAGATTCGCGTATTGGTCACACGTGA
CACTAGAAGCAAATGCTAAACTAACAAAGGGTATAGCTCCACTGAAACCA
AGCAGCAATGCTGGCTTTGGAATATCTTGAAGTTCATTGAATCGGGTAGT
ATCTATAAAATGCTGGTTGGtttcttgtttttcttgttGGCAATTCACAC
GAGGTGAATCTCTGATAAATTGATTTGATGAAGTTGACAGACACCGATAT
CCTTGTTGGATTATACAGCTTCGTAAAGGTGGCTGACGAGAGAAAGCAAA
TCGTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060895-exon-scaffold_349-1491911889:90634..91920 | TCONS_00060895-exon-scaffold_349-1491911889:90634..91920 | Clytia hemisphaerica | exon |
| TCONS_00060895-exon-scaffold_349-1510915933:90634..91920 | TCONS_00060895-exon-scaffold_349-1510915933:90634..91920 | Clytia hemisphaerica | exon |
| TCONS_00060895-exon-scaffold_349-1575043694:90634..91920 | TCONS_00060895-exon-scaffold_349-1575043694:90634..91920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:90634..91920 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021836 | DUF3429 |
Blast
The following BLAST results are available for this feature:
|
