TCONS_00060877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060877
Unique NameTCONS_00060877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060877 ID=TCONS_00060877|Name=TCONS_00060877|organism=Clytia hemisphaerica|type=transcript|length=829bp
CGCCATATAAGGAGTTTTAATGTGGATTCTACAATTAATTGATTCCTAAA
CAATGGAGGAACAATAACAACATGAAGGCTTCTATACGTCCCACCCTGTA
TACTATGATGGCTGACTGACTGCTCAATTTATGAGTGTTTTCTACTGTTA
GAATGAAACTTTCTAGAACTGAATTTTGTTGGCTTTTGAGAGAGAGATAT
TATTGTGTTTTTTGTTATGTCCAGCAGTGCAgtgaaactttttttatata
ttttttttgactttattttctGCCTGTCGCTTTTCAGTGTTCTGGACACT
TTTTACAATTTCATGATTGATAGAGTTAATTTAAAGAgttgaaacatttg
gtttgatttaacacttttcttttcttgttcCAAACAGCTGTCGCttaaca
aaaacttttcaataaaaatgggTGATCAATATGAAGTTACTTTGGATGGC
GGTGGCCCATGGGGTATCAGACTGCAAGGTGGAAAAGATTTTGGCGTTCC
ATTGAATGTTGCCAGAGTTACTCCTGGTAGTAAAGCATCAACCAAAGGAA
TCTTAGCCGGTGATTCCATTGTCAGCATCAATGGCATTGCTACAAGCACA
CTTTCACACATGGACGCTCAAAACACGATCAAACAATCAGGTTCAACTCT
ACAGTTGACAATGAAaaaaggtAAAGGAGTCTCACTAGGTGAAGTCAAAC
AAGTCGGATCAGCTGGTTTTGCCGCTGCACCAAGCAAAACATTATATACA
ACCGACGTCACTCATTCAGCTGGAGTTGACCACAAATTTAACGCAAAACC
GAAAGCTTTTGGTGCAAGTCCCAGTGGNN
Run BLAST on NCBI

protein sequence of TCONS_00060877-protein

>TCONS_00060877-protein ID=TCONS_00060877-protein|Name=TCONS_00060877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MGDQYEVTLDGGGPWGIRLQGGKDFGVPLNVARVTPGSKASTKGILAGDS
IVSINGIATSTLSHMDAQNTIKQSGSTLQLTMKKGKGVSLGEVKQVGSAG
FAAAPSKTLYTTDVTHSAGVDHKFNAKPKAFGASPSX
Run BLAST on NCBI

transcript from alignment at scaffold_349:674578..678826-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060877 ID=TCONS_00060877|Name=TCONS_00060877|organism=Clytia hemisphaerica|type=transcript|length=4249bp|location=Sequence derived from alignment at scaffold_349:674578..678826- (Clytia hemisphaerica)
CGCCATATAAGGAGTTTTAATGTGGATTCTACAATTAATTGATTCCTAAA
CAATGGAGGAACAATAACAACATGAAGGCTTCTATACGTCCCACCCTGTA
TACTATGATGGCTGACTGACTGCTCAATTTATGAGTGTTTTCTACTGTTA
GAATGAAACTTTCTAGAACTGAATTTTGTTGGCTTTTGAGAGAGAGATAT
TATTGTGTTTTTTGTTATGTCCAGCAGTGCAGTGAAACTTTTTTTATATA
TTTTTTTTGACTTTATTTTCTGCCTGTCGCTTTTCAGTGTTCTGGACACT
TTTTACAATTTCATGATTGATAGAGTTAATTTAAAGAGTTGAAACATTTG
GTTTGATTTAACACTTTTCTTTTCTTGTTCCAAACAGCTGTCGCTTAACA
AAAACTTTTCAATAAAAATGGGTGATCAATATGAAGTTACTTTGGATGGC
GGTGGCCCATGGGGTATCAGACTGCAAGGTGGAAAAGATTTTGGCGTTCC
ATTGAATGTTGCCAGAGTACGTTTTTTATTAATACAGAATATTAGAATTA
TTATTTTGTTTTCTCTGTTTGAAAAAAGATGAAGACTCTCGACTCTTTAT
AAAGAGTAGATTATAGTAGTTATATAAGTTGTAAAATCTCTACAAGTGGT
ATCTTGGAAAAGTTGAATTTATGCATCATTAACGTCACAAATGACAGAAA
TTAATTTTACTCAAAATAAACATTTGGCTAAAGCTTCAGATGCATCCGGC
