TCONS_00060875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060875
Unique NameTCONS_00060875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060875 ID=TCONS_00060875|Name=TCONS_00060875|organism=Clytia hemisphaerica|type=transcript|length=698bp
AGCACCACCCGCACCGCCCATAGAAGATGGGAAGCCAAAATTATCCATGG
TCGCAAGTAATCCGTACCATCTTCCTATAAAAGctgTGGTATCGAACGAA
GGTGGTAACCCAATTATGGATTCTTTAAAGtccaaaatgaaagaaatgaa
cATCAACAAAGAAAGACTGGATCGAACATCAAGCGTCTccaatgaaaaaa
aaggaaattttctcTCACAAAGCTCACGTGAATCTGCAGCTCGTGCGCCA
TCACCTTTGCCGGCACCGAAAAGTCCAACTTCTCCAGCTTTCAAAATGAC
ATTGGCCAAGGGGGAAAGTCCTTTTGCAGCGGGCGCTGAATCGAACGTTC
TAATGGCGAGTCTTAAAAACACCATCGAAGGTGATCGAATGACCCTGGGT
TTACGACAAACACGTGGTATGGCTGCTGGCTCCCATTCTCCCAGCATGCA
ACGCATGAAAACAGCTTTCCATGAGGATGATAAAAGTCCTTCAGCTTCGC
GAAAAACAAGCTCAAACTCTGCTCCTGTTGGAGACGAGCTGTAACATTAT
TTTCCTTAAAGAATCTTTCAAAATCTAATTGTACATactcttttttattt
catatttttgatatttttttcgtacAGATTTTTTTCGGTAAAttatattg
tttttgttttaaccaACTTTACCTGCCAAACCCTCAAGCTATTTTACG
Run BLAST on NCBI

transcript from alignment at scaffold_349:661333..668976-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060875 ID=TCONS_00060875|Name=TCONS_00060875|organism=Clytia hemisphaerica|type=transcript|length=7644bp|location=Sequence derived from alignment at scaffold_349:661333..668976- (Clytia hemisphaerica)
AGCACCACCCGCACCGCCCATAGAAGATGGGAAGCCAAAATTATCCATGG
TCGCAAGTAATCCGTACCATCTTCCTATAAAAGGTAATTGATTTAGATTC
TGATTTCTGACCGCAGTGCAGTGGTAGAGCATCTGGCTACGGTGCGCAAG
GTTGTGGGTTCAGACCCTAGCTGGGTCATACCAAAGATTCTCAAAATGGT
ACTTGATACCTATCTGCTTGATGCTCAGCAATTAAGAGAAGGATCCATGT
TAAGTGGAGCAATCCAGGGAGAAAGAGTGGCGCCCTCCCCTACCTTCGGG
TAGATAGCTATCAAAAGAGGAGCCTTCGGGTCGCCTCCGACTGCGGTCGC
AGACTTACTTACTTAGATTCTGATTTAGTTTGCATGAACTCTAAGCACTT
TGATCTGGGGCCGTTTTTTGTTTTTGTAAATTTAGATTGAGTTTCTGATT
CCATGAAGCTGGGAGTCTTGGGAATACGTATATAAATTGGTTATTATAAG
TTAAATTTTGCTAGAAAAAAATTGGAGTTAGTATTTTGGCCGTTAAACGG
GCATAAAAAAGTGTTTAGAAAAACCCCTGAACATGTATTTGGGAATAATG
TGCTTTTCCAGAAAAAATTAAATAGGAATGGAGAAATATAATTTTTCATT
TTGAAACTGCCACAGCTACAATTTTTCATTTATCCAATTGCTAAATCTTT
TTGTCTCAAATAAATATATCTTTGTATCATTAAAAACAATATTGATAATA
AACATGGTTTCAAAATCTTTCCACGCTCGATCGAGCCGATAATAATTGGT
CAGCATCTTGAAAATATTTCTCCACATTAAAAATAGTTTCTTTAGTTTTC
GAATCAAAAGAAACATTCCTATTCGATGAAGTAGAGATACATTTCAATTC
AGTTGCTGGATCCACAACAACACGTGGGTGGTTCTCTTTACCATCGACCT
GTCCGGAATTNCCCCCGGACAACCCAAATTACCCCTGGACAGAGCAAATT
TACTCCCCGGACAAGGCAAAATTTGATGATTTTTCATTTACCCCCCGGAC
ACTATATCCTCCACCTCCCCCCCCTTATGTACAGACATTTTCTGGAAGAG
