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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060854 ID=TCONS_00060854|Name=TCONS_00060854|organism=Clytia hemisphaerica|type=transcript|length=2843bp
tttggttTTAACTGTGCTATGAGAGAAAGTCAAAATCACCAAAAGTTAAA
CAATGACAGTGGATTTTGATGAGCGGACATGTGGGTGAAACAACTGTCGT
CACCAGTCCTCGTCTTCATTTTCATCCTCCTCTTTATCCAAAATAATCAT
GgGTCAGAGGTGGACTCCGAAGAAGAGGCTGCTTCATTTCTTCTCCAGAA
ATCACTGATCAAAGCACGAATGAAAATCAACAGACATGTTATCCATAGAC
GACAAGCGTTATATCATCATTTTGTTGAACTGGAGGACAACTTTTTCGAG
GAAAACGATGCAGACTCTGATAATGATGCGGATGGCGACGGTCGTGATGT
AGACCAAGAGGAAAACATTAGACTAGAAACAAGGAATCTTACATCTGATG
CCATATCGGATTCCACGAAAAACGAATTCGAAAATCCTTTCGATGACGAA
GATATAGAAGAATCAGGAGCTCATAGACCATCAGATGATCCCAATGTAGC
CTACACAACATTGACAAGACAGAACGATGATAAAAGTATTGAAACAGGTT
TAAAGGATGGACTGCAGGCTAAGGTACAACACCCTGTTCTAAAGAGAAAC
CATACAACAAACAATACGAAACGTCATCACAAAAATAATAACCAATCAAC
AACTGTTATAAAAGACTTATCCACAAAACAGTTTATTCAGTCGAAAACGT
ATGAACCACGACTACGTGAAAATAGAAGTATTCAAAATGAACATGATCct
tttggaaaattgaaaaggAACACGACTTTTCCTAGATTCTTACCATCAGA
TAGAAGAAGATCGAACTCTACGCTTGGCACAGGCATCTCTGATAGCGAAa
actcaaaaacaacaaaaatacaGGAATCAAAGCCAATGCTCCCTATAAAT
atcaatgttaaaaaagactttaaatcaaataaaacaCATGGAGACATAGA
CACAGACATAGATAATGAACAAGACTTACGCTTAACTAATAGACTGAAAT
CGAACGCGCAACTTCGCACACGCATAAATGCTATAAAAGATTCACACTTG
ACAAACCGATCGAAATCGAACGGGCAACAGCGTACAGACATCGGTGTTTT
AAAAGACCCACACTTAACTAACCGATCGAAATCGAATGCGCAACTGCGTA
CAGGTATAGACGATAAACAAGTCTCACGGTTAACTAATACACTAAAATCG
AAAGCGCAACTGCGTACAGACATAAATGCTATAAACGGCCCAGTATTCGG
CGACGAAATCATTCACCAAACATCAATTGCGCATGCTCCATGTCAACCAC
AACCAGGATGTAACCTCATGCTCATCCCAAACACCGTCCCTTCACATAAG
AACGAAGAAAAGTATTTACTATCTCAGGCGCATGCGCTTAAACAAAATGC
TCAACTCATGTCCATGCAAGCGGATATCCTAGAACACGAGGTAACTTCCA
TCAAGGGCGGAAGCGGACAACACGTAATGACAGTTGAAGGCGGCCACCCT
TTACAAGGTTTACACGCCCATAATATGCGTTTACacaatgattattttaa
tgttgaTAAACCGGTTCATTTGCCTTCCGGGCACCACGGGCACGGTCCGG
AACACGGTGGTACTGAAGACCTGATTCATAATGCTGAACATTATAAGGAA
GGAGATTCTCATGACGGAGGTGGTAGCCTCAAGGTGGAAGGCGGGAGCAA
GATACAGTCTATAGGGACTGGGTATCCGCAATATAATTTACCAACCAAAC
CAATGGGTGGAGGGGGAGCTTCAGGTGCGGCAGGTGCTAGCAGTAGTGGT
GGTTTATTCGAATTCGTTAGACCTTTGCCACCTGCGGCAGGACCCAACCC
GTATGAAGTATTGACGTCCGCTACCCTTGGTCAAGACTACCCAGGGGTGT
CTCAGAAACAATCAGCTTCAGCCATGGGTTTCAACGAAGCTGGCGGAGCT
