|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060850 ID=TCONS_00060850|Name=TCONS_00060850|organism=Clytia hemisphaerica|type=transcript|length=3834bp
TTTCGCAAATTTACTCAAttccgtgagtggtcctaaatccaacaACCCTG
CCTAATTCTGATGggatctttcaaagatacaaactaaactaaaaacaatc
ctttcgctgtgacgcaacaaagataccaaagtgtcaactaaactgagaaa
tttgatacattgaacccattaaatcaaataacatttgttaacgttttaaa
caaaaacaggGGAACTACATGctagaaatcaaaaaattcttaCCTTAGAT
GCCATCTTCTCCTTCAGTTGATCTAAGTAGGATTATATTCTTTGGACAAG
AATATTTACAACCTCGTGCTCTCACGAAAAGCTGATGTAATTTTATGCCA
ATCCGGTCATTGGGAAAAATGTAATCGTGGTGTAATCCTATCAGCCTAAC
CTTTTCAGTATTAAAACGATTGTAAGGTACGGAAGAGTTTTGGATGAAAA
GACGGTCAACGtgggtttgtttacattttgtgaACCTATGTGTAGGTGAA
AGTAGAGTCGCTTTCAAGCTAAGCCTTGTCGATAAGTGAGTATGAAGTAC
TTTGTACCTAGTTTGTtggaatcaaaacaaatatggccgtcaaaaatttt
tcttggaCTGTGGTGTTTTTTATCTCAATCTTTTTAACAATAATTTCATC
TTACTTTACTGTTAATGGAAATGAAATCAATCTTGGGAATCTagcagaaa
tattttcaaccttAGCTGGAGGAGAAGGTTGTGTATTTCGGTGTCCAAAA
GGCTCACCAAAGAGAAATCCAGGCCACGAGCCAACAAGTAATGGGTGTGG
CTCTTATGGGGTTAAGtttgacACATCACAATACCCTGGGTTCGAAGGTT
GTTGCAATACTCACGATAAATGTTATGATACGTGTAATAACGAGAGAGAA
GATTGCGACAAACAATTCCAAGAATGTTTAAAAGATTCGTGCCTTTTCCA
TACAGTGAAAGGTGGCGTCGAGAAAAAACATAGCAGAAAGAAACTTAAAG
ACTGCGAAGGAATTGCAGATGTGATGTATGCTGGTACATTAGGACTTGGA
TGTGGGTCATATTTAGAAGCTCAACGAAATGCATGTCTCTGTGATGGAAA
AACTCTTTCTAAAAAGCAGATGCAGAAAATACAACAGAACGAACTGTAGC
TATACTTTCTTTAGCTTTTTATTCAATTAGGATTTTTATCAACCAATTTT
AAGCTATCTTTTATTAGCTGAATTATAGCCTGTATTAAACCCTTTTTCGC
GGAATTAGAACGTCACTTATCATTCCtaaagttaaaggttttatttttac
ataagtgttcccgtttcatatcaggcacatattTAATATCAGGatagtgt
ctgcctattgttatattatgctgatataagaaaataatatttttcttttc
ctctttctgaccaatcttgctctacatccgtgtcaatccaatgtgaaaaa
gcttgtgaattaaaactgatgagtaagcaaacgatatcactcttatttaa
ataCAAAACCTCTAAGGTGGGTTACTCTGCGTACTTTTATTAGAGCAGTT
TTTTTGAACAATATTAAACTGACATTTGTCGAAACCTATGAAGAAATTGA
GACCAAGCACAGccttacttttcaaaaaaattgttattgtAAAAATGAGT
TTAAATCTTATTTCAGAAACAACTtttattccagaaaaaaattattccgA
ATAGAATTGTCCTCTCAGAAGCTTTTGAATTAGCTGAAATCAggctttca
tttttgaaatctcaaATTATTCTTAAGAGATctttattggggggggggca
ctcatatggtatTTTTTTGAGACCCTCAAAatgcactacaagggtcttct
tttagctggatacactgtaagggtgtgtttggggaTTGCTGAATCgcaag
tctgacagtaaaaatctgatgtatctttatagttttgactcgcacTCATT
TTGATTACTTTTGCACATTGTGTCAAGATCTCAGGCTTATTTTCAGGTGG
ATTCATCAAAATtagatatgaaatcaaactacatTGTAAGGGTCAGAGAC
