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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060867 ID=TCONS_00060867|Name=TCONS_00060867|organism=Clytia hemisphaerica|type=transcript|length=4087bpRun BLAST on NCBI transcript from alignment at scaffold_349:639003..672167- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060867 ID=TCONS_00060867|Name=TCONS_00060867|organism=Clytia hemisphaerica|type=transcript|length=33165bp|location=Sequence derived from alignment at scaffold_349:639003..672167- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060867 vs. Swiss-Prot (Human)
Match: LDB3 (LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 2.829e-38 Identity = 72/171 (42.11%), Postives = 107/171 (62.57%), Query Frame = 1
Query: 1150 CSACDQPLDGPFVSAIGKTWHPDHFCCSSCQMSLQNQAFVEENNKLFCEKCYNSYYAPKXXXXXXXXXXXXXXXLGKSWHPDHFVCTFCNRGFGTDGYLVDSGKPYCEKCFEDLFSVKCGKCMRAITGGEKYVEALNKNWHSGCFTCNQCNARLEGNSFFVSRGMPYCGQH 1662
C C+ + GPF+ A+G++WHP+ F C+ C+ SL + FVEE N ++CE+CY ++AP CA CN I+G ++AL ++WH FVC C + FG + ++ G+PYCEK + +LFS KC C + G+K++EAL WH CF C C+ LEG F+ + P C +H
Sbjct: 551 CGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDRPLCKKH 721 The following BLAST results are available for this feature:
BLAST of TCONS_00060867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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