CCCAATTTTTTAATTCATTTTTTATTTTTTCAGCTGTGGTATCGAACGAA
GGTGGTAACCCAATTATGGATTCTTTAAAGTCCAAAATGAAAGAAATGAA
CATCAACAAAGAAAGACTGGATCGAACATCAAGCGTCTCCAATGAAAAAA
AAGGAAATTTTCTCTCACAAAGCTCACGTGAATCTGCAGGTAACACCTTT
TTTTTTTAATAAGAACGTCAAAAATTTTCGAAGCCTTCGGATGTTCTTAG
TTTTTTGAATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAG
CATTTTTTGAGCATTTTGATGTAATTTCTTAAGAAATTGCATGTTTTTAA
GTCTCCAAAGCCTAAGTATGTTCTTAGAATGTTCTTAAACTTTGGGCCTC
GAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAACGTGTAA
CGCTTCAACCTGATTCTATCTCGTTCATGTTCATTTTGGTAATCGTTAAA
CGACTTTGAACGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGA
CACATATTTCATATCAGGACAATGTCTCCCTATCAATATAATATGGGCAT
TATCATTTTGCACAACCAGTCAAAACCAGTCAAAACCAGTCAAAACCAGT
CAAAACCAGTCGAAACCAGTCAAAATCAGTCAAAATCAGTCACTTCCAGG
CAAACTGAATCGCTTTTTGGCTAAAGGAGTCAATGGAGGTGACAATCACT
CAATTAAGTCATTTAAAAAGTCGTTTAAAAGGGGACAACCAGGCAACTGG
GTCATTTAAAAGGGGACAACCAGTCAACTGAGTCATTTAAAAGGGGACAA
CCAGTCAAAAGAGTCATTTAAAAGGGGACAATCAGTCAATTAAGTCATTT
AAAAGGGGACAACCAGTCAAAAGAGTCATTTAAAAGGGGACAAACAGTCA
ATTGAGTCATTTAAAAGGGGACAACCAGTCAAAAAAGTCATTTAAAAGGG
GACAACCAGTCAATTCAGTCATTTAAAAGGGGACAACCAGTCAAAAAAGT
CATTTAAAAGGGGACAAACAGTCAAAACCAGTCAAAACCAGTCAAAACTA
GTCAAAATCAGTCAAAACCAGTCACTTCCAGGCAAACTGAATCGCTTTTT
GGCAAAAGGAGTCAATGGAGGTGACAATCACTCAATTAAGTCATTTAAAA
AGTCGTTTAAAAGGGGACAACCATTTTTTTTTTTGGAGATAATTCTCTTA
ATGAGTCTAGCATATCTAGTACATATATTTGTCAAGTTGAAAGGAGTTGA
ATAAAAACCAGATCTAAAATCCTCAGGTCACTTTTGACATTGTTTTTTGT
TTGGAATATTGTTAGGGGTCCTTTTACTGCCCGTTATTATTGCTCCTTCG
GTAACTGACGTGTGTCAGTTCCATAAGCTTAGGTTCCATTTTAAATGACT
CCTTTCATGGTTACACTTTTTATTTAATGACTTTTTTTGACTGGTTGTCC
CCTTTTAAATGACTTTTTTTGACTGGTTGTCTCCTTTTAAATGACTCCTT
TGACTGGTTGTCCCCTTTTAAATGACTGAATTGACTGGTTGTCCCCTTTG
AAATGACTGAATTGACTGGTTGTCCCCTTTGAAATGACTTTTTTGACTGG
TTGTCCCCTTTTAAATGACTGAATTGACTGGTTGTCCCCTTTTAAATGAC
TCAGTTGACTGGTTGTCCCCTTTTAAATGACCCAGTTGACTGGTTGTCCC
CTTCTAAACGACTTTTTAAATGACTTAATTGAGTGATTGTCACCTCCATT
GACTCCTTTTGCCAAAAAGCGATTCAATTTGCCTGGAAGTGACTGGTTTT
GACTGATTTTGACTAGTTTTGACTGGTTTTGACTGGTTTTGACTGTTTGT
CCCCTTTGAAATGACTTTTTTGACTGGTTGTCCCCTTTTAAATGACTTTT
TTGACTGGTTGTCCCCTTTTAAATGACTTTTTTGACTGGTTGTCCCCTTT
TAAATGACTCTTTTGACTGGTTGTCCCCTTTTAAATGAATTTTTTGACTG
ATTGTCCCCTTTTAAATGACTTTTTTGACTGGTTGTCCCCTTTGAAATGA
CTTTTTTGACTGATTGTCCCCTTTTAAATGACTCTTTTGACTGGTTGTCC
CCTTTTAAATGACCCAGTTGCCTGGTTGTCCCCTTTTAAACGACTTTTTA
AATGACTTAATTGAGTGATTGTCACCTCCATTGACTCCTTTAGCCAAAAA
GCGATTCAGTTTGCCTGGAAGTGACTGATTTTGACTGATTTTGACTGGTT
TCGACTGGTTTCGACTGGTTTCGACTGGTTTTGACTGGTTTTGACTGGTT