GTTCGGTAAaattctgcactgtaagggtccgatttttaaacccccccccc
cccccggatctTTATTCAAGCCTTGGATAaatgaaatctttttatttttt
gcataggagaaatttattttatatttaattGGAGTATATTattatttcaa
tatttaaatATCTAGAACTATGAATTGTACAATTaagaaatattatcaaa
aaaataaaacaacaaatttagaTGAAAATTTAGCTATTCTAGAAAGAGAA
AATTATTCAAACTTCTCTTCTCTTGTTTACAAGGcaaactggcacacaac
gttcatttaacgttatatggacgttgtgaatattaaataaacgttgaaac
aacgtcgtgtccCAGCTGGGAGAGCTTGAAAATCTACAAATTTGTCAAAT
ATCCAGTAAAGCTCAGAAATGTCGGCAAAATCTGGTTATATTGGCTCCCG
AGATTTGTCCTGCTATATTATGCCAATACCAACAAacttaaaaaagattt
tgaaataggTGAACAAATTTAATAACATTACTAACCCCAAATTTTCATCA
CcgtttttaataaatttataGCTCTAAAAGTGTTCCCTAAAGTTTCCCAA
ATTGAAAAACACTTCATAATAATTCTCTCGTTTGTTATCGTCTTTTCGTG
ATctttgacacccctgtctcacagccccgccCACTAGAACTTTTgtcctc
agtggggatagagattcctattgaaatcccgcTCACAGCCCCGCCCACTA
GAACTTTTgtcctcagtggggatagagattcctattgaaatcccgatggg
gatagaaattctattgttccaaggttaaaaaatccagtggggatggtttt
ggagtacagtttttaaacattgaatttcgaatgcggggatgaaatcaaag
ttattttcccaatggggctgaaattcgaaatttttgCCACATCTTCCACA
TCTTGGGGtccaagtgggtctgtgacacaggggtgttcttTGCGATGAGC
CTAATTTAACACGTTCCCTGCCAAgttcttttcagaaattgaatatttga
cttctttaaattttatcgaaagCTTAACTTTCAGAGACTCCTGTGGCATT
CCATTAGTTTTAACTCAAATGCCTTCGAATGGTGCACTAATCAACTCAGG
ATTTCacgtagatttcaaaaatgcaaaatttctgTATCAAAAGTAATGAC
TCTTGTTAACTGCAATCTTGATCGAAACATATTGAGATCTTAGTATATTT
TAAcacttttcagaatttaaagtttgcgcgagaattgctattttagcact
tctattttctttcatcgaatatttcgattttagaggggttcggAGGGTTC
TAGGCTacattccaagccttattggccttattggagcaaattttgagctt
tttaattCTGAGATCCTAAAGTCTTAAAGtatcatgttaaaactcagagt
taaaactctctttccaactgtagtttaacgcgtttaaaaatcatttgtgg
tgttaaaaatttcgcagggaaaccccctttgtctcaaatgttttgtccat
gattgcagTATTCTACTCTCTCGGCTCTTCATGACTTGGCAGAGAATGTG
CTAAGctgttgaaaaattaaaagaacacACTATATTACGTTAAACTTCCG
GATttaaaatttactctcctgtGACGTCAAATGTAGTTTGTATCATCATT
GTTCCATTCATATTCAATGGTGGTCCGCCCTCAATCTGGAAATTACAACC
TCGAAAATCACATCCTTGTAAAGTAGTTGGGGCT Run BLAST on NCBI protein sequence of TCONS_00060850-protein >TCONS_00060850-protein ID=TCONS_00060850-protein|Name=TCONS_00060850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MAVKNFSWTVVFFISIFLTIISSYFTVNGNEINLGNLAEIFSTLAGGEGC
VFRCPKGSPKRNPGHEPTSNGCGSYGVKFDTSQYPGFEGCCNTHDKCYDT
CNNEREDCDKQFQECLKDSCLFHTVKGGVEKKHSRKKLKDCEGIADVMYA
