TCONS_00060854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060854
Unique NameTCONS_00060854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060854 ID=TCONS_00060854|Name=TCONS_00060854|organism=Clytia hemisphaerica|type=transcript|length=2843bp
tttggttTTAACTGTGCTATGAGAGAAAGTCAAAATCACCAAAAGTTAAA
CAATGACAGTGGATTTTGATGAGCGGACATGTGGGTGAAACAACTGTCGT
CACCAGTCCTCGTCTTCATTTTCATCCTCCTCTTTATCCAAAATAATCAT
GgGTCAGAGGTGGACTCCGAAGAAGAGGCTGCTTCATTTCTTCTCCAGAA
ATCACTGATCAAAGCACGAATGAAAATCAACAGACATGTTATCCATAGAC
GACAAGCGTTATATCATCATTTTGTTGAACTGGAGGACAACTTTTTCGAG
GAAAACGATGCAGACTCTGATAATGATGCGGATGGCGACGGTCGTGATGT
AGACCAAGAGGAAAACATTAGACTAGAAACAAGGAATCTTACATCTGATG
CCATATCGGATTCCACGAAAAACGAATTCGAAAATCCTTTCGATGACGAA
GATATAGAAGAATCAGGAGCTCATAGACCATCAGATGATCCCAATGTAGC
CTACACAACATTGACAAGACAGAACGATGATAAAAGTATTGAAACAGGTT
TAAAGGATGGACTGCAGGCTAAGGTACAACACCCTGTTCTAAAGAGAAAC
CATACAACAAACAATACGAAACGTCATCACAAAAATAATAACCAATCAAC
AACTGTTATAAAAGACTTATCCACAAAACAGTTTATTCAGTCGAAAACGT
ATGAACCACGACTACGTGAAAATAGAAGTATTCAAAATGAACATGATCct
tttggaaaattgaaaaggAACACGACTTTTCCTAGATTCTTACCATCAGA
TAGAAGAAGATCGAACTCTACGCTTGGCACAGGCATCTCTGATAGCGAAa
actcaaaaacaacaaaaatacaGGAATCAAAGCCAATGCTCCCTATAAAT
atcaatgttaaaaaagactttaaatcaaataaaacaCATGGAGACATAGA
CACAGACATAGATAATGAACAAGACTTACGCTTAACTAATAGACTGAAAT
CGAACGCGCAACTTCGCACACGCATAAATGCTATAAAAGATTCACACTTG
ACAAACCGATCGAAATCGAACGGGCAACAGCGTACAGACATCGGTGTTTT
AAAAGACCCACACTTAACTAACCGATCGAAATCGAATGCGCAACTGCGTA
CAGGTATAGACGATAAACAAGTCTCACGGTTAACTAATACACTAAAATCG
AAAGCGCAACTGCGTACAGACATAAATGCTATAAACGGCCCAGTATTCGG
CGACGAAATCATTCACCAAACATCAATTGCGCATGCTCCATGTCAACCAC
AACCAGGATGTAACCTCATGCTCATCCCAAACACCGTCCCTTCACATAAG
AACGAAGAAAAGTATTTACTATCTCAGGCGCATGCGCTTAAACAAAATGC
TCAACTCATGTCCATGCAAGCGGATATCCTAGAACACGAGGTAACTTCCA
TCAAGGGCGGAAGCGGACAACACGTAATGACAGTTGAAGGCGGCCACCCT
TTACAAGGTTTACACGCCCATAATATGCGTTTACacaatgattattttaa
tgttgaTAAACCGGTTCATTTGCCTTCCGGGCACCACGGGCACGGTCCGG
AACACGGTGGTACTGAAGACCTGATTCATAATGCTGAACATTATAAGGAA
GGAGATTCTCATGACGGAGGTGGTAGCCTCAAGGTGGAAGGCGGGAGCAA
GATACAGTCTATAGGGACTGGGTATCCGCAATATAATTTACCAACCAAAC
CAATGGGTGGAGGGGGAGCTTCAGGTGCGGCAGGTGCTAGCAGTAGTGGT
GGTTTATTCGAATTCGTTAGACCTTTGCCACCTGCGGCAGGACCCAACCC
GTATGAAGTATTGACGTCCGCTACCCTTGGTCAAGACTACCCAGGGGTGT
CTCAGAAACAATCAGCTTCAGCCATGGGTTTCAACGAAGCTGGCGGAGCT
