TCONS_00060828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060828
Unique NameTCONS_00060828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060828 ID=TCONS_00060828|Name=TCONS_00060828|organism=Clytia hemisphaerica|type=transcript|length=1799bp
gccatttttattttaaaatacaaaggtaatgaaataaataaataaaataa
aaaaacatggtGGCATCTAATGGTACTTCTACTCACACCAATGAAACAGA
TACAGAAAACCGGATATTTATGGATTACAATGCTACAACACCACTTGCTC
CTTCAGTTATCAAGGTGATTGGGTCATCTCTGGTCACTGGATGGGCTAAC
CCAAGTAGCTCATATCAAATTGGTGTCAAGGCTAAACAAATGATTACAGA
GGCTAGACATCACTTGCTCAAAATGATTAATGgtAGCAAAGAATCTGAGT
TGACCTTCACATCTGGTGGTACAGAAGCAAACAATCATATGATCTGGATG
GCTTGCaagtatttcaatgaatttcataAAGAACACAATTGTATCAATCC
CAAGAAGCCGCATATCATCACTTCTTGTATCGAACACGATTCCATTCTAA
ACCCATTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTTACGTC
AATGTTTCAAAAGAGCATGGATTTGTTGACCCAGATGACGTGTTGCAGGA
GATTCGAGATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAACGAGA
CTGGTGTTATTCAGAAAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTG
TCAAGACGAGATGATTTACCAAGGATTGTGCTTCACACTGATGCTGCACA
GACCATTGGCAAAATACCAGTCGATGTCCAAGAATTGAATGTGGATTATT
TAACCATTGTCGGACACAAATTTTATGGACCTCGGATTGGTGCATTTTGG
GTCAGAGATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGGTCAAGA
GTGTGGCAGACGTGCTGGCACAGAAAACACACCCATGATTACAGGTCTTG
GGGAAGCTGCAAGATTggtttgtcaaaatttgaagacagaTACCGAATAT
TTGAGAAGTATCAGAGACTATCTCATTCAGAGATTACGTCAAGAAGTTGG
TGCAGAAAACATCCAAGTTAATTGTGGTCACGTCTCTTCTCGATTGCCCA
ACACAGCTAATATATCATTCATCAATTCTAAGCTTGATGGTCGAGGCATT
TTAGCTCGATGCTCTAGACTAGCGGCCAGTGTTGGGGCTGCATGTCATAC
TGATTGTGGTGCTCAAGCCTCTGGGATATTGCTTGCTCATCACGTCACTT
TTGAGATTGCAATAAAAGCTGTTCGTTTGAGTGTTGGTCGACACACAACC
AAAGAAGAGGTTGATATCACAGTCCAAGATTTGAAACAAGCTattttatc
ttgattttttgcttataccttttaagtggattaattttcgcgagtaGATT
ATTTTTTTGCGAGCACAGAAAATGAACATTTTCGCGGTGATAGAATTTCG
TGAATCAGCCGGTTTTGACCTAATATCTTTTATTTTCCTAGGtggatttc
gcgaatttcgtgaatccaaaaattaaaaattttcgcgagctttaaatttc
ttgaaactcgcaaaatttaatcctcgTGTAAATTAATCCACTTCAATAGG
ACTATCCATTATTCAAATGACTAGATCAAGTTGTGCGTATGTACATTTCG
TATCAACCTGCCCACGCTTTGAATTTAGAATGCTATTCAAACTAACTATG
TCAATTAGACATAATTTTAAAGATCTTTTCTGTCCTTTGTCAttcttttg
gaaatattttacccatacaatatattatacgtatttttagttttatagTT
CAGTTGCACTGAGATTATACTTACCTAGACATTgctattttaaaaatta
Run BLAST on NCBI

protein sequence of TCONS_00060828-protein

>TCONS_00060828-protein ID=TCONS_00060828-protein|Name=TCONS_00060828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MVASNGTSTHTNETDTENRIFMDYNATTPLAPSVIKVIGSSLVTGWANPS
SSYQIGVKAKQMITEARHHLLKMINGSKESELTFTSGGTEANNHMIWMAC
KYFNEFHKEHNCINPKKPHIITSCIEHDSILNPLKELEREGRVDVTYVNV
SKEHGFVDPDDVLQEIRDETVLVTLMMANNETGVIQKVAEICKRIKALSR