GTLGLGCGSYLEAQRNACLCDGKTLSKKQMQKIQQNEL Run BLAST on NCBI transcript from alignment at scaffold_349:413260..420734- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060850 ID=TCONS_00060850|Name=TCONS_00060850|organism=Clytia hemisphaerica|type=transcript|length=7475bp|location=Sequence derived from alignment at scaffold_349:413260..420734- (Clytia hemisphaerica)
TTTCGCAAATTTACTCAATTCCGTGAGTGGTCCTAAATCCAACAACCCTG
CCTAATTCTGATGGGATCTTTCAAAGATACAAACTAAACTAAAAACAATC
CTTTCGCTGTGACGCAACAAAGATACCAAAGTGTCAACTAAACTGAGAAA
TTTGATACATTGAACCCATTAAATCAAATAACATTTGTTAACGTTTTAAA
CAAAAACAGGGGAACTACATGCTAGAAATCAAAAAATTCTTACCTTAGAT
GCCATCTTCTCCTTCAGTTGATCTAAGTAGGATTATATTCTTTGGACAAG
AATATTTACAACCTCGTGCTCTCACGAAAAGCTGATGTAATTTTATGCCA
ATCCGGTCATTGGGAAAAATGTAATCGTGGTGTAATCCTATCAGCCTAAC
CTTTTCAGTATTAAAACGATTGTAAGGTACGGAAGAGTTTTGGATGAAAA
GACGGTCAACGTGGGTTTGTTTACATTTTGTGAACCTATGTGTAGGTGAA
AGTAGAGTCGCTTTCAAGCTAAGCCTTGTCGATAAGTGAGTATGAAGTAC
TTTGTACCTAGTTTGTTGGAATCAAAACAAATATGGCCGTCAAAAATTTT
TCTTGGACTGTGGTGTTTTTTATCTCAATCTTTTTAACAATAATTTCATC
TTACTTTACTGTTAATGGAAATGAAATCAATCTTGGGAATCTAGCAGAAA
TATTTTCAACCTTAGCTGGAGGAGAAGGTTGTGTATTTCGGTGTCCAAAA
GGTAGGTAGTGATTATATTTCATTCATTGCTCATCTTCTTTTCTTTCGAT
TTATTCGGTTTATTGTTTTTTGTCAACATTTTTGCTTGTCATTTTCCTGT
TTTGTTCACTTTTGGTTTAAAAGCAAAATTATTTAATTATTGAATTTAAC
TTGGAATGCCAAAGTCTCGCTTTCTTCACGGTACTCCATTGCAGAGGCCG
GCAAAAATGGTAGGTAAAAATGCGCACTTTAGTGAAAGGTTAGAGGAATG
TAAACATTGTGAATTTTTTTCTCTCCTTTAAAGAGAATGATTTAGATATT
TGAACATGATATCAATGATAATTTTATAAGTCTCTCCTGAAAATTTCACA
AAAATTCATCAAGAGGAAAAGAAGTTATGATTAAAAGGAGTTCTTTACCT
CTACCGTTTTTCTGCTAGATGTTTCCTTATGAGAACCAGATGTTTACCTA
CCATTTTTTTACGGAGGAGAGTGAATTTTCCGTGGTTGCTAAAATCAAAA
CAATGGAAAATTGGATTGACGCGTGCGCAGTCGACACTACTCCTAAACGG
TGTATTTACAATAAATGAGCCAGTTTGTGTAGGGTTGTTACAAATGATAA
GCTATCTCATTTTGTACCGTACGGTACACGGCCGTGAAGTTTGGTAAACT
TGCATCAGTGGAGGGAAACTTGCATAGCCCTCAAATGAATGACCTGACTG
GTCATTAAAATGCAAAGTTGAATCAAAACAAACCAGATTTACAAAAAGTT
TGCTGTCGGTAACCTTCAGATCTAACTGATGTCATGCATAATATCATGTT
TTTAATGTCATTATTAAATTTGCGGTTACACGTCTAACAAGCAGCCATCA
AGAAACATCTAGATTTCTGCCATCTTGAAATTTATGATCTTGCATGAATT
TTTACTATCAAACCACCCTTATTCAGGCAGGACCCTGCCGACGCACCGGA
CTTAACGAGCACCGGACATGCAAAAGTCCGGTGTAAAATGAGAATTTTTT
TTGCCACCGGACAATCTCTACACCGGACTCAAGGAAGTCGGATGTCCGGT
GTCAAAGAAGGATATTTTTTCCACCGGACAATCAAAACACTGGACATGAC
CAGTCCGGTGCGTCCGGTGTTTCTTAATTTTTTGTTTAATAAATGTCTGG
CGTCCAAAATTCCCTGTACGCAACACCGGACTGACACCGGACTTATTGCG