TTGACTGGTTTTGACTGGTTTTGACTGGTTTTGACTGGTTGTGCAAAATG
ATAATGCCCATATAATATGCTGATATAAGTAAAAAAACGCGTTTTTCTTT
TCCTCCTTCTGACCAATCTTGCACCACATCCTTGTCAATCCAATGTGTAA
AAGCTTGTGAATTAAAATTGATGAGTAAGCAAACGATATCACTCTTATTT
AAAAATAAAACCTTATAATGAAATAAAATGCCTTTTTGTATGTTTGAGTA
CAGCGCTTGTCGTAGTATACTTTTTTTGCTCAGAATATCACCTCCATCCG
ATGGAATCAATCATTTTTCTTGAATTCGACATTGAAAATAATCAATTTTT
TATTCATTTTAGGTGTTAAAGGACTTTTACCTGTAACGTCTGTCTTTCAG
TCATAAAACAAGTTGCCAGGCCTTATTCGTGGGCCCTCTCCCAAAAAAAG
TCTCAAAATTCTATCTACTTTCAAAAAAATAACATACAGTTACGTTCCAC
AGAAGATGCTAAGATCCTAAGGGCTTGCCCCTTTATGATGAGTGACAGTA
GCGTTAAGGTAGAGCATCCAGCTACGGTGCGCGAGGTTGTAGATTTGATC
CCCAGATCCCCATCTGGTACTTGATGCCTCTCTGCTTGATGCTCAGCAAC
TAAAGATACAGGTTAAGGGTAATTGAAGAAATCCAGTGAAGGGAGTGGCG
CCCTGGAAAACAGCTAGAGAGAAGAGGAGTCTTCGGTTCGCCCTGGACTA
CGGTCGCAGACTTACTTACTTTACTTTATGATATTAATTGCATTTCTTCT
ATTTTTTCAGCTCGTGCGCCATCACCTTTGCCGGCACCGAAAAGTCCAAC
TTCTCCAGCTTTCAAAATGACATTGGCCAAGGGGGAAAGTCCTTTTGCAG
GTATTAAAACAAACTTTTGTTCGAAGCTCTTTAGATAGAAGGACTGAAAC
TAGGCTACGTCATATCTTCCTTCGTTTCGAGCGTAAAACTCCTATGCGCA
CTGCTCTTGTTTTGAATATTATACACCATAGACAGTTCCAGCCTTTTTAG
GTCTTCCTCCTTTACTCTCGAAACAAAGAATGGTATGACATAACCTAAAG
GAGGGATAGTTTTTGAAGAGCTTTATTTTAAGGAAGGTGGATAGTTAGTA
AAAGGAAAACAATTTGCAAAGAATGCCTTGACATTTATCGATATAACGGG
TGGGCTGGATAGCTCACTCGGTTGAGCAGTTGCTCTAGTAATGCGAAAGA
CATAAGTTCGAATTTTACTTCAGTCCTCAAACAGTTAGTTTTTTATCCTG
AGGCGTGTTGGTACAATATGTTGACACTCTCCATAAAAAAAGACGTCAAT
ATCGCCATTGACAATTCAAAGGTCCAATCTCAAAATTATTGCCTGAGAAA
ACTAAGAATTTTTCTGTTTGTCTGAGCATAAACTTTGAGGAGATTGACCC
CCTGTTTCATGTAGAATGGACCCTCCCCATTATTATCCAAAACCTCAAAT
TTAAGGTTAGCTAGACAGAAAGATAAACTCTTAGCTTTCTCAGACACTAA
TTTTGTGATTGGCCCTTTTGATTTATCAACGGCGATATATAGTCAATCTT
TTTCCATTTCATTACAGCGGGCGCTGAATCGAACGTTCTAATGGCGAGTC
TTAAAAACACCATCGAAGGTGATCGAATGACCCTGGGTTTACGACAAACA
CGTGGTATGGCTGCTGGCTCCCATTCTCCCAGCATGCAACGCATGAAAAC
AGCTTTCCATGAGGATGATAAAAGTAAGTTCGAATTTTTTTTATGTTTCT
TTTTTAGAAGAAAACAAATCAAAAAGCTGGATTTATGCATGGTTATCAGT
AAACTTGTTTCTTAATATATCGAAGTACGGTTGACTCTAAGCTAAAACAA
ACTTTTATTCTATTCGAATTTTTCGTTACCTTTCAAGAAGACGTAAAATA
CTTTCTAGAATAAAAGTTTGGGATAGTTCAAATCTCTCCGTAACTCGAAC
AAATTAGATTCGCCTTTCGAATTCGAATTAGAGAGAGTCAACTTTAGTTC
TCTTTAAGCCCGTCAATGTAGAGATATATTTCAGTTTAAGAAAACCCTAC
GAAATACTTTAAATTAAAGGTTTTGTTTTTACATAAGTGTTCCCGTTTCA
TATCAGACACATATATCATATCGGGACAGTGTCTTCCTATTGCTATATCA
TGCTGATATAAGCAAAAAAATGTTTTTCTTTTCCTTTTTCTGACTAATCT
TGCTCCACATTCTTGTCAATCCAATATGAAAAAGCTTCTAAATTAAAATT
GATGAGTAAGCAAACGATATCATTCTTATTTAAAATCAAAACCTTTAAGA