TGGACTTAGAATTTTTTTCAAGTTTAATAGTGACCAAAGGGGGTCTCGAA
CCAGGAACCTATAGTTTCCGAAACCAATGCCCTATCCACTAGGCCAAACC
GGCTGCTGAAAATTCGTTATTTGGGGTTACTTATACGAATGTCTTAGTAC
TATATATAAATAAGTCTGACTGACGAGTTAGGCTAACTGTTATGATCGCC
ATTACTCCGAAGAAGCCACCACACGTGTGCACCACGAAATTTCCACGGTA
CGAATTTGCGCAATTTAATTTTATAAAAAAAATCACCTCTAAATTGGTCC
TGGCAAAATAGCCCATTTTGTAAACAAAAAATTCTCTCAACCGCAAAATT
AAATTCCACGAAACTTTTGAGCTGTGAACTGCGATATTAGAAAGGTCGAA
ATCACATATAGACAAAATATTTTTTCCTCCCTGACGGCTAAGCAAAAAAT
TTAGTTTCCACCATCGGTTCTGACCTTCCTACCATTACTATCTCTAATAA
GAGGTGTCAGAATTAGAAGAGGGGTGTCAATATTAGACCAACTTATAGCT
TACAGGGTGGTTGCTTTACCAAAAAATCTATTATCTAAAATGATGATTTA
CACGTAGGTTTATCATTGATAAAATATTTATTCCTAAATTGACTTTTTGT
TTTGTAGTAAGCGGTTACCATTTTGACAAAAATTAGCAGCTAAAACATTT
GTGCTAACATAAAAAATATTAGATAATTTTTGCATCAGGATAGGTTGATA
CCATATCTCTTTTTAAGCACCAAATTTTTATCTTCATTGGTTGCTAAGAT
TAAGTAATGTTTTTGGAGTTTCGCCACTAATCTTGAAGTGAGAAATGCCT
ATCCTATTATATCATCCTAAATTATGGAAGAATTGACCAATTTGCAATAT
TTCTTCTGTATATATGGTATATATCAAATGGCAGAGGCCATAATTAACTT
GGTTGTGTCAAATTAATTTGGTATCATTAAAACATAATCCAATATAGTTG
CTTTTTAAGAGAAAATCTGATGCATGATTTGACTGTTCTGCCAAGTGCAT
TCTAAATTTAATAGATTTATGTTGGGCAACAAAATGGGTGTGTTTCAAAT
ACAAAAAAATCAAATTAGTTTTGATTGAACATTAATTAGGCCGCAAATGA
TTTTTTCTTCAAATAAGCTAAATTTGATGAGAACCAACTTTTCCTTTGAA
TATGAAAAAGTACTTCCTGCTATTCTGACAAATTTTTAAATGGTATATAG
TTAATGTTTTTATGTACATTGTTTTTAAATCTAATTTCTATTCTTTTCTC
TGAATGACTTAACTATTAAAATAAGAGTTTCAAAAGACATATTAAGTCCT
TGTATCTAAAACAATAAATCTCTGTATTAAAGGCTTTAAATTTTTTAGGT
CTTCTATAATATTCATTTGGTTAAAAAGCTCTTTATAAGACATAGCAATA
GCATAGTAAAAGTAATAGCAGGTTAAATGAAACAAAATTAGGAGTTTAGA
TTCATCAAAATAATGGTTAAGATCTCTAAAAGTATATTTTCTGTTTCTGG
ACAATTCTACCACTAGGGTGCCTCTCAAAAAGCCTACTGTTTCAAAACCA
TTTGATTGAATTAATTCATGAATAATTGAAATTTTACCGACCTATTTTTA
TAAAAAGTTTTTCTCATTAAGGAGAGTAAAGAATTTTAATCTTCCCTCTG
TTCATTGAGATTGTGTTCAATGCGGTACTGTGGTCATTAATAAATTATAT
TTCATTAGCTTTTGTAAAGAGTACAAAATAGGGATATAACTTTTTTGGTA
TGTTTTTCATAACAAATTTATATTCAAAATTCACCTGCTGTCACTAAAAT
TTACTGCAGTTTTGAAAACACAAATAAACTTGTTTAGACTTATTTTGACA
ATCATTAGTTGAAAAAAAGAGGCTGAAATGATGAATCAAATCAAACATGA
AAATTCAAATTTCAAAGAATGGTGTTATAATTTAGTGCCGTAGGAAGCAT
TTCCATATTGGGGGAGCTGAAGTTTAGTGACACTGCGAGGACCAACCATG
GTTTGGCCCGAGGGGGAAAATTTTGCCCCCCCCAGTTGCTACGGCACTGT
AATTTTTCAGACTTTCCAAAAGTTTTTTTGACTTTTTATCAAGAACTGCG
TCAAAACACAAACAAGTTGTTATTATAATAAACACAATATTTCAAACATT
CGTCAATAATAGCCTTAGTCACTGTGATAGGAGATTCCAATTCATTGTTG
ACAGTATTTTGAGAGGGGTGTGTGTTTATCCTTTATCATAAAATTTGCTT
CTAGATTTGTTTCTTAATCTGTCCCATAGAGCTGAAATCCATATTGACAG
ACCTTTATTTAATTGTGGTTTTTTAGAAGAAACCTCAGATTTGTGGTCTA
CAGATTTTATCGGAATTCCTACGTATACCATTGAATAAGTTTTCTAAAGA