TCCGGTGTAGCGAAAGGATACTTTTTGCCACCGGACAAATACACCGGACA
GTCCGGTGCTCGCAGGGTCCTATTCAGGCTAACTCTTTCTTAAGCTCTAA
AAAAAAAAGGAAAAATAGAAAAAAGTATTTTTTACTGCTCTATTTCACAA
ATATACTGAATTTGAAAGATCTTCTATGTGGCGTTTTTTTGCAAACTTCA
AAAGACTGATTTTTGTCTCGCTTTTGTGGAACTTTAGCTTAAGTGCTTGC
GTGCAGCATAGGTTACAAAGTCCAAATATGTGTTTCCCGTAATTTTTGTA
TGAAGAGTTAGGTCTATACTGTCTTTTACTCACCTGCGATTCTGTCTGCG
ACGGCAAGTAACTCGCCAAAAATACTTGCACAGAAAATATGAGATTCTAA
AATGGTTGAGTAGGGCAATGAGCGGAACTGCCTAGTTCATTTGCAATTTG
TGCCGAAATTTTGCTGCTTTGAATGGTCAGGCATTTGATGGCAATGCAAG
TTTCCCTCCCTTCCACTGCACTGATGCAAGTTACCGACTTCACAGTGAGT
GTTTCTTTTCTGAGAGATACAAATACCTAGTATTTTGAATATTATTAACT
TATTCATTTAAAAGTACATGATAGGTTGTACATTGACCAATCAGATTTTA
GATATTTTTTTGGGTCGACAATTAGAAAAATATTTCATGGTTTTGCATTA
TTATTTTTAGGCTCACCAAAGAGAAATCCAGGCCACGAGCCAACAAGTAA
TGGGTGTGGCTCTTATGGGGTTAAGGTATTCATATTTTCTTCTTTATCGT
TGGACTTTAATTATCATCAAGATAGGCTTCGGAGGAATTGCCTAAGAATA
TTTTATATTGTTTAACACAAACCGTTCTATTTCTATCCATTTATTTGCAT
AAGCCTAAAAAAGCTAACATCGCAAATAGGTTTGGAAGCGCTCTAACTTT
GGTTGGAAGGGTAGAGTTTTAACTCTGAGTTTTAACATTAGTCAAGACTT
ACAAGCTTAGGATATGAGGATCCAAAAGTTCAAAAATGGTCAATAGGACT
CAGAATATAGTCTGGAAGCCTATAAACCCCTCCTGAATTGAAATATTCGC
TAAAATTTAACAACTAGCCCAAAAGCAACTTTCTCGCTCGAACTTTAAAT
TGATAAAAACAAAATAAAATTCTCAATATATTTTGACCGATATTGTAGGA
GCTAACTTCTCACATTAAGCAAAAAAGGAAAGATTCCAATGTCATAAATT
TACTTGCTTAAATAATATTCTGTTCATTTTTTTATAAGAATAAACTATAG
AATACTTTAAGGCTTTACGGACTCTAAGACACCCCAATTTCATAGGAAAA
CGAGCAAGAACACTCAAAAATGGCAAAAATAAGAACATGTTAAGAACATT
TTTAAGCTTAAAACTCAAAAAATTAAGAACATCTCAAGGCTTCAAAATTT
TTGGATGTTTTTATAGAAAAACATAATATTCCATTCATTTTTTTTCAGTT
TGACACATCACAATACCCTGGGTTCGAAGGTTGTTGCAATACTCACGATA
AATGTTATGATACGTGTAATAACGAGAGAGAAGATTGCGACAAACAATTC
CAAGAATGTTTAAAAGATTCGTGCCTTTTCCATACAGTGAAAGGTGGCGT
CGAGAAAAAACATAGCAGAAAGAAACTTAAAGACTGCGAAGGTTGGTAGT
AAAAACCTAAAGGAGTACATGTACCATTGATGCTCTCTAATTCGACTTTC
AAGGGGAATTGGATTTTCATCGAATAAGGGAGCGTCGTTTATGAGAGTTT
CTTATTGACGGGGACTTTAAATTTCATCGAATAATGGAGCCTATCGAATA
GTAGAACGTCGAAATAGAAAGTGTAAACTGTATTTCTTGGACTACACGTT
TTTTTATGTAAGAACATAAGGCTTCGATGGCCAAAATATTACGAACAAGT
TAAGAACATTTTAAGGCTTTGCGGACTCTAAAACACCTTTTAGAGTTAAA
GACACTAACCTTTAAATACCCTGGAAATAAATAAATGAATGCAAATTTGT
CACGCTTCCATGATTTAATGATGATGTTGTTTTACTAATTATCATAATAA
TATCAAACATGTTTTGTATAAGAACACATTCCGTTAATGCCATACACGTT
TTTTATAAGAACAAACTATAAAAGACCATAAGCTTCGATGGCCAAAATGT
TAAGAAAAAGTTAAGAACATTTTAAGGCTCCGCGGACTTAAAAACAGCTG