RDDLPRIVLHTDAAQTIGKIPVDVQELNVDYLTIVGHKFYGPRIGAFWVR
DGLPYFPMMLGGGQECGRRAGTENTPMITGLGEAARLVCQNLKTDTEYLR
SIRDYLIQRLRQEVGAENIQVNCGHVSSRLPNTANISFINSKLDGRGILA
RCSRLAASVGAACHTDCGAQASGILLAHHVTFEIAIKAVRLSVGRHTTKE
EVDITVQDLKQAILS
Run BLAST on NCBI

transcript from alignment at scaffold_349:92548..96916-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060828 ID=TCONS_00060828|Name=TCONS_00060828|organism=Clytia hemisphaerica|type=transcript|length=4369bp|location=Sequence derived from alignment at scaffold_349:92548..96916- (Clytia hemisphaerica)
GCCATTTTTATTTTAAAATACAAAGGTAATGAAATAAATAAATAAAATAA
AAAAACATGGTGGCATCTAATGGTACTTCTACTCACACCAATGAAACAGA
TACAGAAAACCGGATATTTATGGATTACAATGCTACAACACCACTTGCTC
CTTCAGTTATCAAGGTGATTGGGTCATCTCTGGTCACTGGATGGGCTAAC
CCAAGTAGCTCATATCAAATTGGTGTCAAGGCTAAACAAATGATTACAGA
GGCTAGACATCACTTGCTCAAAATGATTAATGGTAACATACATATTTTTG
TTATAAGCATGACATTTATAAGCATATTGAGCCCTGGATATAAAAAATAA
ACAAATCATTAGCATATCAGCGAGCTTTGGTTATTGGTCATTGGTCATGG
GTTGTGTACTTGGGAAGGTTCATTTTTTCTTTCCATTTTTAATCATCCAA
TATTTTTTTCAGGAAAATATCACATGCATAATTTGAGCTTGATTCCAAAA
TATAGCTTAAGCATAACTGAGCCTGTTTTCTGAAGAAAAGGTTATAAAAA
CGCTTATACAAAGTCCACCCCTCTTGTATGGAAATGAAATGTAACAGCCC
ATTGTGAAAAAGACTTTCTGGGAGAATTATTTTTTGTATTTTTAGGTAGC
AAAGAATCTGAGTTGACCTTCACATCTGGTGGTACAGAAGCAAACAATCA
TATGATCTGGATGGCTTGCAAGTATTTCAATGAATTTCATAAAGAACACA
GTAAGATTATCTCAAATCAACTACTTTAAGTGGATTAATTTTGGCGGGGA
TTAAATTTGGCAAATTTGGTGAATTTTGACAAAAATCGCTAAATTAAATC
CTTGCTAAAATATTACAAATCGTTCATTCGTCAAATCAAATCCCGGCCAA
ATCTTTTTAGGATAGAATTATTTCTATGGAAATTATGCATTTTTTTAGTT
AAATACTACGTAATCTTTGATGCACCAGAGCCTAAAGCCTTCCCATCTCC
TAAATTAAATCCCCGCAAAATTTTAGAAAATTTAATTTTAATTTTCACCA
AATTAAACCCTCGCGAAAATCTCTAAATCACTAAATTAAGTCCACTTCAG
AACTAATCCACTTAAAAAGGGTCATTGCAGAGAAGCCACGATTGCTCTTT
TAATGTGAAAAAGCTTTTAAATTAAAATTGATGAGTAAGCAAACGGTAAC
ACTCTTAATTAAAAACAAAAGCTTTAAAGTTCGCTGTTTCATATTTGTAT
CTTCATATTGGATGACCACTAATAAAATTTTTTATCCAATCAGATCGTAT
AAATTCCAAGAAGTAAGCAAACGGTAACACTTTGAAATTAAAAACAAAAG
CTTTAAAGTTTGCTGTTTCATATTTGTATCTTCATATTAGATGACCACTA
ATAAAAACTTTTTATCAAATCAGATTGTATCAATCCCAAGAAGCCGCATA
TCATCACTTCTTGTATCGAACACGATTCCATTCTAAACCCATTGAAAGAG
TTGGAAAGAGAAGGTCGAGTGGATGTTACTTACGTCAATGTTTCAAAAGA
GCATGGATTTGTTGACCCAGATGACGTGTTGCAGGAGATTCGAGATGAAA
CAGTCTTGGTGACTTTAATGATGGCTAATAACGAGACTGGTGTTATTCAG
GTTTCCTTTTATTTCATATTAGCCAGGGAACACGGTAAATTATTGAAAAA
AAATGATATCACATAACAGAGCATTAGGTTCGCAATCTTTAGAATTTTAA
GGTTTTCAAGTCGAGCCTTCGGACTAACAAAAAAACCATAACAGCATCAT
CTATTATTAAATATTTTGAAAATTTTCCCTTTTATGACTTGACTCGTTTT
AGGTATTCAAAGTTTCTTACTTATCTTGTAATATAAAAGTTTTTATTGGT
GTTTTCAAACACCAAACCATCGCGGCTATTAGTGGTTACGCCATCTTTTT
TTCCAATTTTCTCTCCTGTATCTAGAATATATTCCCTACCTTTCTCTTGT