GGTATGCAATAtgaagtgctgacgtcagctaATCTTGGTAAAGAACTACC
TGGTGTAACGCAGGAGCAATCTGCGGCAGCCATGGGTTTTAATAATGGCG
GTGGAGGTGCTATGGTGATTTCGAAACCGATGAAATTTGTTGTTTCTTTG
AAAGGACTTAAAGTCAAAGAACAGAAAGCTCAGAAGCTGATCAATTTCAC
TGTAAAGAGAGATGGGGGTAAAAGTGACTAGGCTACATTCGAAacgtaaa
ataaataaaacgcGAAAAAAGAGGGAAAAGCGCCGTAAAAGACGAGAAAG
ACGTAAATTGAAGATTCATAACGGACGTTAAATTGATTGACATAAAATGg
cttaagaaaaaataaaaaaagaaaagttgaagTCTCGCAGTGTAATTGTA
ATTGTGTCCACTAAAATATCATTGGACGTTATTGATATATTTTGTGCCAC
CCAAGTAGGCCCCAaatggacttttccagaaaaaaaacgtataccccCTG
CTATTCCAAGAAGGTAAGGTTTTATAtatggcggaattccatagggagat
gcAAATGGtagtagctttttaaatcctactaaaactcacaattccagagg
ggtttaaacctgaaattgcctggaattccagagggttacagcatttccag
ccacagaggTATGGACCTCCTCTACAGggggtatacgttttttttttctg
gaatagcccaatcttTTTGGGAAAACTTATGAAAAGAAAGCAAACAATCG
TGTTGGATGATAAATTAAAGTCGTGTTCATGAAAAGATAGATAGATAATT
GCAAATAAATAGACTTCTCTTCACTCTTTGTCTTTACTTTGGAGCCGGAC
AACGACCAGGGTCTCTTCTATCTCATCATAGCTGCGAATTCTA Run BLAST on NCBI transcript from alignment at scaffold_349:472566..478161- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060854 ID=TCONS_00060854|Name=TCONS_00060854|organism=Clytia hemisphaerica|type=transcript|length=5596bp|location=Sequence derived from alignment at scaffold_349:472566..478161- (Clytia hemisphaerica)
TTTGGTTTTAACTGTGCTATGAGAGAAAGGTTGGTCTGCAAAACTGATTT
TTTATATTGTAGTGAACTACACGCTAAGGGGGTACATGTTTTAATTAATA
ATTTAGAGTATTGTATATCATGGTCAAAATATATTGAGATTTAAGTGCAT
TTCAACGTTTTTCATAATTTAAAGTTCGGGCGAGATTGCTATTTTAGGTT
ATTTTTAGCTTTCTTTCATTGAATATTTCAATTTTGGAGGGGTTCGGTGG
CTTCTAGGCTATATTCCAAGCCTTATTTGAGCAAATTTGAGCTTTTAAAT
CCTGAGATTCTGAAGTCTTAAAGTCTCATGTTAAAACTCAGAGTTAAAAC
TCTCTTACCAACTGTAGTTTAACGCACTTAAAAATCATTTGTGGTGTTTA
AAATTCCGCAGGAAAATCCCCTTTGTCTCAAATATTTTGTCCATGATTGA
AGATTATGTAAAAACTATTTTCTCTTGTGCTCTTCCAGTCAAAATCACCA
AAAGTTAAACAATGACAGTGGATTTTGATGAGCGGACATGTGGGTGAAAC
AACTGTCGTCACCAGTCCTCGTCTTCATTTTCATCCTCCTCTTTATCCAA
AATAATCATGGTAAGTCTAAAGGCTTGGGGACACGAGAAGTTTTTTCGCG
TTGATGCAATGCAACATGCTCTGTCCCACCAACCTGAAACGCTTTCTCGT
GTCTCCACCCCATTTTTCTTTTAATAACATTTGTGCTTCTCTAACTTTTG
TTCTAATCAGCGTGTCTTTTGGGTATTTTCCTTATTTTTTGTCCCGTGAG
CATGTTGCATTGGGCTCTTCCAGTAAATGTCCGTACATGGGGGGGGGGGT
GGAGGATATATTGTCCGGGGGTAGTGAAAAATCATCAAAATTTGCCTTGT
TCGGGGGTAAATTTTGCTCTGTCCGGGGGTAATTTGAGTTGTCCAGGGGG
