TCONS_00060836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060836
Unique NameTCONS_00060836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060836 ID=TCONS_00060836|Name=TCONS_00060836|organism=Clytia hemisphaerica|type=transcript|length=1211bp
GCGACCACTTGTATGGTCattgaattataaatttttaacGTTCTTACAGG
GGAATCTTCTTGTTCTTGAAAACCCTAAAGGggcttttttgtttgtttga
tcGAAATTCAAGAACATCGTACCCGCCTGACATTGATCCTAGATATTTGC
AGCGGAGGTATGAATCACTAGTCGGAACAGTCGGCAAGAAATTCCAAACT
AAACGAAAAAGGAAAGCTATTGAAGAAGAATTGAGCCAAAGTGACGGCAC
CGAACCGGAAGAAGATACGATAGAAAAGCGCGCCAAAAGAGGCTTTGTTA
AACCACGTGTCTCACCGAAAGACGAATTCGAATTTTGAAAAGGAGCATTT
TTGGGGAGCTGGTCAGATATTTTTTAAGATACCATACGCCATGGCAACCG
AACCGAGTAGCCTTGCCAACTTGTATCAAGATATGGACGATATCGCGAAA
TGTTTCGGCCACATCGTACATAATATTATCAATAATTCAACCGATTTCGA
TGTTCTCGATTTCGCAAACCATGATTTGTACTTGAGCGAAGCCTATTGTT
TGTTGTGGCAAAATGCGGAAACGGGAGAAGTTGATGGACGGCGGGTTGGA
TTACCGCTAAAGATTGGTGTTTTGGCGGCGCTTTTTATTGATCTACACGC
CAGCGGAATGATTGATGTTTTCATGTCGCCTGATGAGGATGAACCGATGT
TTCGCGTTTTGGATACGCATTCAACACAAACTTTCTTagattttgccatt
tttgataGTCTGAGAGTCGCCAATGCTCAAGGTCGGCTCCGCGAGGCCAA
ATTATGGAAATGGCTCTTAAGAGCCGAAGACGCGGATTGTGTTGAGAACA
CGTTTGAGAGTTTGATGGCGCGTGGTATTTTGAAAGAGAAATCAAGCGGT
TTCCTTGgtctttttaaaaagtttccAACCGTGAACCCTGAACCAGAACG
AACGttggaaaagaaaattaaagataTTGTTTTTAATGATCATAAACTTG
ACAGTTATATGTTATCATTGTTGATTTTGAGTCGAGAGAGCGATCGTATT
TTCATGTGTGAAGATCCTATCTTGAGGAAACATTTCACGTCGGCGGAATA
TACAATGGCCAAAAAGAACCTGGACCGGATCTTGTTAGGCCGATTATCAT
TAGATTGAGTTTTTAAtccttttttatatattatacattaaaggaagaga
ttttggcggga
Run BLAST on NCBI

transcript from alignment at scaffold_349:138061..144902-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060836 ID=TCONS_00060836|Name=TCONS_00060836|organism=Clytia hemisphaerica|type=transcript|length=6842bp|location=Sequence derived from alignment at scaffold_349:138061..144902- (Clytia hemisphaerica)
GCGACCACTTGTATGGTCATTGAATTATAAATTTTTAACGTTCTTACAGG
GGAATCTTCTTGTTCTTGAAAACCCTAAAGGGGCTTTTTTGTTTGTTTGA
TCGAAATTCAAGAACATCGTACCCGCCTGACATTGATCCTAGATATTTGC
AGCGGAGGTAACCTTTTTATGTAGTAATTACACATGGCTTTGTGTAGACT
CCGTAGTTGTCGTAATAAAGACTCTTGAATATTCATGATATGCATCACTG
CAATGTCTTTGACATCACACCATAGACCCAACAGCTGATTGGTTGTAAGT
GACGTAAAGTCCATCAATACGTCACTTTCAACCAATCAGCTGTTGGGTCC
GTGATGTAATGTATGTTAGAAGACATAGCAATGGTGCGTATAATGTGTTC
AATATTTTCTCGATCCATTTTCTTATATTGCAGGTATGAATCACTAGTCG
GAACAGTCGGCAAGAAATTCCAAACTAAACGAAAAAGGAAAGCTATTGAA
GAAGAATTGAGCCAAAGTGACGGCACCGAACCGGAAGAAGATACGATAGA