TATATTCATGTTTTGACATTAGAAAGTTGCCGAAATCTGCAAACGTATCA
AAGCTTTGTCAAGACGAGATGATTTACCAAGGATTGTGCTTCACACTGAT
GCTGCACAGACCATTGGCAAAATACCAGTCGATGTCCAAGAATTGAATGT
GGATTATTTAACCATTGTCGGACACAAATTTTATGGACCTCGGATTGGTA
GACTACCTACATGTTATTTTATAAGATCAACCAAAAATTTTGAAGCCTTC
GGATGTTCTCTGAGTTTTAATCCTAAAAATGTTCTTAATATGTTCTTATT
TTCATCTTGTCCATTTTCCTAGGAAATCGGGTGTTTTAAGGTCCACAAAG
CCCTAAAATGTTCTTAACTTGTTCTTAAGATTTTGGCCATTGAAGCCTTA
CGTTCTTACATAGTCTGTTCTTGTTAAAAAGTGTGTGCTCTATCTGTAAT
ATTTCTGAAAGGTTTTCCCCAAAGATCCTTTAGAATTAAAGTTATTCCAG
GTTACATCTTCATGAAATCAAAAATCCTACAAAACACAATAAAAATACTT
AAAAGAACAAGTTCTACAACAGTTGTTACTATATTTACCTTACTAAATTA
GATCATCATTAAAGTTTTAAAAAGTAATTATTTCCAGCACCTATTTTCTC
TTCACCTACTCATGTATAAAACTTGTTCTTTTCTTTACAATATCCTTTGT
TTTCAGGTGCATTTTGGGTCAGAGATGGACTCCCATATTTCCCCATGATG
CTTGGCGGTGGTCAAGAGTGTGGCAGACGTGCTGGCACAGAAAACACACC
CATGATTACAGGTCTTGGGGAAGCTGCAAGATTGGTTTGTCAAAATTTGA
AGACAGATACCGAATATTTGAGAAGTGTAAGTAATAAACAGACAACCCCA
TCCACTGACTGTTGAAATTTTACAATCTTCCATTTTACTAGATAAAGAAT
TCTTTAGGCATACAAACTTTCGCGAGCAGAAATTTTCGCGAGGTCGAATA
ATCTGGAATAATCGCCAAATTCACGACATTTACTTTTGCGAGTTTAACGA
AAATTTATTTTTCGCGAGCATAAACTTTCCCGAATGAGACATACTTTAGT
AGAAAATTAAAGTTTTCGTTGCATGAAACCCAGTGTTTTGATCGTTCAAA
TGTACTCAAACCACAATTGATGGACTAAATAATTTCTACACTAAATGCTA
TCCTTGTTGTCATCAAAGAGGAAAAATTGAGTAAATTTTTTCTTTTTAGA
TTTTATTTCGCGAGCATAAACTTTCGCGAATTACCCTTTCAAGAATTTTC
GCCCTTTCGCGAAAAGGGTAAAATTCGCGAAAATCGTGAAGGTTTGTACG
CCTAAAGTAAATCCAGTTATTTTTTTCTAGTGAAAATACTCGTTTGTAAA
GCAAATTTTTTTACTTTAGTTTTTTTTTCGTCTATGTTATTGATTGATTG
AAATGATGAAGATCCCTTTTATTGATGCCCGATTATCTTTATGCAATTTC
ATGATTTTGTTAATACTATTTTTCAACAGATCAGAGACTATCTCATTCAG
AGATTACGTCAAGAAGTTGGTGCAGAAAACATCCAAGTTAATTGTGGTCA
CGTCTCTTCTCGATTGCCCAACACAGCTAATATATCATTCATCAATTCTA
AGCTTGATGGTCGAGGCATTTTAGCTCGATGCTCTAGACTAGCGGCCAGT
GTTGGGGCTGCATGTCATACTGATTGTGGTGCTCAAGCCTCTGGGATATT
GCTTGCTCATCACGTCACTTTTGAGATTGCAATAAAAGCTGTTCGTTTGA
GTGTTGGTCGACACACAACCAAAGAAGAGGTTGATATCACAGTCCAAGAT
TTGAAACAAGCTATTTTATCTTGATTTTTTGCTTATACCTTTTAAGTGGA
TTAATTTTCGCGAGTAGATTATTTTTTTGCGAGCACAGAAAATGAACATT
TTCGCGGTGATAGAATTTCGTGAATCAGCCGGTTTTGACCTAATATCTTT
TATTTTCCTAGGTGGATTTCGCGAATTTCGTGAATCCAAAAATTAAAAAT
TTTCGCGAGCTTTAAATTTCTTGAAACTCGCAAAATTTAATCCTCGTGTA
AATTAATCCACTTCAATAGGACTATCCATTATTCAAATGACTAGATCAAG
TTGTGCGTATGTACATTTCGTATCAACCTGCCCACGCTTTGAATTTAGAA
TGCTATTCAAACTAACTATGTCAATTAGACATAATTTTAAAGATCTTTTC
TGTCCTTTGTCATTCTTTTGGAAATATTTTACCCATACAATATATTATAC
GTATTTTTAGTTTTATAGTTCAGTTGCACTGAGATTATACTTACCTAGAC
ATTGCTATTTTAAAAATTA

Coding sequence (CDS) from alignment at scaffold_349:92548..96916-

>TCONS_00060828 ID=TCONS_00060828|Name=TCONS_00060828|organism=Clytia hemisphaerica|type=CDS|length=7488bp|location=Sequence derived from alignment at scaffold_349:92548..96916- (Clytia hemisphaerica)