ATTTTCCTTAGGAAAATAAACAAAAATACATAAAAAATGGGGAAAATAAG
AACATGTTAAGAACATTTTTAGGCTTGAAACTCAAAAAGTTAAGAACATC
TGAAGGCTTCAAAAGTTTTGGATGTTCTTGTGAAAAAATGTGTAATTTTC
AAGGCTTGGTGGCTGATACTTTTGACAAATGGCTCTGTTTACAAAAATTC
TAAATTCTTAATACTAACATACGCCGAAATTTGTAGTCTGTTTGGGGTTG
TGCAAGAACACTACTTCTAATTCCTATACTAATGTTTTGGAGGCAAACAT
TCGATTTGCTTAAGGGATCGCTTCTACAGATTCGAATGTTGCTTCCATAA
TGGTAGAAATTACGCAAGTTAACTAAAGATGAAAAACTCTTTACTTGAAA
GTTATTTGTGCAAATCAGTCTCAAGTCATACTGTTTGTTTCTAATTTTAG
GAATTGCAGATGTGATGTATGCTGGTACATTAGGACTTGGATGTGGGTCA
TATTTAGAAGCTCAACGAAATGCATGTCTCTGTGATGGAAAAACTCTTTC
TAAAAAGCAGATGCAGAAAATACAACAGAACGAACTGTAGCTATACTTTC
TTTAGCTTTTTATTCAATTAGGATTTTTATCAACCAATTTTAAGCTATCT
TTTATTAGCTGAATTATAGCCTGTATTAAACCCTTTTTCGCGGAATTAGA
ACGTCACTTATCATTCCTAAAGTTAAAGGTTTTATTTTTACATAAGTGTT
CCCGTTTCATATCAGGCACATATTTAATATCAGGATAGTGTCTGCCTATT
GTTATATTATGCTGATATAAGAAAATAATATTTTTCTTTTCCTCTTTCTG
ACCAATCTTGCTCTACATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAA
TTAAAACTGATGAGTAAGCAAACGATATCACTCTTATTTAAATACAAAAC
CTCTAAGGTGGGTTACTCTGCGTACTTTTATTAGAGCAGTTTTTTTGAAC
AATATTAAACTGACATTTGTCGAAACCTATGAAGAAATTGAGACCAAGCA
CAGCCTTACTTTTCAAAAAAATTGTTATTGTAAAAATGAGTTTAAATCTT
ATTTCAGAAACAACTTTTATTCCAGAAAAAAATTATTCCGAATAGAATTG
TCCTCTCAGAAGCTTTTGAATTAGCTGAAATCAGGCTTTCATTTTTGAAA
TCTCAAATTATTCTTAAGAGATCTTTATTGGGGGGGGGGCACTCATATGG
TATTTTTTTGAGACCCTCAAAATGCACTACAAGGGTCTTCTTTTAGCTGG
ATACACTGTAAGGGTGTGTTTGGGGATTGCTGAATCGCAAGTCTGACAGT
AAAAATCTGATGTATCTTTATAGTTTTGACTCGCACTCATTTTGATTACT
TTTGCACATTGTGTCAAGATCTCAGGCTTATTTTCAGGTGGATTCATCAA
AATTAGATATGAAATCAAACTACATTGTAAGGGTCAGAGACGTTCGGTAA
AATTCTGCACTGTAAGGGTCCGATTTTTAAACCCCCCCCCCCCCCCGGAT
CTTTATTCAAGCCTTGGATAAATGAAATCTTTTTATTTTTTGCATAGGAG
AAATTTATTTTATATTTAATTGGAGTATATTATTATTTCAATATTTAAAT
ATCTAGAACTATGAATTGTACAATTAAGAAATATTATCAAAAAAATAAAA
CAACAAATTTAGATGAAAATTTAGCTATTCTAGAAAGAGAAAATTATTCA
AACTTCTCTTCTCTTGTTTACAAGGCAAACTGGCACACAACGTTCATTTA
ACGTTATATGGACGTTGTGAATATTAAATAAACGTTGAAACAACGTCGTG
TCCCAGCTGGGAGAGCTTGAAAATCTACAAATTTGTCAAATATCCAGTAA
AGCTCAGAAATGTCGGCAAAATCTGGTTATATTGGCTCCCGAGATTTGTC
CTGCTATATTATGCCAATACCAACAAACTTAAAAAAGATTTTGAAATAGG
TGAACAAATTTAATAACATTACTAACCCCAAATTTTCATCACCGTTTTTA
ATAAATTTATAGCTCTAAAAGTGTTCCCTAAAGTTTCCCAAATTGAAAAA
CACTTCATAATAATTCTCTCGTTTGTTATCGTCTTTTCGTGATCTTTGAC