TAGCTTTTATACGATAATAGTGTGCACGAGTTTTGTATGTTTCACCCAAT
TTTCCAATCAATAAAGCATATGTATAATTTTCAACAGGGAATAACATAAC
ACTACGAAATGATGGATACTGTAACGTACTCCCTCCTGATCAGTCCTCTT
TTCCTGTTGCTATGGCTACCAACTCGAATTATAACTCGGTCCAGGTTGAA
AATCCGAATAACTCAACTCAGGGCTATCACAGACAACCTATTAACTCGGC
CCAACAAGAGTACAATAACTCGTCTCAAGCACATTATAGACAATTGTCTT
TTGAAAAACAGCAAAGTAACTCGTTAACTCATAAAATGAACTCGGTACCG
AGTTACCAACGCGAATTAGCCGAAGCACATGCTAACTACCATCGACCACC
AACCAGTCCTGGCCTTAGCCATCAGAGACAATCGAGTAACCCGGCTTTAA
GTTATAATCGACAACCGAGTAACTCGGCTTCAAATCATCAGCGGAGTAAC
TCAAGTCCGAGTTATCAATACTATCGTGAACCGAGTAACTCGACAACAAT
ATCCCAAACTCAAAGATCGAAATCAGTCACAGCTCAGCAAGCACTTTCTC
TAGCGGAACAAATTCTAAATGCACATAGTAGTAAAATGCAAAATAGTAAG
TGTAAACGCACACTTAACAATATGGTTATAAAATGTAAACTGCACCTTAA
GTATATTTTTTTCCTTTTTACATAAATTGCACACGATATTTCTTTTAAAT
TCTTTCAATTTTCTAAATTGCACCAAATTCTTAAAACCAATAATCACGTG
GGATTGAAATTGAAAATGACGAGACCAAATTAAGTTTTGTATTCGTGTCA
ATAATCCGGTTCTATGGTCCAGGCCCCTTCCAATACTGTAAATAATATGA
TTTCGGTTTTCCTTAACATTTTAATTTTTCATTCTGTTTTTCTTTTTGCT
TCAGGTCCTTCAGCTTCGCGAAAAACAAGCTCAAACTCTGCTCCTGTTGG
TATGATTGACATACTTTTTTCATTTGATATTTTCCCCGGCGTGGGGGGGA
CTCGATTCTCCCAAAGTGCACTGTAAAGGTAGATTTTCGGCCAAATTTCC
AAAAAAAAATTTCTGTACTGCACGATTTCAAAGGCCTAATTTTGAAATTT
TGGGCCGCACCTATGATCGTTTTTGAATCAAGTGCCTAATTAATTTACTC
GTCTCAGCCTAGAAGTTCAGGTTAAAAGTGTTGGAACATGTTAGGATCGT
CAAAACGTTTGAACATCTTCTTGAATAAGAACTTTATAGCGTACAGACGA
TAAAACTCAATAGTACCTTTGGCAACTTCCACGGAAAACCCTTTATAGAC
CAAAGTGAAGCTCGATATATTTTCTAAGTATTTCTTCAGTTTGTTACAGT
GCTCGATACATAAGTAGAGCGATATCAGTCAGGAAGAAAAGACACTTTTT
TTATTCTGCTACTGGCAGTTTCATGCCACTTTGGTGACATCTTCAGGCAA
TAGTTTCGCGCCAAAGTGGCATAAAACTGCCAATAGCAGAATAAAAGAGT
GTTTTTTCTTCCTGACTTTTTCAAAATATTGACACCCCCTATTAAGGGCT
TAGCGGCGTTTTTCATTTACCCTCCCTGTGCCATCTCAATCTTAATTAAA
TGAAGTCATTCTTCTTGTATTTTCAGGAGACGAGCTGTAACATTATTTTC
CTTAAAGAATCTTTCAAAATCTAATTGTACATACTCTTTTTTATTTCATA
TTTTTGATATTTTTTTCGTACAGATTTTTTTCGGTAAATTATATTGTTTT
TGTTTTAACCAACTTTACCTGCCAAACCCTCAAGCTATTTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038219XLOC_038219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060875-exon-scaffold_349-1575043694:668894..668976TCONS_00060875-exon-scaffold_349-1575043694:668894..668976Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1575043694:667688..667843TCONS_00060875-exon-scaffold_349-1575043694:667688..667843Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1575043694:664627..664716TCONS_00060875-exon-scaffold_349-1575043694:664627..664716Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1575