ATCAGAGACTATCTCATTCAGAGATTACGTCAAGAAGTTGGTGCAGAAAA
CATCCAAGTTAATTGTGGTCACGTCTCTTCTCGATTGCCCAACACAGCTA
ATATATCATTCATCAATTCTAAGCTTGATGGTCGAGGCATTTTAGCTCGA
TGCTCTAGACTAGCGGCCAGTGTTGGGGCTGCATGTCATACTGATTGTGG
TGCTCAAGCCTCTGGGATATTGCTTGCTCATCACGTCACTTTTGAGATTG
CAATAAAAGCTGTTCGTTTGAGTGTTGGTCGACACACAACCAAAGAAGAG
GTTGATATCACAGTCCAAGATTTGAAACAAGCTATTTTATCTTGAGTGCA
TTTTGGGTCAGAGATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGG
TCAAGAGTGTGGCAGACGTGCTGGCACAGAAAACACACCCATGATTACAG
GTCTTGGGGAAGCTGCAAGATTGGTTTGTCAAAATTTGAAGACAGATACC
GAATATTTGAGAAGTAAAGTTGCCGAAATCTGCAAACGTATCAAAGCTTT
GTCAAGACGAGATGATTTACCAAGGATTGTGCTTCACACTGATGCTGCAC
AGACCATTGGCAAAATACCAGTCGATGTCCAAGAATTGAATGTGGATTAT
TTAACCATTGTCGGACACAAATTTTATGGACCTCGGATTGATTGTATCAA
TCCCAAGAAGCCGCATATCATCACTTCTTGTATCGAACACGATTCCATTC
TAAACCCATTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTTAC
GTCAATGTTTCAAAAGAGCATGGATTTGTTGACCCAGATGACGTGTTGCA
GGAGATTCGAGATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAACG
AGACTGGTGTTATTCAGGTAGCAAAGAATCTGAGTTGACCTTCACATCTG
GTGGTACAGAAGCAAACAATCATATGATCTGGATGGCTTGCAAGTATTTC
AATGAATTTCATAAAGAACACAATGGTGGCATCTAATGGTACTTCTACTC
ACACCAATGAAACAGATACAGAAAACCGGATATTTATGGATTACAATGCT
ACAACACCACTTGCTCCTTCAGTTATCAAGGTGATTGGGTCATCTCTGGT
CACTGGATGGGCTAACCCAAGTAGCTCATATCAAATTGGTGTCAAGGCTA
AACAAATGATTACAGAGGCTAGACATCACTTGCTCAAAATGATTAATGAT
CAGAGACTATCTCATTCAGAGATTACGTCAAGAAGTTGGTGCAGAAAACA
TCCAAGTTAATTGTGGTCACGTCTCTTCTCGATTGCCCAACACAGCTAAT
ATATCATTCATCAATTCTAAGCTTGATGGTCGAGGCATTTTAGCTCGATG
CTCTAGACTAGCGGCCAGTGTTGGGGCTGCATGTCATACTGATTGTGGTG
CTCAAGCCTCTGGGATATTGCTTGCTCATCACGTCACTTTTGAGATTGCA
ATAAAAGCTGTTCGTTTGAGTGTTGGTCGACACACAACCAAAGAAGAGGT
TGATATCACAGTCCAAGATTTGAAACAAGCTATTTTATCTTGAGTGCATT
TTGGGTCAGAGATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGGTC
AAGAGTGTGGCAGACGTGCTGGCACAGAAAACACACCCATGATTACAGGT
CTTGGGGAAGCTGCAAGATTGGTTTGTCAAAATTTGAAGACAGATACCGA
ATATTTGAGAAGTAAAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTGT
CAAGACGAGATGATTTACCAAGGATTGTGCTTCACACTGATGCTGCACAG
ACCATTGGCAAAATACCAGTCGATGTCCAAGAATTGAATGTGGATTATTT
AACCATTGTCGGACACAAATTTTATGGACCTCGGATTGATTGTATCAATC
CCAAGAAGCCGCATATCATCACTTCTTGTATCGAACACGATTCCATTCTA
AACCCATTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTTACGT
CAATGTTTCAAAAGAGCATGGATTTGTTGACCCAGATGACGTGTTGCAGG
AGATTCGAGATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAACGAG
ACTGGTGTTATTCAGGTAGCAAAGAATCTGAGTTGACCTTCACATCTGGT
GGTACAGAAGCAAACAATCATATGATCTGGATGGCTTGCAAGTATTTCAA
TGAATTTCATAAAGAACACAATGGTGGCATCTAATGGTACTTCTACTCAC