AAAGCGCGCCAAAAGAGGCTTTGTTAAACCACGTGTCTCACCGAAAGACG
AATTCGAATTTTGAAAAGGAGCATTTTTGGGGAGCTGGTCAGATATTTTT
TAAGGTGAGATTTTCATTTCTTGATTCCGAAAGTTTTATATTATTACACC
CCTATCCCACAGCGCGGATAAAAATCTCTATCGAAATCCCTACGGGGATA
TAGAAATTCCATCGTTCCAAGCTTAAAGAATCCAATGGAGTTTTGAAGTG
CAATTTCTTACATTAAATTTCGAATGAGGATGAAGTCAAAATTAATAGTC
GTTTGGGAGAGCACAAGTTACCCAAGCAGAAATTTTTATAATGATAACGT
CATAAAGGTGATTTGTCTTTTACAACACAGTTGTTACTAAGGTGCAAGAT
AATTTATCATGTTTGCACTGGCTGGTGTAATTTGTTGACCGTCGCGTTCT
CCCAAATGACTATTTCCCAGTGGGCTTATGCTGTAGGATATTTTTTCCAT
CGGGGACGGAATTTTGGGCAAACTTTCCAGTGGGGACGAGGCCTTAGCGG
GTCTTCGACACAGTTTGACATACTTTGAAAGTATTGAAGTTTGTTGAAAA
GGTTGGGCCAAAAAAGGTTTCATAAAGACTTTCGTTGATTTAAATTCTTC
ATTTATTTTCGATTGAGTTGCAGATTTGATTTATTAAAAGGTAAAATGGA
AAAGATGGTCAGTTTTTATTTTTTGAAAGAAAAATCTTTGTCCAACATTA
TGGTACCAAGACTTAAAGACTCTTGTTTCTTGTTTATCCAAGCCAGAGAT
CTTTTCGTATATAAATCCAACAGAAAGTCTCGCAAAGCTCTTGTAAGAAA
TCATGTTTTGAGGTTTTGTTAATCTTGCCCAAATCACTATTCATCAAACT
TTGTTATACTTTCATACGAAAAAAGTCTTCTTTTCTACATGTACATGTAC
TTCAAGCGAAAGTGTTTGGGTGTGTGACAAGTAATATAAACTTTTAACAG
AGACTTCCTTTGTTTCTGTTTCAATTTTTCCTTTGGAGTTTTTAATGACT
TACTAGATTTTCCCAGTTTTAAGTACTGGTGTGTACTGGTGTAATTTCAG
TTAAACATTTTACCCCTTATTTTGTAGTAGGGGCCAACCCCATCGGTAGC
ATCTTTCGTGGGATGCAACCGCATGCAATTGGTTCGAAAGTAGATAGGAT
TTTGAGACTTTTTTGAGTGGACCCGCGAGTTAGGCCTGGCAAAAGTTTTT
GACAAACAAATGACTTCACAGGAAAAACTCTTAACACTAAAATGAGTAAA
AAACGGACAAATTGTTTATATCATCGGAGAGAGTATGAAATTAAATCATC
TGTTTTTTTTTAATCTTTTAAATCAAGATACTGTACCGATATCATCAACT
TTATGAAAACTACCTTAATAAATTTCTTCTTCTGAAAAGTTGCTGCCATC
AGATCTTATTGCGACGTAATAGGCCCCGTGGTATAGTGGTTATTAACATT
GATTACTGTAGCGGAGACAAAAGTTCGATTCCCACTTGCGATGGTTCACT
TGGCAAGTTAACATATGGCTAACTTGTGCCATGTGAGGGGAATTGGATAT
TCAGTCCAAGGTTGCTGACAGGACAAGAACGGGTCGAATAGCCTGCTGTT
ACTAAGCCAAATAGATAGATAGTAAAGATTTATGATTTCCTCTCCGTGAT
TGTGTTAAAAGTTGTTGCTTTAAAGTCTGTTCAAGACCAATTTGGAGAAA
GAAAGCTTAAACAGTGGCTAAAAGTTTATTTCTTCCCATGGACTCAGTTG
GCGTGTGAAGTCGGTTTATTAAAGCTTGTTTTCCTAAACAGATTTTATAA
TTCTATGTACAAGTGTTTCATAAAGCTGTTCTTGTCTTTTTCAAATTAGT
TGTTGAGCACATACAGGGAGATTTTTCAGTAAAGTCATGATTTGAAAGTA
TCTAACTTTTCATCAGACTGTGATCGTAACGATATAAAGATAATTGATTT
ATTAGAATGTTCTTGCTGAAGAGATTTGAAATTCATTTCACATGAGTTTG
ATGAAGTTTTGGTTACTAACTTAAGCTTTTGTTGAACTTAGATACCGATT
TTGAAGCTATATAAGAATTATGTTTAGTGTATTACATTTTTCTAGTAGTT
GTTGGTAGTTGTGTGTATAAATTTACTTTTGTTCAACTTCAAGAAGCTGC
ATTCGCTGCAAAATGTATCAGGTTAGACAGTCCATCCTATTTATATTCCA
GTAATTGATGAATTAAACATGCCTACCCAATATATACCCAATTTTTACTA
