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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060831 ID=TCONS_00060831|Name=TCONS_00060831|organism=Clytia hemisphaerica|type=transcript|length=638bp
cCGAGGATTATGGGATATGCCAgaGCAAACGAGGTGTTGTTAGCTGGGCG
TAAACTGACCGCCCAAGAAGCTTTTGATCGCGGTCTTGTCACTGATATCA
TACCACAAGGAGAATTCCGTGAATTCATTGCAGAAAAAACCAAATATCTC
GCTGGATTGCCACCTAAGAGTGTGATGTATTCAAAGGCTTTGAACCGATT
ACGCGAGAAGGAAACGTTAGAACGCGTCAACGAGGAAGAGTGCGTTCGAT
TAGAAGAACGGTGGCTTTCTGAAGAGTGCATGAACGCTGTCATGTCCTTC
CTGGCGAAAAGTTCTAAAATGTAAAGAAATGCAGTTGAAAATTCTCTTCT
TCTTGATATGCGTGAGTCAAGATGCTGTTATATTTTCTAACGGAATCAAC
CGAAAAAGCCGAATTTTTTACAGATTTTGTCAAATCCTggttttttcggg
tgtttccgttaGAAAAATACGCATATCGAGAATATGATTTGATACCAAAG
GAATTGGCATGTGAGCCGtatttgaagggacataaactaAAACCACATTG
TTCTTGCCTGTACTCTAAAGGTTTAAAAAGTTCTAGTTCCTTCTTTGTTA
GAAGCTTTATGAGGTGGCGTAAACGCACGACACTGTAC Run BLAST on NCBI transcript from alignment at scaffold_349:110822..115111- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060831 ID=TCONS_00060831|Name=TCONS_00060831|organism=Clytia hemisphaerica|type=transcript|length=4290bp|location=Sequence derived from alignment at scaffold_349:110822..115111- (Clytia hemisphaerica)
CCGAGGATTATGGGATATGCCAGAGTATGTTTTCTTTGATCTCATTTCCT
TATATAGTGGACTCTGTTATTTGAATCTTTTTATAATTCTCAGATTCTGT
CAAGAAGCCTCAATCTGGAAATTCTATCTATTATACCAGAGTATGATTTC
TTTGATATCATTTTCTCGGTTATAAAGTGGACTCACTATTTCGAACTTCT
ATTATTCGAATCTTTTTATTATTCAAAATGATTCTCAGTTCCTGTCAGGG
AGTCTCAATCTGGAAATTCTATCTATCATTCGAATCTACGTTGCTGTTAA
GGCTCTAATGGCTTTAACACTTTAATGAAAAGTGTTGACTTTTTAACACC
TGAATTATGTATGCCCGTTTTCTTTTTAGGCAAACGAGGTGTTGTTAGCT
GGGCGTAAACTGACCGCCCAAGAAGCTTTTGATCGCGGTCTTGTCACTGA
TATCATACCACAAGGAGAATTCCGTGAATTCATTGCAGAAAAAACCAAAT
ATCTCGCTGGATTGCCACCTAAGGTAAATTAAGTGAAATTTTCCTTTGCT
GTGTAGAATAGACCTTTTCATAAAATTACGTTAAGAACATCACTTGCCTC
GTTTTGAAATTATTGCCATGGTTATTAACTCCCAGCGGATTTTATCAAAA
CTACTTCCTATTCATAAAAAAATCATTTAATGTCTCAAGAGACATAATCA
CCATGGTAATTATTTGAATACGTGGCAAGTGATGTTTATGACGTACTTAA
GGCGTACAAACTTTCGCGAGTAGAAACTTTTGCGAGAACGAAAAATTTAC
TTTCGCGAATTTAACGGAAAAATATTTTTCGCGAGCATAAACTTTCGCGA
ATCAAGACGTAAAATTGAGAATTTTCACATGAAAAAATTTCTTAGAGGGA
CAAATACTTCTTGGATTGGCTTGAAACATTTGTCCTTTGACTTATTAGTC
TTTTAGTAGGCTAAAAAGTGCCATAAAAGTTACATTTTATTCAAAGTTTG
AAGTTTTACAGATTTTCTATTTCGTCAAGAATTTTTGGCGAGCATAAACT