ACCAATGAAACAGATACAGAAAACCGGATATTTATGGATTACAATGCTAC
AACACCACTTGCTCCTTCAGTTATCAAGGTGATTGGGTCATCTCTGGTCA
CTGGATGGGCTAACCCAAGTAGCTCATATCAAATTGGTGTCAAGGCTAAA
CAAATGATTACAGAGGCTAGACATCACTTGCTCAAAATGATTAATGATCA
GAGACTATCTCATTCAGAGATTACGTCAAGAAGTTGGTGCAGAAAACATC
CAAGTTAATTGTGGTCACGTCTCTTCTCGATTGCCCAACACAGCTAATAT
ATCATTCATCAATTCTAAGCTTGATGGTCGAGGCATTTTAGCTCGATGCT
CTAGACTAGCGGCCAGTGTTGGGGCTGCATGTCATACTGATTGTGGTGCT
CAAGCCTCTGGGATATTGCTTGCTCATCACGTCACTTTTGAGATTGCAAT
AAAAGCTGTTCGTTTGAGTGTTGGTCGACACACAACCAAAGAAGAGGTTG
ATATCACAGTCCAAGATTTGAAACAAGCTATTTTATCTTGAGTGCATTTT
GGGTCAGAGATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGGTCAA
GAGTGTGGCAGACGTGCTGGCACAGAAAACACACCCATGATTACAGGTCT
TGGGGAAGCTGCAAGATTGGTTTGTCAAAATTTGAAGACAGATACCGAAT
ATTTGAGAAGTAAAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTGTCA
AGACGAGATGATTTACCAAGGATTGTGCTTCACACTGATGCTGCACAGAC
CATTGGCAAAATACCAGTCGATGTCCAAGAATTGAATGTGGATTATTTAA
CCATTGTCGGACACAAATTTTATGGACCTCGGATTGATTGTATCAATCCC
AAGAAGCCGCATATCATCACTTCTTGTATCGAACACGATTCCATTCTAAA
CCCATTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTTACGTCA
ATGTTTCAAAAGAGCATGGATTTGTTGACCCAGATGACGTGTTGCAGGAG
ATTCGAGATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAACGAGAC
TGGTGTTATTCAGGTAGCAAAGAATCTGAGTTGACCTTCACATCTGGTGG
TACAGAAGCAAACAATCATATGATCTGGATGGCTTGCAAGTATTTCAATG
AATTTCATAAAGAACACAATGGTGGCATCTAATGGTACTTCTACTCACAC
CAATGAAACAGATACAGAAAACCGGATATTTATGGATTACAATGCTACAA
CACCACTTGCTCCTTCAGTTATCAAGGTGATTGGGTCATCTCTGGTCACT
GGATGGGCTAACCCAAGTAGCTCATATCAAATTGGTGTCAAGGCTAAACA
AATGATTACAGAGGCTAGACATCACTTGCTCAAAATGATTAATGATCAGA
GACTATCTCATTCAGAGATTACGTCAAGAAGTTGGTGCAGAAAACATCCA
AGTTAATTGTGGTCACGTCTCTTCTCGATTGCCCAACACAGCTAATATAT
CATTCATCAATTCTAAGCTTGATGGTCGAGGCATTTTAGCTCGATGCTCT
AGACTAGCGGCCAGTGTTGGGGCTGCATGTCATACTGATTGTGGTGCTCA
AGCCTCTGGGATATTGCTTGCTCATCACGTCACTTTTGAGATTGCAATAA
AAGCTGTTCGTTTGAGTGTTGGTCGACACACAACCAAAGAAGAGGTTGAT
ATCACAGTCCAAGATTTGAAACAAGCTATTTTATCTTGAGTGCATTTTGG
GTCAGAGATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGGTCAAGA
GTGTGGCAGACGTGCTGGCACAGAAAACACACCCATGATTACAGGTCTTG
GGGAAGCTGCAAGATTGGTTTGTCAAAATTTGAAGACAGATACCGAATAT
TTGAGAAGTAAAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTGTCAAG
ACGAGATGATTTACCAAGGATTGTGCTTCACACTGATGCTGCACAGACCA
TTGGCAAAATACCAGTCGATGTCCAAGAATTGAATGTGGATTATTTAACC
ATTGTCGGACACAAATTTTATGGACCTCGGATTGATTGTATCAATCCCAA
GAAGCCGCATATCATCACTTCTTGTATCGAACACGATTCCATTCTAAACC
CATTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTTACGTCAAT
GTTTCAAAAGAGCATGGATTTGTTGACCCAGATGACGTGTTGCAGGAGAT
TCGAGATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAACGAGACTG
GTGTTATTCAGGTAGCAAAGAATCTGAGTTGACCTTCACATCTGGTGGTA