TCAACTGATGCTTGTCTGGGAGGGGCAGGGGGCAAAAGTCACTTTGTCCG
GGGGTAAATCATTGAAAATTGTTCATAATCAAAATTTGCCTTGTTCGGGG
GTAAATTTTGCTCTGTCCGGGGGTAATTTGAGTTGTCCAGGGGGTCAACT
GATGCTTGTCTGGGAGGGGCAGGGGGCAAAAGTCACTTTGTCCGGGGGTA
AATCATTGAAAATTGTTCATAATCAAAATTTGCCTTGTTCGGGGGTAAAT
TTTGCTCTGTCCGGGGGTAATTTGAGTTGTCCAGGGGGTCAACTGATGCT
TGTCTGGGAGGGGCAGGGGGCAAAAGTCACTTTGTCCGGGGGTAAATCAT
TGAAAATTGTTATATCCTCTAACCCCCATATTCAAATTCTTTCTAAGCCT
ATTATACAATTTTTTGGTAAAAGTCCATCTTAGCCTAGGGGGCCTTTATT
GAATTTATTCATATGAATTCCTTGATCCTATTTGCTTTTCCATGTAAGAG
GCAATCAAGGAGTTAGACGATTTTTTATTAGGAGTAAATCAAAATTGAAA
ATTCCTTTCACCTAAGCTTTTTTTTCAAAAATGAGGTAAAATTTCGTTAT
GTTGAGGGTTCCTTGAAAGATTCCCGAAGATAATATTGTCTTCAAAATTC
ATCTGCATGTTCTTTCTTACCTACTTTAATGGGATAAATTTTCGCGGGGA
TTAAATTTCGCGGTTGAGCTCATCCGCGAACTTTTAAGATTTCGCGGGGA
TTAATTTTCGCGGATGAGGGATTTCCTGATTTTTCGCGGGGATTTAATTT
CGCGGATTGGGGTACAAATTAAAATTTTTGAAAAGAGTCAAAACATTGAA
ATAAAATTTTTCCAGGAAATTAAGAATTTTTTTTTCAAGTAATAAGAGGG
TGTTTTGGAATAGGGCGAGGTGATATGTATTACAACTATCAAAAGTTGAA
TTTGAACTTCCATGGTGCGGAGCTAAATTTTCACAGCCTATTTGGGAAAA
AATCTTACATATCCTTTTAAATGTTTAATTTCAAGTCAGTTGGATTACCC
TCTTGCATTGAAAAGCTTTTAACAATAAGCGATCACTTTAGATAAAAATT
TTTCCAATACCGCTTCCAAGTTTGTAAATTTGTGAAGAAAATTTTGAGGA
AAACGATTTTTTGCTAACAAGCATATCGAGGATTTGACCTTTTTCGAGGG
TTGCCTCATGTAGAAAAAAATAAATAAAAAACGATAAAAATAGAAATTTC
GCGGATTGCAAAAAAAATTCAAATTTTTCGCGGGAACTAATTTTCGCGGA
TGGGCCTTTCTCAAATTTCCAATGGGAATTATTTTCGCGGATGACACCCA
AATCCGCGAAATCCGCGAAAATTAATCCCCGCGAAAATTTATCCCATTAA
AGTAATAGCCGATGGGGGGATTGGAATAAGCAGGGGTTGGAAAAATATAC
AAAACTTAATAAGCGAGGGGGGGGTTGGAATAAAAATGTCCTGGGTAGAA
AATTTTTAAAAAGGAGGTTAATACTGCAGATTTAAAACAAAAGAGGGAAC
TTTCAAAAACATTTTCCCAAAAAAAAATAAGCGGGGGGTTGGAATAAGAA
TGTCCTGGGTGGAAAATTTTTGAAAAATTTATTAGCGGAGGGGGGAGGGG
CTATTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTATTAGGT
ACCCGAGAGTAAGAATTGTTTGAAATTTGGTTGGATTTTCTCAATGTAAA
TAAAAATGTTAATATAAATTAAAAGTTTGCACAATTTGAAAATGTTTTTT
TGCATTTTCCAGGGTCAGAGGTGGACTCCGAAGAAGAGGCTGCTTCATTT
CTTCTCCAGAAATCACTGATCAAAGCACGAATGAAAATCAACAGACATGT
TATCCATAGACGACAAGCGTTATATCATCATTTTGTTGAACTGGAGGACA
ACTTTTTCGAGGAAAACGATGCAGACTCTGATAATGATGCGGATGGCGAC
GGTCGTGATGTAGACCAAGAGGAAAACATTAGACTAGAAACAAGGAATNT
GAGGAAAACGATGCAGACCCTGATAATGATGAGGATGGCGACGGTTGTGA
TGTAGACCGAGAGGAAAACATTAGACTAGAAACAAGGAATCTTACATCTG