043694:663754..663909TCONS_00060875-exon-scaffold_349-1575043694:663754..663909Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1575043694:662178..662222TCONS_00060875-exon-scaffold_349-1575043694:662178..662222Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1575043694:661333..661500TCONS_00060875-exon-scaffold_349-1575043694:661333..661500Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1510915933:668894..668976TCONS_00060875-exon-scaffold_349-1510915933:668894..668976Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1510915933:667688..667843TCONS_00060875-exon-scaffold_349-1510915933:667688..667843Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1510915933:664627..664716TCONS_00060875-exon-scaffold_349-1510915933:664627..664716Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1510915933:663754..663909TCONS_00060875-exon-scaffold_349-1510915933:663754..663909Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1510915933:662178..662222TCONS_00060875-exon-scaffold_349-1510915933:662178..662222Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1510915933:661333..661500TCONS_00060875-exon-scaffold_349-1510915933:661333..661500Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1491911889:668894..668976TCONS_00060875-exon-scaffold_349-1491911889:668894..668976Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1491911889:667688..667843TCONS_00060875-exon-scaffold_349-1491911889:667688..667843Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1491911889:664627..664716TCONS_00060875-exon-scaffold_349-1491911889:664627..664716Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1491911889:663754..663909TCONS_00060875-exon-scaffold_349-1491911889:663754..663909Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1491911889:662178..662222TCONS_00060875-exon-scaffold_349-1491911889:662178..662222Clytia hemisphaericaexon
TCONS_00060875-exon-scaffold_349-1491911889:661333..661500TCONS_00060875-exon-scaffold_349-1491911889:661333..661500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:661333..668976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0292409	0.579473	0	0	0.446207	0	0.223607	0.66688	0.651719	0.33139	0	0	1.7759	1.80012	0.335708	0	28.3388	33.4919	0.654904	1.46791	34.1847	36.8879	11.6456	12.3043	16.9749	17.0881	27.2665	39.9697	3.47664	5.76004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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