CAGAAGCAAACAATCATATGATCTGGATGGCTTGCAAGTATTTCAATGAA
TTTCATAAAGAACACAATGGTGGCATCTAATGGTACTTCTACTCACACCA
ATGAAACAGATACAGAAAACCGGATATTTATGGATTACAATGCTACAACA
CCACTTGCTCCTTCAGTTATCAAGGTGATTGGGTCATCTCTGGTCACTGG
ATGGGCTAACCCAAGTAGCTCATATCAAATTGGTGTCAAGGCTAAACAAA
TGATTACAGAGGCTAGACATCACTTGCTCAAAATGATTAATGATCAGAGA
CTATCTCATTCAGAGATTACGTCAAGAAGTTGGTGCAGAAAACATCCAAG
TTAATTGTGGTCACGTCTCTTCTCGATTGCCCAACACAGCTAATATATCA
TTCATCAATTCTAAGCTTGATGGTCGAGGCATTTTAGCTCGATGCTCTAG
ACTAGCGGCCAGTGTTGGGGCTGCATGTCATACTGATTGTGGTGCTCAAG
CCTCTGGGATATTGCTTGCTCATCACGTCACTTTTGAGATTGCAATAAAA
GCTGTTCGTTTGAGTGTTGGTCGACACACAACCAAAGAAGAGGTTGATAT
CACAGTCCAAGATTTGAAACAAGCTATTTTATCTTGAGTGCATTTTGGGT
CAGAGATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGGTCAAGAGT
GTGGCAGACGTGCTGGCACAGAAAACACACCCATGATTACAGGTCTTGGG
GAAGCTGCAAGATTGGTTTGTCAAAATTTGAAGACAGATACCGAATATTT
GAGAAGTAAAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTGTCAAGAC
GAGATGATTTACCAAGGATTGTGCTTCACACTGATGCTGCACAGACCATT
GGCAAAATACCAGTCGATGTCCAAGAATTGAATGTGGATTATTTAACCAT
TGTCGGACACAAATTTTATGGACCTCGGATTGATTGTATCAATCCCAAGA
AGCCGCATATCATCACTTCTTGTATCGAACACGATTCCATTCTAAACCCA
TTGAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTTACGTCAATGT
TTCAAAAGAGCATGGATTTGTTGACCCAGATGACGTGTTGCAGGAGATTC
GAGATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAACGAGACTGGT
GTTATTCAGGTAGCAAAGAATCTGAGTTGACCTTCACATCTGGTGGTACA
GAAGCAAACAATCATATGATCTGGATGGCTTGCAAGTATTTCAATGAATT
TCATAAAGAACACAATGGTGGCATCTAATGGTACTTCTACTCACACCAAT
GAAACAGATACAGAAAACCGGATATTTATGGATTACAATGCTACAACACC
ACTTGCTCCTTCAGTTATCAAGGTGATTGGGTCATCTCTGGTCACTGGAT
GGGCTAACCCAAGTAGCTCATATCAAATTGGTGTCAAGGCTAAACAAATG
ATTACAGAGGCTAGACATCACTTGCTCAAAATGATTAATGATCAGAGACT
ATCTCATTCAGAGATTACGTCAAGAAGTTGGTGCAGAAAACATCCAAGTT
AATTGTGGTCACGTCTCTTCTCGATTGCCCAACACAGCTAATATATCATT
CATCAATTCTAAGCTTGATGGTCGAGGCATTTTAGCTCGATGCTCTAGAC
TAGCGGCCAGTGTTGGGGCTGCATGTCATACTGATTGTGGTGCTCAAGCC
TCTGGGATATTGCTTGCTCATCACGTCACTTTTGAGATTGCAATAAAAGC
TGTTCGTTTGAGTGTTGGTCGACACACAACCAAAGAAGAGGTTGATATCA
CAGTCCAAGATTTGAAACAAGCTATTTTATCTTGAGTGCATTTTGGGTCA
GAGATGGACTCCCATATTTCCCCATGATGCTTGGCGGTGGTCAAGAGTGT
GGCAGACGTGCTGGCACAGAAAACACACCCATGATTACAGGTCTTGGGGA
AGCTGCAAGATTGGTTTGTCAAAATTTGAAGACAGATACCGAATATTTGA
GAAGTAAAGTTGCCGAAATCTGCAAACGTATCAAAGCTTTGTCAAGACGA
GATGATTTACCAAGGATTGTGCTTCACACTGATGCTGCACAGACCATTGG
CAAAATACCAGTCGATGTCCAAGAATTGAATGTGGATTATTTAACCATTG
TCGGACACAAATTTTATGGACCTCGGATTGATTGTATCAATCCCAAGAAG
CCGCATATCATCACTTCTTGTATCGAACACGATTCCATTCTAAACCCATT
GAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTTACGTCAATGTTT
CAAAAGAGCATGGATTTGTTGACCCAGATGACGTGTTGCAGGAGATTCGA
GATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAACGAGACTGGTGT
TATTCAGGTAGCAAAGAATCTGAGTTGACCTTCACATCTGGTGGTACAGA
AGCAAACAATCATATGATCTGGATGGCTTGCAAGTATTTCAATGAATTTC
ATAAAGAACACAATGGTGGCATCTAATGGTACTTCTACTCACACCAATGA
AACAGATACAGAAAACCGGATATTTATGGATTACAATGCTACAACACCAC
TTGCTCCTTCAGTTATCAAGGTGATTGGGTCATCTCTGGTCACTGGATGG
GCTAACCCAAGTAGCTCATATCAAATTGGTGTCAAGGCTAAACAAATGAT
TACAGAGGCTAGACATCACTTGCTCAAAATGATTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038199XLOC_038199Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060828-proteinTCONS_00060828-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060828-exon-scaffold_349-1575043694:96635..96916TCONS_00060828-exon-scaffold_349-1575043694:96635..96916Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1575043694:96167..96271TCONS_00060828-exon-scaffold_349-1575043694:96167..96271Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1575043694:95267..95493TCONS_00060828-exon-scaffold_349-1575043694:95267..95493Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1575043694:94720..94894TCONS_00060828-exon-scaffold_349-1575043694:94720..94894Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1575043694:94041..94210TCONS_00060828-exon-scaffold_349-1575043694:94041..94210Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1575043694:92548..93387TCONS_00060828-exon-scaffold_349-1575043694:92548..93387Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1510915933:96635..96916TCONS_00060828-exon-scaffold_349-1510915933:96635..96916Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1510915933:96167..96271TCONS_00060828-exon-scaffold_349-1510915933:96167..96271Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1510915933:95267..95493TCONS_00060828-exon-scaffold_349-1510915933:95267..95493Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1510915933:94720..94894TCONS_00060828-exon-scaffold_349-1510915933:94720..94894Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1510915933:94041..94210TCONS_00060828-exon-scaffold_349-1510915933:94041..94210Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1510915933:92548..93387TCONS_00060828-exon-scaffold_349-1510915933:92548..93387Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1491911889:96635..96916TCONS_00060828-exon-scaffold_349-1491911889:96635..96916Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1491911889:96167..96271TCONS_00060828-exon-scaffold_349-1491911889:96167..96271Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1491911889:95267..95493TCONS_00060828-exon-scaffold_349-1491911889:95267..95493Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1491911889:94720..94894TCONS_00060828-exon-scaffold_349-1491911889:94720..94894Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1491911889:94041..94210TCONS_00060828-exon-scaffold_349-1491911889:94041..94210Clytia hemisphaericaexon