AAAAATCAGAAGCCTGACATTGATCAAAAAAATTTTTTAAATGACTAAAA
CATCCAAAATATTTATGCATCAAAAACTTTTTAAAATTAATTCCATACCA
TCAAATCAATCAATTGTTAAGGCGTTTTCAAGCAAATCTCATGAACCTCT
TATCTTTTGGAACTTTCCCAAGATATCTTTTTACTTGATGTAGATTGCTT
TCTTATCTGGAATTAGAAAAAAACACTTCAGAAAGAGGGCTCTTAAAGAT
ACAATTGACCAATAACAAGAAATCTTACCCTTACAAGCACATAAATAGTT
ATTGGTTCTTAGAATATAATATCTGCTGTTTCTCATCTTTTTACCTTCAA
GGCACCATTGATAACTAAACAATGCTTGGTTAAATTTGATATAACTCACA
AATCATAAAAAAAAACAAAATAGCCTGAATGTATGCTTTTATGAAACTTG
AAATTTTAATTTCGGTCTTTTTGTTTTAGGTTACTCCTGGTAGTAAAGCA
TCAACCAAAGGAATCTTAGCCGGTGATTCCATTGTCAGCATCAATGGCAT
TGCTACAAGCACACTTTCACACATGGACGCTCAAAACACGATCAAACAAT
CAGGTTCAACTCTACAGTTGACAATGAAGTAAGTACTTTCTGGATGTTGT
ACGCTCAGAAAATTATAAACATTTTTGCCTTGTTCAAAGAAAAAGGGGAA
TCTTTACCACAATTTTGATTTTTTCTGCATCCTAACACTGGCAATTGCGA
TTTCAATGTTATAACACCTCTTACTCCTACCTCCTGCAGCCTTTATAAAG
TGAGAAATTTTATGGTTTTTTTTTTTGAGAATATCACCTTTGATTTTAAA
CAATTAATTCTTTCATATCTCCTGATTTTTTATAGAAAAGGTAAAGGAGT
CTCACTAGGTGAAGTCAAACAAGTCGGATCAGCTGGTTTTGCCGCTGCAC
CAAGCAAAACATTATATACAACCGACGTCACTCATTCAGCTGGAGTTGAC
CACAAATTTAACGCAAAACCGAAAGCTTTTGGTGCAAGTCCCAGTGGNN

Coding sequence (CDS) from alignment at scaffold_349:674578..678826-

>TCONS_00060877 ID=TCONS_00060877|Name=TCONS_00060877|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_349:674578..678826- (Clytia hemisphaerica)
AAAAGGTAAAGGAGTCTCACTAGGTGAAGTCAAACAAGTCGGATCAGCTG
GTTTTGCCGCTGCACCAAGCAAAACATTATATACAACCGACGTCACTCAT
TCAGCTGGAGTTGACCACAAATTTAACGCAAAACCGAAAGCTTTTGGTGC
AAGTCCCAGTGGNGTTACTCCTGGTAGTAAAGCATCAACCAAAGGAATCT
TAGCCGGTGATTCCATTGTCAGCATCAATGGCATTGCTACAAGCACACTT
TCACACATGGACGCTCAAAACACGATCAAACAATCAGGTTCAACTCTACA
GTTGACAATGAAATGGGTGATCAATATGAAGTTACTTTGGATGGCGGTGG
CCCATGGGGTATCAGACTGCAAGGTGGAAAAGATTTTGGCGTTCCATTGA
ATGTTGCCAGAAAAAGGTAAAGGAGTCTCACTAGGTGAAGTCAAACAAGT
CGGATCAGCTGGTTTTGCCGCTGCACCAAGCAAAACATTATATACAACCG
ACGTCACTCATTCAGCTGGAGTTGACCACAAATTTAACGCAAAACCGAAA
GCTTTTGGTGCAAGTCCCAGTGGNGTTACTCCTGGTAGTAAAGCATCAAC
CAAAGGAATCTTAGCCGGTGATTCCATTGTCAGCATCAATGGCATTGCTA
CAAGCACACTTTCACACATGGACGCTCAAAACACGATCAAACAATCAGGT
TCAACTCTACAGTTGACAATGAAATGGGTGATCAATATGAAGTTACTTTG
GATGGCGGTGGCCCATGGGGTATCAGACTGCAAGGTGGAAAAGATTTTGG
CGTTCCATTGAATGTTGCCAGAAAAAGGTAAAGGAGTCTCACTAGGTGAA
GTCAAACAAGTCGGATCAGCTGGTTTTGCCGCTGCACCAAGCAAAACATT
ATATACAACCGACGTCACTCATTCAGCTGGAGTTGACCACAAATTTAACG
CAAAACCGAAAGCTTTTGGTGCAAGTCCCAGTGGNGTTACTCCTGGTAGT
AAAGCATCAACCAAAGGAATCTTAGCCGGTGATTCCATTGTCAGCATCAA
TGGCATTGCTACAAGCACACTTTCACACATGGACGCTCAAAACACGATCA
AACAATCAGGTTCAACTCTACAGTTGACAATGAAATGGGTGATCAATATG
AAGTTACTTTGGATGGCGGTGGCCCATGGGGTATCAGACTGCAAGGTGGA