GGTATGCAATAtgaagtgctgacgtcagctaATCTTGGTAAAGAACTACC
TGGTGTAACGCAGGAGCAATCTGCGGCAGCCATGGGTTTTAATAATGGCG
GTGGAGGTGCTATGGTGATTTCGAAACCGATGAAATTTGTTGTTTCTTTG
AAAGGACTTAAAGTCAAAGAACAGAAAGCTCAGAAGCTGATCAATTTCAC
TGTAAAGAGAGATGGGGGTAAAAGTGACTAGGCTACATTCGAAacgtaaa
ataaataaaacgcGAAAAAAGAGGGAAAAGCGCCGTAAAAGACGAGAAAG
ACGTAAATTGAAGATTCATAACGGACGTTAAATTGATTGACATAAAATGg
cttaagaaaaaataaaaaaagaaaagttgaagTCTCGCAGTGTAATTGTA
ATTGTGTCCACTAAAATATCATTGGACGTTATTGATATATTTTGTGCCAC
CCAAGTAGGCCCCAaatggacttttccagaaaaaaaacgtataccccCTG
CTATTCCAAGAAGGTAAGGTTTTATAtatggcggaattccatagggagat
gcAAATGGtagtagctttttaaatcctactaaaactcacaattccagagg
ggtttaaacctgaaattgcctggaattccagagggttacagcatttccag
ccacagaggTATGGACCTCCTCTACAGggggtatacgttttttttttctg
gaatagcccaatcttTTTGGGAAAACTTATGAAAAGAAAGCAAACAATCG
TGTTGGATGATAAATTAAAGTCGTGTTCATGAAAAGATAGATAGATAATT
GCAAATAAATAGACTTCTCTTCACTCTTTGTCTTTACTTTGGAGCCGGAC
AACGACCAGGGTCTCTTCTATCTCATCATAGCTGCGAATTCTA
Run BLAST on NCBI

transcript from alignment at scaffold_349:472566..478161-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060854 ID=TCONS_00060854|Name=TCONS_00060854|organism=Clytia hemisphaerica|type=transcript|length=5596bp|location=Sequence derived from alignment at scaffold_349:472566..478161- (Clytia hemisphaerica)
TTTGGTTTTAACTGTGCTATGAGAGAAAGGTTGGTCTGCAAAACTGATTT TTTATATTGTAGTGAACTACACGCTAAGGGGGTACATGTTTTAATTAATA ATTTAGAGTATTGTATATCATGGTCAAAATATATTGAGATTTAAGTGCAT TTCAACGTTTTTCATAATTTAAAGTTCGGGCGAGATTGCTATTTTAGGTT ATTTTTAGCTTTCTTTCATTGAATATTTCAATTTTGGAGGGGTTCGGTGG CTTCTAGGCTATATTCCAAGCCTTATTTGAGCAAATTTGAGCTTTTAAAT CCTGAGATTCTGAAGTCTTAAAGTCTCATGTTAAAACTCAGAGTTAAAAC TCTCTTACCAACTGTAGTTTAACGCACTTAAAAATCATTTGTGGTGTTTA AAATTCCGCAGGAAAATCCCCTTTGTCTCAAATATTTTGTCCATGATTGA AGATTATGTAAAAACTATTTTCTCTTGTGCTCTTCCAGTCAAAATCACCA AAAGTTAAACAATGACAGTGGATTTTGATGAGCGGACATGTGGGTGAAAC AACTGTCGTCACCAGTCCTCGTCTTCATTTTCATCCTCCTCTTTATCCAA AATAATCATGGTAAGTCTAAAGGCTTGGGGACACGAGAAGTTTTTTCGCG TTGATGCAATGCAACATGCTCTGTCCCACCAACCTGAAACGCTTTCTCGT GTCTCCACCCCATTTTTCTTTTAATAACATTTGTGCTTCTCTAACTTTTG TTCTAATCAGCGTGTCTTTTGGGTATTTTCCTTATTTTTTGTCCCGTGAG CATGTTGCATTGGGCTCTTCCAGTAAATGTCCGTACATGGGGGGGGGGGT GGAGGATATATTGTCCGGGGGTAGTGAAAAATCATCAAAATTTGCCTTGT TCGGGGGTAAATTTTGCTCTGTCCGGGGGTAATTTGAGTTGTCCAGGGGG TCAACTGATGCTTGTCTGGGAGGGGCAGGGGGCAAAAGTCACTTTGTCCG GGGGTAAATCATTGAAAATTGTTCATAATCAAAATTTGCCTTGTTCGGGG