TCONS_00060828-exon-scaffold_349-1491911889:92548..93387TCONS_00060828-exon-scaffold_349-1491911889:92548..93387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:92548..96916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6327	1.96202	0.454752	0.555892	6.73067	5.26761	11.055	10.5343	6.33027	6.87023	8.90059	4.76503	5.10506	5.39836	6.70643	8.98907	7.64948	7.33585	3.58539	5.0719	4.48159	4.36086	13.3354	11.856	4.42004	6.54247	9.54498	6.15473	14.1765	14.4883
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR016454Cysteine_dSase
IPR000192Aminotrans_V_dom
IPR015422PyrdxlP-dep_Trfase_sub2
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00060828 vs. Swiss-Prot (Human)
Match: SCLY (Selenocysteine lyase OS=Homo sapiens GN=SCLY PE=1 SV=4)

HSP 1 Score: 399.053 bits (1024), Expect = 1.575e-132
Identity = 213/412 (51.70%), Postives = 274/412 (66.50%), Query Frame = 3 
Query:  105 ENRIFMDYNATTPLAPSVIKVIGSSLVTGWANPSSSYQIGVKAKQMITEARHHLLKMINGSKESELTFTSGGTEANNHMIWMACKYF--NEFHK-----EHNCINPKKPHIITSCIEHDSILNPLKELEREGRVDVTYVNVSKEHGFVDPDDVLQEIRDETVLVTLMMANNETGVIQKVAEICKRIKALSRR---DDLPRIVLHTDAAQTIGKIPVDVQELNVDYLTIVGHKFYGPRIGAFWVRDGL----PYFPMMLGGGQECGRRAGTENTPMITGLGEAARLVCQNLKTDTEYLRSIRDYLIQRLRQEVGAENIQVNCGHVSS-RLPNTANISFINSKLDGRGILARCSRLAASVGAACHTDCGAQASGILLAHHVTFEIAIKAVRLSVGRHTTKEEVDITVQDLKQAI 1295
            E +++MDYNATTPL P VI+ +  ++   W NPSS Y  G KAK +I  AR  L KMI G K  ++ FTSGGTE+NN +I    K+F  N+  K      H+ +   KPH ITS +EHDSI  PL+ L  E    VT+V VSK  G  + DD+L  +R  T LVT+M+ANNETG++  V EI +RIKAL++      LP I++HTDAAQ +GK  VDV++L VD+LTIVGHKFYGPRIGA ++R GL    P +PM+ GGGQE   R GTENTPMI GLG+AA LV QN +    ++R +RDYL +RL  E G + I +N     + RLPNT N S    +L G  +LA+C  L ASVGAACH+D G Q S +LL++ V F++A  A+RLSVGR TT+ EVD+ VQDLKQA+
Sbjct:   29 ERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRKAKDIINAARESLAKMIGG-KPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQAEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRIGALYIR-GLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAACHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAV 438
The following BLAST results are available for this feature:
BLAST of TCONS_00060828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCLY1.575e-13251.70Selenocysteine lyase OS=Homo sapiens GN=SCLY PE=1 ... [more]
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