ACCCCTGTCTCACAGCCCCGCCCACTAGAACTTTTGTCCTCAGTGGGGAT
AGAGATTCCTATTGAAATCCCGCTCACAGCCCCGCCCACTAGAACTTTTG
TCCTCAGTGGGGATAGAGATTCCTATTGAAATCCCGATGGGGATAGAAAT
TCTATTGTTCCAAGGTTAAAAAATCCAGTGGGGATGGTTTTGGAGTACAG
TTTTTAAACATTGAATTTCGAATGCGGGGATGAAATCAAAGTTATTTTCC
CAATGGGGCTGAAATTCGAAATTTTTGCCACATCTTCCACATCTTGGGGT
CCAAGTGGGTCTGTGACACAGGGGTGTTCTTTGCGATGAGCCTAATTTAA
CACGTTCCCTGCCAAGTTCTTTTCAGAAATTGAATATTTGACTTCTTTAA
ATTTTATCGAAAGCTTAACTTTCAGAGACTCCTGTGGCATTCCATTAGTT
TTAACTCAAATGCCTTCGAATGGTGCACTAATCAACTCAGGATTTCACGT
AGATTTCAAAAATGCAAAATTTCTGTATCAAAAGTAATGACTCTTGTTAA
CTGCAATCTTGATCGAAACATATTGAGATCTTAGTATATTTTAACACTTT
TCAGAATTTAAAGTTTGCGCGAGAATTGCTATTTTAGCACTTCTATTTTC
TTTCATCGAATATTTCGATTTTAGAGGGGTTCGGAGGGTTCTAGGCTACA
TTCCAAGCCTTATTGGCCTTATTGGAGCAAATTTTGAGCTTTTTAATTCT
GAGATCCTAAAGTCTTAAAGTATCATGTTAAAACTCAGAGTTAAAACTCT
CTTTCCAACTGTAGTTTAACGCGTTTAAAAATCATTTGTGGTGTTAAAAA
TTTCGCAGGGAAACCCCCTTTGTCTCAAATGTTTTGTCCATGATTGCAGT
ATTCTACTCTCTCGGCTCTTCATGACTTGGCAGAGAATGTGCTAAGCTGT
TGAAAAATTAAAAGAACACACTATATTACGTTAAACTTCCGGATTTAAAA
TTTACTCTCCTGTGACGTCAAATGTAGTTTGTATCATCATTGTTCCATTC
ATATTCAATGGTGGTCCGCCCTCAATCTGGAAATTACAACCTCGAAAATC
ACATCCTTGTAAAGTAGTTGGGGCT Coding sequence (CDS) from alignment at scaffold_349:413260..420734- >TCONS_00060850 ID=TCONS_00060850|Name=TCONS_00060850|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_349:413260..420734- (Clytia hemisphaerica)
GAATTGCAGATGTGATGTATGCTGGTACATTAGGACTTGGATGTGGGTCA
TATTTAGAAGCTCAACGAAATGCATGTCTCTGTGATGGAAAAACTCTTTC
TAAAAAGCAGATGCAGAAAATACAACAGAACGAACTGTAGTTTGACACAT
CACAATACCCTGGGTTCGAAGGTTGTTGCAATACTCACGATAAATGTTAT
GATACGTGTAATAACGAGAGAGAAGATTGCGACAAACAATTCCAAGAATG
TTTAAAAGATTCGTGCCTTTTCCATACAGTGAAAGGTGGCGTCGAGAAAA
AACATAGCAGAAAGAAACTTAAAGACTGCGAAGGCTCACCAAAGAGAAAT
CCAGGCCACGAGCCAACAAGTAATGGGTGTGGCTCTTATGGGGTTAAGAT
GGCCGTCAAAAATTTTTCTTGGACTGTGGTGTTTTTTATCTCAATCTTTT
TAACAATAATTTCATCTTACTTTACTGTTAATGGAAATGAAATCAATCTT
GGGAATCTAGCAGAAATATTTTCAACCTTAGCTGGAGGAGAAGGTTGTGT
ATTTCGGTGTCCAAAAGGAATTGCAGATGTGATGTATGCTGGTACATTAG
GACTTGGATGTGGGTCATATTTAGAAGCTCAACGAAATGCATGTCTCTGT
GATGGAAAAACTCTTTCTAAAAAGCAGATGCAGAAAATACAACAGAACGA
ACTGTAGTTTGACACATCACAATACCCTGGGTTCGAAGGTTGTTGCAATA
CTCACGATAAATGTTATGATACGTGTAATAACGAGAGAGAAGATTGCGAC
AAACAATTCCAAGAATGTTTAAAAGATTCGTGCCTTTTCCATACAGTGAA
AGGTGGCGTCGAGAAAAAACATAGCAGAAAGAAACTTAAAGACTGCGAAG
