TCONS_00060828-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00060828-protein
Unique Name	TCONS_00060828-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	415

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00060828-protein ID=TCONS_00060828-protein|Name=TCONS_00060828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MVASNGTSTHTNETDTENRIFMDYNATTPLAPSVIKVIGSSLVTGWANPS
SSYQIGVKAKQMITEARHHLLKMINGSKESELTFTSGGTEANNHMIWMAC
KYFNEFHKEHNCINPKKPHIITSCIEHDSILNPLKELEREGRVDVTYVNV
SKEHGFVDPDDVLQEIRDETVLVTLMMANNETGVIQKVAEICKRIKALSR
RDDLPRIVLHTDAAQTIGKIPVDVQELNVDYLTIVGHKFYGPRIGAFWVR
DGLPYFPMMLGGGQECGRRAGTENTPMITGLGEAARLVCQNLKTDTEYLR
SIRDYLIQRLRQEVGAENIQVNCGHVSSRLPNTANISFINSKLDGRGILA
RCSRLAASVGAACHTDCGAQASGILLAHHVTFEIAIKAVRLSVGRHTTKE
EVDITVQDLKQAILS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038199	XLOC_038199	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00060828	TCONS_00060828	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015421	PyrdxlP-dep_Trfase_major_sub1
IPR016454	Cysteine_dSase
IPR000192	Aminotrans_V_dom
IPR015422	PyrdxlP-dep_Trfase_sub2
IPR015424	PyrdxlP-dep_Trfase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	GENE3D	3.40.640.10		coord: 36..260 e-value: 4.7E-36 score: 123.6
IPR016454	Cysteine desulfurase	PIRSF	PIRSF005572	NifS	coord: 17..415 e-value: 6.6E-121 score: 401.9
IPR000192	Aminotransferase class V domain	PFAM	PF00266	Aminotran_5	coord: 20..403 e-value: 4.8E-55 score: 186.9
IPR015422	Pyridoxal phosphate-dependent transferase, subdomain 2	GENE3D	3.90.1150.10		coord: 261..414 e-value: 7.9E-30 score: 103.3
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 18..413

Blast

[Close]

BLAST of TCONS_00060828-protein vs. Swiss-Prot (Human)
Match: SCLY (Selenocysteine lyase OS=Homo sapiens GN=SCLY PE=1 SV=4)

HSP 1 Score: 400.593 bits (1028), Expect = 1.975e-137
Identity = 213/412 (51.70%), Postives = 274/412 (66.50%), Query Frame = 0

Query:   17 ENRIFMDYNATTPLAPSVIKVIGSSLVTGWANPSSSYQIGVKAKQMITEARHHLLKMINGSKESELTFTSGGTEANNHMIWMACKYF--NEFHK-----EHNCINPKKPHIITSCIEHDSILNPLKELEREGRVDVTYVNVSKEHGFVDPDDVLQEIRDETVLVTLMMANNETGVIQKVAEICKRIKALSRRD---DLPRIVLHTDAAQTIGKIPVDVQELNVDYLTIVGHKFYGPRIGAFWVRDGL----PYFPMMLGGGQECGRRAGTENTPMITGLGEAARLVCQNLKTDTEYLRSIRDYLIQRLRQEVGAENIQVNCGHVSS-RLPNTANISFINSKLDGRGILARCSRLAASVGAACHTDCGAQASGILLAHHVTFEIAIKAVRLSVGRHTTKEEVDITVQDLKQAI 413
            E +++MDYNATTPL P VI+ +  ++   W NPSS Y  G KAK +I  AR  L KMI G K  ++ FTSGGTE+NN +I    K+F  N+  K      H+ +   KPH ITS +EHDSI  PL+ L  E    VT+V VSK  G  + DD+L  +R  T LVT+M+ANNETG++  V EI +RIKAL++      LP I++HTDAAQ +GK  VDV++L VD+LTIVGHKFYGPRIGA ++R GL    P +PM+ GGGQE   R GTENTPMI GLG+AA LV QN +    ++R +RDYL +RL  E G + I +N     + RLPNT N S    +L G  +LA+C  L ASVGAACH+D G Q S +LL++ V F++A  A+RLSVGR TT+ EVD+ VQDLKQA+
Sbjct:   29 ERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRKAKDIINAARESLAKMIGG-KPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQAEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRIGALYIR-GLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAACHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAV 438

The following BLAST results are available for this feature:

BLAST of TCONS_00060828-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00060828-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCLY	1.975e-137	51.70	Selenocysteine lyase OS=Homo sapiens GN=SCLY PE=1 ...	[more]

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TCONS_00060828-protein (polypeptide) - C. hemisphaerica