ATGCCATATCGGATTCCACGAAAAACGAATTCGAAAATCCTTTCGATGAC
GAAGATATAGAAGAATCAGGAGCTCATAGACCATCAGATGATCCCAATGT
AGCCTACACAACATTGACAAGACAGAACGATGATAAAAGTATTGAAACAG
GTTTAAAGGATGGACTGCAGGCTAAGGTACAACACCCTGTTCTAAAGAGA
AACCATACAACAAACAATACGAAACGTCATCACAAAAATAATAACCAATC
AACAACTGTTATAAAAGACTTATCCACAAAACAGTTTATTCAGTCGAAAA
CGTATGAACCACGACTACGTGAAAATAGAAGTATTCAAAATGAACATGAT
CCTTTTGGAAAATTGAAAAGGAACACGACTTTTCCTAGATTCTTACCATC
AGATAGAAGAAGATCGAACTCTACGCTTGGCACAGGCATCTCTGATAGCG
AAAACTCAAAAACAACAAAAATACAGGAATCAAAGCCAATGCTCCCTATA
AATATCAATGTTAAAAAAGACTTTAAATCAAATAAAACACATGGAGACAT
AGACACAGACATAGATAATGAACAAGACTTACGCTTAACTAATAGACTGA
AATCGAACGCGCAACTTCGCACACGCATAAATGCTATAAAAGATTCACAC
TTGACAAACCGATCGAAATCGAACGGGCAACAGCGTACAGACATCGGTGT
TTTAAAAGACCCACACTTAACTAACCGATCGAAATCGAATGCGCAACTGC
GTACAGGTATAGACGATAAACAAGTCTCACGGTTAACTAATACACTAAAA
TCGAAAGCGCAACTGCGTACAGACATAAATGCTATAAACGGCCCAGTATT
CGGCGACGAAATCATTCACCAAACATCAATTGCGCATGCTCCATGTCAAC
CACAACCAGGATGTAACCTCATGCTCATCCCAAACACCGTCCCTTCACAT
AAGAACGAAGAAAAGTATTTACTATCTCAGGCGCATGCGCTTAAACAAAA
TGCTCAACTCATGTCCATGCAAGCGGATATCCTAGAACACGAGGTAACTT
CCATCAAGGGCGGAAGCGGACAACACGTAATGACAGTTGAAGGCGGCCAC
CCTTTACAAGGTTTACACGCCCATAATATGCGTTTACACAATGATTATTT
TAATGTTGATAAACCGGTTCATTTGCCTTCCGGGCACCACGGGCACGGTC
CGGAACACGGTGGTACTGAAGACCTGATTCATAATGCTGAACATTATAAG
GAAGGAGATTCTCATGACGGAGGTGGTAGCCTCAAGGTGGAAGGCGGGAG
CAAGATACAGTCTATAGGGACTGGGTATCCGCAATATAATTTACCAACCA
AACCAATGGGTGGAGGGGGAGCTTCAGGTGCGGCAGGTGCTAGCAGTAGT
GGTGGTTTATTCGAATTCGTTAGACCTTTGCCACCTGCGGCAGGACCCAA
CCCGTATGAAGTATTGACGTCCGCTACCCTTGGTCAAGACTACCCAGGGG
TGTCTCAGAAACAATCAGCTTCAGCCATGGGTTTCAACGAAGCTGGCGGA
GCTGGTATGCAATATGAAGTGCTGACGTCAGCTAATCTTGGTAAAGAACT
ACCTGGTGTAACGCAGGAGCAATCTGCGGCAGCCATGGGTTTTAATAATG
GCGGTGGAGGTGCTATGGTGATTTCGAAACCGATGAAATTTGTTGTTTCT
TTGAAAGGACTTAAAGTCAAAGAACAGAAAGCTCAGAAGCTGATCAATTT
CACTGTAAAGAGAGATGGGGGTAAAAGTGACTAGGCTACATTCGAAACGT
AAAATAAATAAAACGCGAAAAAAGAGGGAAAAGCGCCGTAAAAGACGAGA
AAGACGTAAATTGAAGATTCATAACGGACGTTAAATTGATTGACATAAAA
TGGCTTAAGAAAAAATAAAAAAAGAAAAGTTGAAGTCTCGCAGTGTAATT
GTAATTGTGTCCACTAAAATATCATTGGACGTTATTGATATATTTTGTGC
CACCCAAGTAGGCCCCAAATGGACTTTTCCAGAAAAAAAACGTATACCCC
CTGCTATTCCAAGAAGGTAAGGTTTTATATATGGCGGAATTCCATAGGGA
GATGCAAATGGTAGTAGCTTTTTAAATCCTACTAAAACTCACAATTCCAG