GCTCACCAAAGAGAAATCCAGGCCACGAGCCAACAAGTAATGGGTGTGGC
TCTTATGGGGTTAAGATGGCCGTCAAAAATTTTTCTTGGACTGTGGTGTT
TTTTATCTCAATCTTTTTAACAATAATTTCATCTTACTTTACTGTTAATG
GAAATGAAATCAATCTTGGGAATCTAGCAGAAATATTTTCAACCTTAGCT
GGAGGAGAAGGTTGTGTATTTCGGTGTCCAAAAGGAATTGCAGATGTGAT
GTATGCTGGTACATTAGGACTTGGATGTGGGTCATATTTAGAAGCTCAAC
GAAATGCATGTCTCTGTGATGGAAAAACTCTTTCTAAAAAGCAGATGCAG
AAAATACAACAGAACGAACTGTAGTTTGACACATCACAATACCCTGGGTT
CGAAGGTTGTTGCAATACTCACGATAAATGTTATGATACGTGTAATAACG
AGAGAGAAGATTGCGACAAACAATTCCAAGAATGTTTAAAAGATTCGTGC
CTTTTCCATACAGTGAAAGGTGGCGTCGAGAAAAAACATAGCAGAAAGAA
ACTTAAAGACTGCGAAGGCTCACCAAAGAGAAATCCAGGCCACGAGCCAA
CAAGTAATGGGTGTGGCTCTTATGGGGTTAAGATGGCCGTCAAAAATTTT
TCTTGGACTGTGGTGTTTTTTATCTCAATCTTTTTAACAATAATTTCATC
TTACTTTACTGTTAATGGAAATGAAATCAATCTTGGGAATCTAGCAGAAA
TATTTTCAACCTTAGCTGGAGGAGAAGGTTGTGTATTTCGGTGTCCAAAA
GGAATTGCAGATGTGATGTATGCTGGTACATTAGGACTTGGATGTGGGTC
ATATTTAGAAGCTCAACGAAATGCATGTCTCTGTGATGGAAAAACTCTTT
CTAAAAAGCAGATGCAGAAAATACAACAGAACGAACTGTAGTTTGACACA
TCACAATACCCTGGGTTCGAAGGTTGTTGCAATACTCACGATAAATGTTA
TGATACGTGTAATAACGAGAGAGAAGATTGCGACAAACAATTCCAAGAAT
GTTTAAAAGATTCGTGCCTTTTCCATACAGTGAAAGGTGGCGTCGAGAAA
AAACATAGCAGAAAGAAACTTAAAGACTGCGAAGGCTCACCAAAGAGAAA
TCCAGGCCACGAGCCAACAAGTAATGGGTGTGGCTCTTATGGGGTTAAGA
TGGCCGTCAAAAATTTTTCTTGGACTGTGGTGTTTTTTATCTCAATCTTT
TTAACAATAATTTCATCTTACTTTACTGTTAATGGAAATGAAATCAATCT
TGGGAATCTAGCAGAAATATTTTCAACCTTAGCTGGAGGAGAAGGTTGTG
TATTTCGGTGTCCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060850-exon-scaffold_349-1575043694:419984..420734 | TCONS_00060850-exon-scaffold_349-1575043694:419984..420734 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1575043694:418010..418074 | TCONS_00060850-exon-scaffold_349-1575043694:418010..418074 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1575043694:417094..417286 | TCONS_00060850-exon-scaffold_349-1575043694:417094..417286 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1575043694:413260..416084 | TCONS_00060850-exon-scaffold_349-1575043694:413260..416084 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1510915933:419984..420734 | TCONS_00060850-exon-scaffold_349-1510915933:419984..420734 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1510915933:418010..418074 | TCONS_00060850-exon-scaffold_349-1510915933:418010..418074 