GTAAATTTTGCTCTGTCCGGGGGTAATTTGAGTTGTCCAGGGGGTCAACT GATGCTTGTCTGGGAGGGGCAGGGGGCAAAAGTCACTTTGTCCGGGGGTA AATCATTGAAAATTGTTCATAATCAAAATTTGCCTTGTTCGGGGGTAAAT TTTGCTCTGTCCGGGGGTAATTTGAGTTGTCCAGGGGGTCAACTGATGCT TGTCTGGGAGGGGCAGGGGGCAAAAGTCACTTTGTCCGGGGGTAAATCAT TGAAAATTGTTATATCCTCTAACCCCCATATTCAAATTCTTTCTAAGCCT ATTATACAATTTTTTGGTAAAAGTCCATCTTAGCCTAGGGGGCCTTTATT GAATTTATTCATATGAATTCCTTGATCCTATTTGCTTTTCCATGTAAGAG GCAATCAAGGAGTTAGACGATTTTTTATTAGGAGTAAATCAAAATTGAAA ATTCCTTTCACCTAAGCTTTTTTTTCAAAAATGAGGTAAAATTTCGTTAT GTTGAGGGTTCCTTGAAAGATTCCCGAAGATAATATTGTCTTCAAAATTC ATCTGCATGTTCTTTCTTACCTACTTTAATGGGATAAATTTTCGCGGGGA TTAAATTTCGCGGTTGAGCTCATCCGCGAACTTTTAAGATTTCGCGGGGA TTAATTTTCGCGGATGAGGGATTTCCTGATTTTTCGCGGGGATTTAATTT CGCGGATTGGGGTACAAATTAAAATTTTTGAAAAGAGTCAAAACATTGAA ATAAAATTTTTCCAGGAAATTAAGAATTTTTTTTTCAAGTAATAAGAGGG TGTTTTGGAATAGGGCGAGGTGATATGTATTACAACTATCAAAAGTTGAA TTTGAACTTCCATGGTGCGGAGCTAAATTTTCACAGCCTATTTGGGAAAA AATCTTACATATCCTTTTAAATGTTTAATTTCAAGTCAGTTGGATTACCC TCTTGCATTGAAAAGCTTTTAACAATAAGCGATCACTTTAGATAAAAATT TTTCCAATACCGCTTCCAAGTTTGTAAATTTGTGAAGAAAATTTTGAGGA AAACGATTTTTTGCTAACAAGCATATCGAGGATTTGACCTTTTTCGAGGG TTGCCTCATGTAGAAAAAAATAAATAAAAAACGATAAAAATAGAAATTTC GCGGATTGCAAAAAAAATTCAAATTTTTCGCGGGAACTAATTTTCGCGGA TGGGCCTTTCTCAAATTTCCAATGGGAATTATTTTCGCGGATGACACCCA AATCCGCGAAATCCGCGAAAATTAATCCCCGCGAAAATTTATCCCATTAA AGTAATAGCCGATGGGGGGATTGGAATAAGCAGGGGTTGGAAAAATATAC AAAACTTAATAAGCGAGGGGGGGGTTGGAATAAAAATGTCCTGGGTAGAA AATTTTTAAAAAGGAGGTTAATACTGCAGATTTAAAACAAAAGAGGGAAC TTTCAAAAACATTTTCCCAAAAAAAAATAAGCGGGGGGTTGGAATAAGAA TGTCCTGGGTGGAAAATTTTTGAAAAATTTATTAGCGGAGGGGGGAGGGG CTATTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTATTAGGT ACCCGAGAGTAAGAATTGTTTGAAATTTGGTTGGATTTTCTCAATGTAAA TAAAAATGTTAATATAAATTAAAAGTTTGCACAATTTGAAAATGTTTTTT TGCATTTTCCAGGGTCAGAGGTGGACTCCGAAGAAGAGGCTGCTTCATTT CTTCTCCAGAAATCACTGATCAAAGCACGAATGAAAATCAACAGACATGT TATCCATAGACGACAAGCGTTATATCATCATTTTGTTGAACTGGAGGACA ACTTTTTCGAGGAAAACGATGCAGACTCTGATAATGATGCGGATGGCGAC GGTCGTGATGTAGACCAAGAGGAAAACATTAGACTAGAAACAAGGAATNT GAGGAAAACGATGCAGACCCTGATAATGATGAGGATGGCGACGGTTGTGA TGTAGACCGAGAGGAAAACATTAGACTAGAAACAAGGAATCTTACATCTG ATGCCATATCGGATTCCACGAAAAACGAATTCGAAAATCCTTTCGATGAC GAAGATATAGAAGAATCAGGAGCTCATAGACCATCAGATGATCCCAATGT AGCCTACACAACATTGACAAGACAGAACGATGATAAAAGTATTGAAACAG