CTTTGACCCCTAAATTGCCTGAAATTGAGTAATTTCAGGCTCAGCATTGT
TCTTAAATTGTTCTAATTTTTGGCGAATTTGAGCCTCATTGCGTTCTTAT
AAAAAAGTGAATTTGCAAACACGTGTAAACATACTTTAAAAGTAGAGATT
TTAGTGGAAAGAAAAGTTCCCAAAAATTTCTTTTTTCCACCACCTAACAG
ATTTAATATATTTCAAGTATTTTTGCAAATTTGTGCCATTTCGGTGCTTA
TTTTTTTGCAAATTTGATAGCGATTTTTGGCCAAATCCTATTCGCCAAAT
TAAATTTCTGCCAACATTTCTCAGAAGGGAACCTGAGGCAAGAACAAATA
AGCCTTTAGATAGGTCACAATCTGCTTAACCAACTCAGAAAATGTTTTCC
ACCACAAAAGATGGCTACAAAAAAGATCGTAACAGCCAGCACTCCTTTAA
AAAGGGGTTGTCTTACCCTGGAATGATTTTATTTTTGAAATTGACAAAAG
CACCATGACATCTTTGTCTGCCGTTTACATTTTATTTCATTTCGAAATGC
CCCCTTCTGTGTTTTTTTTTAATTTTCTTTTTCCAAACGGTCACCATATT
AAGAGTCTCTGGTCTAATTTTCATGGTGGTTTTTCCTGAGAAACCTCAAT
GGTTTTTCTTTTTGTGTGAATTTTTATTCGAGAAAAAGACAACCCCAAAT
TGAACAATTTTCATTTAAAAACATAAGTATCGGCTCCTTTTATGGCTTTA
CGTCTTTTTTGTTCCTCTTTTTTTTTTCGTTTTTTTCTTCCATCCATAGG
ATTCAGGGTCCTTTTGTGTCCCTCTTTTGGGCTTCTTGGGCTTTTCAATA
TTATTTTCCATTTGATTTGATTGGATTTGAAAACCTTGTTGTTTATTTGT
GTTTATTGCCGACCCAAAAAAATATCAGCGTTTTGATTGGTCGAGAGCAT
CGAGATATTTGCGATATTTCATATTTCTTTAGTCTGGAAATATGACCGCG
TTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCTCGCC
TAAAGGCTCGGAAAAATATTACGGAAAAATCTCGGTACTCGTAAAATATT
TCTCGTATTGCACTCGAAGTCATGCGATAACTAGTACTTATTATTTGATT
TATTTTCACCTGATTCTCAATTCAATTTTTTTTTTTATTTCACTCTTTTA
TAATGATTTTTTGCTCCCAATTTAATTGGAAAGATTTTGAACTTTTTCGT
CCGATTAGGCTCCCAAAGGCTTTGCTTGTTTGAAAAATTTGGTAAGGTTA
TCAAGGGGTTGATGATTTGATTTTTGTAGTCTCAGATTCATGGTGCTTCG
CTTGTCTTTTATTACCTGGGCTTTTACAGAACAATGCAACGTCCTATTTA
GGCTACGTCATATCTTCCTTCGTTTCGAGCGTAAGGCCTAAAAGCCTGGA
TCTGTCTATTGTGTAGACTACGTCCTATTTAAAGCAAATTTATCTTTATA
TACCAGGAGTAGTCAATCATAGCAAACCATTATTCGATCGAAATCGATTT
ATGTGTGATTGATGTTTGACTATTAAGGGAAGAAATTTTCGCGGGAACAA
AATTTCGCGGTTTTCGCGGATTTTGCCTAAAACCGCGAAATTAAGTTCCC
GCGAAATTTTACAAAATCGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
AACGCTTTTGGCCAAAAATATCCTGCAACCGCGAAATTAAATTCCCGCGA
ATTTTTCGAAAATCGATGAACCGCGAAATTAAATTCCCGCGAAAAAAAAG
AATTTGACCAACCGCGAAATTAAATTCCCGCGAAAATTTCTTAAATCGAA
TAATTTAAGGCAACTGAATCCAGTTGAGAATTGAACTATTTTTTTGTTCG
ATTTATTCGGTGAACAAATATTTCGAATGACTGCTGCTTGTATATAATAC
ATCCGTAATAACAATTTTCGGAATGAATTTTTCGGCCTATCCGAAAAAAA
AGGAACGGACTGGATCCTTAAATATAGCCTCTTCATTTGTTATTATTTTG
TTACCTTAGATACCATACGCCATGGCAACCGAACCGAGTAGCCTTGCCAA
CTTGTATCAAGATATGGACGATATCGCGAAATGTTTCGGCCACATCGTAC
ATAATATTATCAATAATTCAACCGATTTCGATGTTCTCGATTTCGCAAAC
CATGATTTGTACTTGAGCGAAGCCTATTGTTTGTTGTGGCAAAATGCGGA
AACGGGAGAAGTTGATGGACGGCGGGTTGGATTACCGCTAAAGATTGGTG