TTCGCGAATGGCCCTTCCTATAATTTTTAAAGACATTTACTTTCGCGAAA
AGGGCCAAAATTCGCGAAAGTTTCTGCTCGCCAAAGTTTGTACGCCTAAA
GTATTGCGAGCCTGATACAGGGGTAGACACTTGCTTATAAAAACATGTAT
GTGTCTTGGCAGTCTTGTTTACTATACATTACCTCGTAGAGAACTCTTGA
AGAATATTTCAACTTATAACACCTAATACAGTGTATCCGGAACAAAGCGG
TGGAACACGATTCATATAAACAAAAAATCTTGATAATTTATACCAATCTT
AACCTTATGCTCATTTTGATGGCGCCTTTGTGAATGGAATGGTTATTGAT
TGGACAAAGAAACTTCGATGCCATTTCAATCATTCTAAGCTCCAGTAGGC
TCCAGTGACATAATGAGTTTAGAGGATTTAATTTTATATAAGATTTGTTT
CCTTTTTTTTTTTGAGAGAGACACTGTGTATGTGTTTACCATTTTATAAG
TCATTCTCGTTTTCAGTGGTCACCCAAAAAAATTACAATTTCTGGAAGAT
TTTTACCTTGAAAAACTAGTATACCTTTTGCTAATCACGATGTCATATTG
AATAATTTAAAAACTCCAGCCAATTCAAGCATCAAAACAATAAAACAAAA
AACTTGGTACACGATTTAACTACATATTCCTCAGTGTTTAATTGTTTTGA
TGCTGGAGTTTTGAATTATTCAACATGACAGCGTGATATGCCCTTTCATG
AATTATTTTAAGTGAAACGACTGCCTCGTTTTGAAGCCATTGTTACCAAG
GTGATTAAATCCCTTGAGTTTTCAAATGTCTAACAGTAGACTTCTTCAGT
TGGGAATCATAATAGCATTATTTTAAAAACGAAGTAAGCGTTGTTCGTGA
CGTAATTTGGTTCACCCAATGAATCATNTTTATTTTAAAAACGAGGTATG
CGTTGTTCGTGACGTAATATGTCTATTAGCAAAAGGTTAGTTGGTTCACC
CAATGAATCATTTTTTTTAATTCTTCCTTTACTGTCCTAAAGGACTTAAA
GACTACTAGCTGTATGCGCAGCGTCGCACGCTGCGTGTCCCATTCCAGTG
AATCACTACACATCTAAAAAATTCGAACGGCAGAAAGATAGCCACCGATT
GATGATTTGATTTTGATTTTAGGAAGTAAAGGAGAAAGAAGATAACATTG
CATTGTAATTTTTAACCACAATTAAATAATGGCTTAACAAAAGTATATTT
TAGATCCTTTTAGCCATCGTGGCTATCCCATTGAGTTTCAAGCCCGGAGG
GCTAGAGGTCAATCTCTAACCTTTCTCAGGCAAGAAAAATTGAAGCCTTA
AAATATTTGCCGTATTTTTGATGACGGATTGAATCTAGCAATTCCTTTGT
TTTCGAGTGATATTTTTTTTCGAAATTAAGTGGTAAATTTTAGTTTCAAT
CTATCATTTGTGTAAAAACCAGGCGGGTCGCTCAAGACCGCGCAACTTTG
GTAGGATTTGTTGGCTTCAAATCCTACCAAAGAGATTGACCTCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAAAAGACCAAAGGTCAAACCGGGCGGCAAAATATTATACAAAAATG
TTTTGAAAAGTTTTGAAAGTGATAGGGAGCCGCTATTGTAAACAGAAAGT
TTAGATTTTCAAAAACTTTTTACAAAATGTTGTAAACACACACGTTTAAG
CGTATTAATATATAGAAGATTGACTTCCAAACCCGAAGGGCTAGACTCGA
GACTCGTGGATGGGAAATGAAGCCACTTATCTCCCCTCCAGAACGCCCCC
GCGTAGTTTTTACACAAACGCCGGATTGAAAGTAAAATCTATCGCAGTCC
TCAAAAACAAAGGAACCGCTAGATACAATCCGTCGTCATTATTGCGGCGC
GTTCTAGAAGCGTTCTGGATGGGAAATAAGTGGCTTCACTTTTTCCTGCC
TGCGAAAGGTTAGAGATTTACTCTAGCCCTTCGGGCTTCAAACTCAATGT
TATTTTCTTATTATCTACAGAGTGTGATGTATTCAAAGGCTTTGAACCGA
TTACGCGAGAAGGAAACGTTAGAACGCGTCAACGAGGAAGAGTGCGTTCG
ATTAGAAGAACGGTGGCTTTCTGAAGAGTGCATGAACGCTGTCATGTCCT
TCCTGGCGAAAAGTTCTAAAATGTAAAGAAATGCAGTTGAAAATTCTCTT