GTTTAAAGGATGGACTGCAGGCTAAGGTACAACACCCTGTTCTAAAGAGA AACCATACAACAAACAATACGAAACGTCATCACAAAAATAATAACCAATC AACAACTGTTATAAAAGACTTATCCACAAAACAGTTTATTCAGTCGAAAA CGTATGAACCACGACTACGTGAAAATAGAAGTATTCAAAATGAACATGAT CCTTTTGGAAAATTGAAAAGGAACACGACTTTTCCTAGATTCTTACCATC AGATAGAAGAAGATCGAACTCTACGCTTGGCACAGGCATCTCTGATAGCG AAAACTCAAAAACAACAAAAATACAGGAATCAAAGCCAATGCTCCCTATA AATATCAATGTTAAAAAAGACTTTAAATCAAATAAAACACATGGAGACAT AGACACAGACATAGATAATGAACAAGACTTACGCTTAACTAATAGACTGA AATCGAACGCGCAACTTCGCACACGCATAAATGCTATAAAAGATTCACAC TTGACAAACCGATCGAAATCGAACGGGCAACAGCGTACAGACATCGGTGT TTTAAAAGACCCACACTTAACTAACCGATCGAAATCGAATGCGCAACTGC GTACAGGTATAGACGATAAACAAGTCTCACGGTTAACTAATACACTAAAA TCGAAAGCGCAACTGCGTACAGACATAAATGCTATAAACGGCCCAGTATT CGGCGACGAAATCATTCACCAAACATCAATTGCGCATGCTCCATGTCAAC CACAACCAGGATGTAACCTCATGCTCATCCCAAACACCGTCCCTTCACAT AAGAACGAAGAAAAGTATTTACTATCTCAGGCGCATGCGCTTAAACAAAA TGCTCAACTCATGTCCATGCAAGCGGATATCCTAGAACACGAGGTAACTT CCATCAAGGGCGGAAGCGGACAACACGTAATGACAGTTGAAGGCGGCCAC CCTTTACAAGGTTTACACGCCCATAATATGCGTTTACACAATGATTATTT TAATGTTGATAAACCGGTTCATTTGCCTTCCGGGCACCACGGGCACGGTC CGGAACACGGTGGTACTGAAGACCTGATTCATAATGCTGAACATTATAAG GAAGGAGATTCTCATGACGGAGGTGGTAGCCTCAAGGTGGAAGGCGGGAG CAAGATACAGTCTATAGGGACTGGGTATCCGCAATATAATTTACCAACCA AACCAATGGGTGGAGGGGGAGCTTCAGGTGCGGCAGGTGCTAGCAGTAGT GGTGGTTTATTCGAATTCGTTAGACCTTTGCCACCTGCGGCAGGACCCAA CCCGTATGAAGTATTGACGTCCGCTACCCTTGGTCAAGACTACCCAGGGG TGTCTCAGAAACAATCAGCTTCAGCCATGGGTTTCAACGAAGCTGGCGGA GCTGGTATGCAATATGAAGTGCTGACGTCAGCTAATCTTGGTAAAGAACT ACCTGGTGTAACGCAGGAGCAATCTGCGGCAGCCATGGGTTTTAATAATG GCGGTGGAGGTGCTATGGTGATTTCGAAACCGATGAAATTTGTTGTTTCT TTGAAAGGACTTAAAGTCAAAGAACAGAAAGCTCAGAAGCTGATCAATTT CACTGTAAAGAGAGATGGGGGTAAAAGTGACTAGGCTACATTCGAAACGT AAAATAAATAAAACGCGAAAAAAGAGGGAAAAGCGCCGTAAAAGACGAGA AAGACGTAAATTGAAGATTCATAACGGACGTTAAATTGATTGACATAAAA TGGCTTAAGAAAAAATAAAAAAAGAAAAGTTGAAGTCTCGCAGTGTAATT GTAATTGTGTCCACTAAAATATCATTGGACGTTATTGATATATTTTGTGC CACCCAAGTAGGCCCCAAATGGACTTTTCCAGAAAAAAAACGTATACCCC CTGCTATTCCAAGAAGGTAAGGTTTTATATATGGCGGAATTCCATAGGGA GATGCAAATGGTAGTAGCTTTTTAAATCCTACTAAAACTCACAATTCCAG AGGGGTTTAAACCTGAAATTGCCTGGAATTCCAGAGGGTTACAGCATTTC CAGCCACAGAGGTATGGACCTCCTCTACAGGGGGTATACGTTTTTTTTTT CTGGAATAGCCCAATCTTTTTGGGAAAACTTATGAAAAGAAAGCAAACAA TCGTGTTGGATGATAAATTAAAGTCGTGTTCATGAAAAGATAGATAGATA