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1510915933:417094..417286 | TCONS_00060850-exon-scaffold_349-1510915933:417094..417286 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1510915933:413260..416084 | TCONS_00060850-exon-scaffold_349-1510915933:413260..416084 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1491911889:419984..420734 | TCONS_00060850-exon-scaffold_349-1491911889:419984..420734 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1491911889:418010..418074 | TCONS_00060850-exon-scaffold_349-1491911889:418010..418074 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1491911889:417094..417286 | TCONS_00060850-exon-scaffold_349-1491911889:417094..417286 | Clytia hemisphaerica | exon |
| TCONS_00060850-exon-scaffold_349-1491911889:413260..416084 | TCONS_00060850-exon-scaffold_349-1491911889:413260..416084 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:413260..420734 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004623 | phospholipase A2 activity |
| GO:0005509 | calcium ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0050482 | arachidonic acid secretion |
| GO:0006644 | phospholipid metabolic process |
| GO:0016042 | lipid catabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0050482 |
arachidonic acid secretion |
| biological_process |
GO:0016042 |
lipid catabolic process |
| biological_process |
GO:0006644 |
phospholipid metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005509 |
calcium ion binding |
| molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
BLAST of TCONS_00060850 vs. Swiss-Prot (Human)
Match: PG12A (Group XIIA secretory phospholipase A2 OS=Homo sapiens GN=PLA2G12A PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.655e-16 Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 1
Query: 712 LAGGEG--CVFRCPKGS-PKRNPGHEPTS-NGCGS--YGVKFDTSQYPGFEGCCNTHDKCYDTCNNEREDCDKQFQECLKDSCLFHTVKGGVEKKHSRKKLKDCEGIADVMYAGTLGLGCGSYLEAQRNACLC 1092
L GGE C ++C GS P G++P+ NGCGS +GV + P CCN HD+CY+TC + DCD++FQ CL C G+ + ++ CE ++++ + LGC YL++QR AC C
Sbjct: 55 LLGGEDGLCQYKCSDGSKPFPRYGYKPSPPNGCGSPLFGVHLNIG-IPSLTKCCNQHDRCYETCGKSKNDCDEEFQYCLSKICRDVQKTLGLT-----QHVQACETTVELLFDSVIHLGCKPYLDSQRAACRC 181
The following BLAST results are available for this feature:
|