AAAGATTTTGGCGTTCCATTGAATGTTGCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038220XLOC_038220Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060877-proteinTCONS_00060877-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060877-exon-scaffold_349-1575043694:678311..678826TCONS_00060877-exon-scaffold_349-1575043694:678311..678826Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1575043694:674999..675147TCONS_00060877-exon-scaffold_349-1575043694:674999..675147Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1575043694:674578..674741TCONS_00060877-exon-scaffold_349-1575043694:674578..674741Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1510915933:678311..678826TCONS_00060877-exon-scaffold_349-1510915933:678311..678826Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1510915933:674999..675147TCONS_00060877-exon-scaffold_349-1510915933:674999..675147Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1510915933:674578..674741TCONS_00060877-exon-scaffold_349-1510915933:674578..674741Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1491911889:678311..678826TCONS_00060877-exon-scaffold_349-1491911889:678311..678826Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1491911889:674999..675147TCONS_00060877-exon-scaffold_349-1491911889:674999..675147Clytia hemisphaericaexon
TCONS_00060877-exon-scaffold_349-1491911889:674578..674741TCONS_00060877-exon-scaffold_349-1491911889:674578..674741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:674578..678826 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.20444	2.45523	2.98033	2.72563	53.7084	45.9779	89.1646	101.589	40.4566	67.0151	43.4223	32.6981	108.88	119.436	37.4965	41.983	58.5067	70.5785	117.703	87.1404	38.1194	44.122	17.5178	24.0385	42.883	48.9641	73.7552	77.8761	58.3041	91.1747
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00060877 vs. Swiss-Prot (Human)
Match: LDB3 (LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.242e-24
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:  430 YEVTLDGGGPWGIRLQGGKDFGVPLNVARVTPGSKASTKGILAGDSIVSINGIATSTLSHMDAQNTIKQSGSTLQLTMKKGK 675
            Y VTL G GPWG RLQGGKDF +PL ++R+TPGSKA+   +  GD +V+I+G+ T T++H++AQN IK +   L LT++K K
Sbjct:    3 YSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84
The following BLAST results are available for this feature:
BLAST of TCONS_00060877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDB31.242e-2453.66LIM domain-binding protein 3 OS=Homo sapiens GN=LD... [more]
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