ATTGCAAATAAATAGACTTCTCTTCACTCTTTGTCTTTACTTTGGAGCCG GACAACGACCAGGGTCTCTTCTATCTCATCATAGCTGCGAATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038216XLOC_038216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060854-exon-scaffold_349-1575043694:478133..478161TCONS_00060854-exon-scaffold_349-1575043694:478133..478161Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1575043694:477552..477673TCONS_00060854-exon-scaffold_349-1575043694:477552..477673Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1575043694:475135..475349TCONS_00060854-exon-scaffold_349-1575043694:475135..475349Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1575043694:472566..475042TCONS_00060854-exon-scaffold_349-1575043694:472566..475042Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1510915933:478133..478161TCONS_00060854-exon-scaffold_349-1510915933:478133..478161Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1510915933:477552..477673TCONS_00060854-exon-scaffold_349-1510915933:477552..477673Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1510915933:475135..475349TCONS_00060854-exon-scaffold_349-1510915933:475135..475349Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1510915933:472566..475042TCONS_00060854-exon-scaffold_349-1510915933:472566..475042Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1491911889:478133..478161TCONS_00060854-exon-scaffold_349-1491911889:478133..478161Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1491911889:477552..477673TCONS_00060854-exon-scaffold_349-1491911889:477552..477673Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1491911889:475135..475349TCONS_00060854-exon-scaffold_349-1491911889:475135..475349Clytia hemisphaericaexon
TCONS_00060854-exon-scaffold_349-1491911889:472566..475042TCONS_00060854-exon-scaffold_349-1491911889:472566..475042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:472566..478161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0636054 0.0584133 0 0 0.0768673 0.125556 1.45455 2.17208 0.593935 0.4344 1.14409 0.669543 0.622122 1.37694 0.632239 2.97582 0.550586 0.590214 0.104363 0.043879 0.259192 0.213549 0.217825 0.257229 1.96018 2.52783 0.11373 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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