CTTCTTGATATGCGTGAGTCAAGATGCTGTTATATTTTCTAACGGAATCA
ACCGAAAAAGCCGAATTTTTTACAGATTTTGTCAAATCCTGGTTTTTTCG
GGTGTTTCCGTTAGAAAAATACGCATATCGAGAATATGATTTGATACCAA
AGGAATTGGCATGTGAGCCGTATTTGAAGGGACATAAACTAAAACCACAT
TGTTCTTGCCTGTACTCTAAAGGTTTAAAAAGTTCTAGTTCCTTCTTTGT
TAGAAGCTTTATGAGGTGGCGTAAACGCACGACACTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060831-exon-scaffold_349-1575043694:115088..115111 | TCONS_00060831-exon-scaffold_349-1575043694:115088..115111 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1575043694:114589..114732 | TCONS_00060831-exon-scaffold_349-1575043694:114589..114732 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1575043694:110822..111291 | TCONS_00060831-exon-scaffold_349-1575043694:110822..111291 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1510915933:115088..115111 | TCONS_00060831-exon-scaffold_349-1510915933:115088..115111 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1510915933:114589..114732 | TCONS_00060831-exon-scaffold_349-1510915933:114589..114732 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1510915933:110822..111291 | TCONS_00060831-exon-scaffold_349-1510915933:110822..111291 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1491911889:115088..115111 | TCONS_00060831-exon-scaffold_349-1491911889:115088..115111 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1491911889:114589..114732 | TCONS_00060831-exon-scaffold_349-1491911889:114589..114732 | Clytia hemisphaerica | exon |
| TCONS_00060831-exon-scaffold_349-1491911889:110822..111291 | TCONS_00060831-exon-scaffold_349-1491911889:110822..111291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:110822..115111 - |
Blast
BLAST of TCONS_00060831 vs. Swiss-Prot (Human)
Match: ECI2 (Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4) HSP 1 Score: 103.99 bits (258), Expect = 5.195e-26 Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 1 PRIMGYARANEVLLAGRKLTAQEAFDRGLVTDIIPQGEFREFIAEKTKYLAGLPPKSVMYSKALNRLREKETLERVNEEECVRLEERWLSEECMNAVMSFLAKSSKM 321
P+IM A+A E+L+ G+KLTA EA +GLVT++ P F++ + + K A LPP ++ SK + R RE+E L VN EEC L+ RWLS+EC NAV++FL++ SK+
Sbjct: 288 PKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 394
The following BLAST results are available for this feature:
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