AGGGGTTTAAACCTGAAATTGCCTGGAATTCCAGAGGGTTACAGCATTTC
CAGCCACAGAGGTATGGACCTCCTCTACAGGGGGTATACGTTTTTTTTTT
CTGGAATAGCCCAATCTTTTTGGGAAAACTTATGAAAAGAAAGCAAACAA
TCGTGTTGGATGATAAATTAAAGTCGTGTTCATGAAAAGATAGATAGATA
ATTGCAAATAAATAGACTTCTCTTCACTCTTTGTCTTTACTTTGGAGCCG
GACAACGACCAGGGTCTCTTCTATCTCATCATAGCTGCGAATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060854-exon-scaffold_349-1575043694:478133..478161 | TCONS_00060854-exon-scaffold_349-1575043694:478133..478161 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1575043694:477552..477673 | TCONS_00060854-exon-scaffold_349-1575043694:477552..477673 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1575043694:475135..475349 | TCONS_00060854-exon-scaffold_349-1575043694:475135..475349 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1575043694:472566..475042 | TCONS_00060854-exon-scaffold_349-1575043694:472566..475042 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1510915933:478133..478161 | TCONS_00060854-exon-scaffold_349-1510915933:478133..478161 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1510915933:477552..477673 | TCONS_00060854-exon-scaffold_349-1510915933:477552..477673 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1510915933:475135..475349 | TCONS_00060854-exon-scaffold_349-1510915933:475135..475349 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1510915933:472566..475042 | TCONS_00060854-exon-scaffold_349-1510915933:472566..475042 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1491911889:478133..478161 | TCONS_00060854-exon-scaffold_349-1491911889:478133..478161 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1491911889:477552..477673 | TCONS_00060854-exon-scaffold_349-1491911889:477552..477673 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1491911889:475135..475349 | TCONS_00060854-exon-scaffold_349-1491911889:475135..475349 | Clytia hemisphaerica | exon |
| TCONS_00060854-exon-scaffold_349-1491911889:472566..475042 | TCONS_00060854-exon-scaffold_349-1491911889:472566..475042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:472566..478161 - |
Blast
The following BLAST results are available for this feature:
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