TTTTGGCGGCGCTTTTTATTGATCTACACGCCAGCGGAATGATTGATGTT
TTCATGTCGCCTGATGAGGATGAACCGATGTTTCGCGTTTTGGATACGCA
TTCAACACAAACTTTCTTAGATTTTGCCATTTTTGATAGTCTGAGAGTCG
CCAATGCTCAAGGTCGGCTCCGCGAGGCCAAATTATGGAAATGGCTCTTA
AGAGCCGAAGACGCGGATTGTGTTGAGAACACGTTTGAGAGTTTGATGGC
GCGTGGTATTTTGAAAGAGAAATCAAGCGGTTTCCTTGGTCTTTTTAAAA
AGTTTCCAACCGTGAACCCTGAACCAGAACGAACGTTGGAAAAGAAAATT
AAAGATATTGTTTTTAATGATCATAAACTTGACAGTTATATGTTATCATT
GTTGATTTTGAGTCGAGAGAGCGATCGTATTTTCATGTGTGAAGATCCTA
TCTTGAGGAAACATTTCACGTCGGCGGAATATACAATGGCCAAAAAGAAC
CTGGACCGGATCTTGTTAGGCCGATTATCATTAGATTGAGTTTTTAATCC
TTTTTTATATATTATACATTAAAGGAAGAGATTTTGGCGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038204XLOC_038204Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060836-exon-scaffold_349-1575043694:144746..144902TCONS_00060836-exon-scaffold_349-1575043694:144746..144902Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1575043694:144249..144469TCONS_00060836-exon-scaffold_349-1575043694:144249..144469Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1575043694:138061..138893TCONS_00060836-exon-scaffold_349-1575043694:138061..138893Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1510915933:144746..144902TCONS_00060836-exon-scaffold_349-1510915933:144746..144902Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1510915933:144249..144469TCONS_00060836-exon-scaffold_349-1510915933:144249..144469Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1510915933:138061..138893TCONS_00060836-exon-scaffold_349-1510915933:138061..138893Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1491911889:144746..144902TCONS_00060836-exon-scaffold_349-1491911889:144746..144902Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1491911889:144249..144469TCONS_00060836-exon-scaffold_349-1491911889:144249..144469Clytia hemisphaericaexon
TCONS_00060836-exon-scaffold_349-1491911889:138061..138893TCONS_00060836-exon-scaffold_349-1491911889:138061..138893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:138061..144902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.40573	2.9654	4.97339	7.85996	20.5045	23.3178	30.8426	32.5346	13.392	14.7431	14.5952	11.2514	10.751	8.63466	12.8547	10.0889	12.4287	11.1792	5.02848	7.66616	12.414	11.4729	6.19856	8.8053	24.3162	23.6348	3.70644	4.94452	4.17009	6.87762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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