TCONS_00060877-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060877-protein
Unique NameTCONS_00060877-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length137

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060877-protein ID=TCONS_00060877-protein|Name=TCONS_00060877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MGDQYEVTLDGGGPWGIRLQGGKDFGVPLNVARVTPGSKASTKGILAGDS
IVSINGIATSTLSHMDAQNTIKQSGSTLQLTMKKGKGVSLGEVKQVGSAG
FAAAPSKTLYTTDVTHSAGVDHKFNAKPKAFGASPSX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038220XLOC_038220Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060877TCONS_00060877Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 13..86
e-value: 4.1E-13
score: 59.6
IPR001478PDZ domainPFAMPF00595PDZcoord: 9..81
e-value: 1.8E-16
score: 60.2
IPR001478PDZ domainPROSITEPS50106PDZcoord: 4..86
score: 15.863
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 7..87
NoneNo IPR availableGENE3D2.30.42.10coord: 2..106
e-value: 1.8E-21
score: 75.3
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 5..83
e-value: 9.79853E-20
score: 77.607

Blast
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BLAST of TCONS_00060877-protein vs. Swiss-Prot (Human)
Match: PDLI7 (PDZ and LIM domain protein 7 OS=Homo sapiens GN=PDLIM7 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.878e-25
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 0 
Query:    3 DQYEVTLDGGGPWGIRLQGGKDFGVPLNVARVTPGSKASTKGILAGDSIVSINGIATSTLSHMDAQNTIKQSGSTLQLTMKKGKGVSLGEVKQVGSAGFAAAPSKTLYTTDVTHSAGVDHKFNAKPKAFGASP 135
            D ++V L+G  PWG RLQGGKDF VPL+++R+TPG KA+  G+  GD ++SI+G    +L+H++AQN I+  G  L L + + + V   + K   ++  AA P +  +   V+         N   + FGA P
Sbjct:    2 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPV---QSKPQKASAPAADPPRYTFAPSVS--------LNKTARPFGAPP 123
The following BLAST results are available for this feature:
BLAST of TCONS_00060877-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDLI77.878e-2537.59PDZ and LIM domain protein 7 OS=Homo sapiens GN=PD... [more]
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