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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060803 ID=TCONS_00060803|Name=TCONS_00060803|organism=Clytia hemisphaerica|type=transcript|length=835bp
TGAAACAGTCGTCGATGAGGTAGCCCCTGAAGTAGAAGCAGTCGCTGAAG
ATGCAGCCCCTGAAGTAGAAGCCGTCGTTGAGGAGGCAGCCCCTGAAGTA
GAAGCAGTCGCTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGA
GGCATCTGCTGGACCAGAGAGTAGCGTAGATGTAGGAGCCAAACAGCCAT
CGCCAGCAGCTGAACCATCCATTCCACAAGACCAAGCAGCATTCGACGTG
TACAATGCAAATTACAAATGTCCGGAATATTACAAATACGATGAATTCGC
GTTTTACGATATCGAAAACGATATGCAATCGAGTCGAATCGAGCAACCTA
GTGCCTTATAATAGTTGTTGttttaacaaagaaaattggtgtttttttag
attttgttgCTAACTTGGAACTTGTTCATACTATTTGAAATGTATATTAT
GGTGTTTGATTGTACAATAACTCAATAAATTGGATCTTATGTTCGCGTTG
AAATAATGTTTTGGGTAAATAGTAGTAGATTTTCAAACAATCTCTAGTGA
TAAACCTTGGAGATGGAAACACCATTTTGATTGATGGATGTCGCTGATTG
GTTCggtagaaatttatttttacattttagatGTATTAGGTGTTAGTCTT
TACAACGAAACTGGTAGTTTGATAGCAAACCTTTTTAAGATGAACCTAGG
TTACTTACTGTAGGTTATTAATATTTCCAAATTGTGGAAGATTGAATAGA
TGCTTATTTGAAAATTATAATGTAAATACATTACTTTTCTTAAGTAAAAC
TGAATATGTTATATGGCTGATTGCGTCGATTGATT Run BLAST on NCBI transcript from alignment at scaffold_349:783600..788885+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060803 ID=TCONS_00060803|Name=TCONS_00060803|organism=Clytia hemisphaerica|type=transcript|length=5286bp|location=Sequence derived from alignment at scaffold_349:783600..788885+ (Clytia hemisphaerica)
TGAAACAGTCGTCGATGAGGTAGCCCCTGAAGTAGAAGCAGTCGCTGAAG
ATGCAGCCCCTGAAGTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGTA
GAAGCCGTCGATGAGGAGGCAGCCCCTGAAGTAGAAGCCGTCGTTGAGGA
GGCAGCTCCTGAAGTAGAAGCAGTTGTTGAGGAGGCAGCCCCTGAAGTAG
AAGCAGTCGCTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGAG
GCATCTGCTGGACCAGAGAGTATGTTGTTAATGCTCTTAAATTTTTACGC
CCTTAATAGTTgtctttggtttgattttcCCAGCAATCTCGAGTTCGTTA
TCCTCTGATCTTTAATAAAGTGCGTCTGAACTTTGCTTTTCTTTCTCTTC
CCTTAGAAAAGGGCAAATGAATTGAACTTTAGTAACTGCTGCTTTCTTTA
TCTCCTGCGATTTTCTGAGTCCTTTTCCTAGCTCTACTTTTCCTATCCAC
TAATACTGAATACTGATAATAATTTTCTGTAATTTATTTGTCCTTTTCTA
GAACCAGAGCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaattt
ttaagtCGTCGGCAAACTCAGTTGACGGCGTAGTAGTGAAGTATGTCGTG
TTTTATCGTTATATTTAACCTTAGATTAGATTTTCAACTTGGTTGGACAT
GAATAATTCTAACGAGGGAAATCTGTATATTATTTCAACGGTTTCTTATA
TCAACTTGGCTACTTCTTCTCTTGCAATTTTAAGGGTGTCAATATTGtct
gttttttcttttcaaataacgTCATTCATCGTCAATTtacctttataaac
cctggaccaagctatttCCACCatatttgatcggagtttttatgaaagtg
gtacccgcaaagaattTATAGTTAAGATTTTGTTTGAcaacaaacggcgc
tacatcacttGCGTGCAAgcgaaagtagatctagcgctctcgatgcgggt
accactttcaaaaatattccgaTCAAAATATGTTGGTTGGCCGGGACTGA
GAAACTGCCTCCGGGGTTTATGTAAAGCTCAATCAACTATGAATTATGAA
TCATTTCTAAGTTCAACGTATTCTGATAATGTAATATCAAGTCTCAAATT
GAATGCAATCCCTCTGTATCTTTCAATGATCGGAGGGCTTCTTTGAGTCA
GTAAcgccatagtataagaaagccgcggctggaatgatgacgctattgtt
tttgtcgttAATGGATGTTTTATCTGTGTCTCCGTGATTTATAAGAACTA
AATCTAAGCTAGCAAAATCTTCAACCTGAAAAGTGTTTATAAAATTCAAT
TAAAGAATAATTACTTTTCAAGTCTTAGATTTTTCTCACTGCCCTCTAAT
TAGCTTGTTcgaagtatattcttataaattccagataaaattttaaaaat
ttaggaCCAAATAACGCACATTTTAAtacaagaactaattttcaaatgtt
aaactttGAATGCTTGCCGTCATCTCAATACTGTTGATTTTCGAATGAAG
TTTTCAAGAATACTGCTTgaatattgattttttaataTCAGTAAGAATTG
TTCAAAATAATCAGGAAGGCACTTCGAAGCACttaattttcttcaagttc
ttaaagcacTGACATTCTGTTCGCTCTAATATTTTAAACCGAAactcttt
tcttttactttgatattatgaatgcgtgaattatcaagagatttgtgttt
atgagcaaaattacgTCTTACGAGGGACTTTGTTAAAAGTCAGATTAAAT
TGACAATGGAAATTGTCATtgaaccataaaaaaattcgttcttacgacat
agatagaacaacagaaattcaactgaactcattccagccgcggctttctt
atactatggtaacGCTTTTCAGGTAATTAACGCTCATTACCATATCTAGG
CTTTGCTTACTTTTAGGTGTACACACTttcacgagcagaaactttcgcga
ggtcgaaaaatcgtaACATTNTAGTAACTGCTGCTTTCTTTATCTCCTGC
GATTTTCTGAGTCCTTTTCCTAGCTCTACTTTTCCTATCCACTAATACTG
AATACTGATAATAATTTTCTGTAATTTATTTGTCCTTTTCTAGAACCAGA
GCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaatttttaagtCG
TCGGCAACCTCAGTTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCG
TTATATTTAACCTTAGATTAGATTTTTAACTTGGACTTCAACAATTCGAA
CGGGGATATCTGTATATCGTTCCCATGATTTATATCAACTTGACTACTTC
TTTTCTTGCAGTGTTAAGGGTGTAAATATtgtctgtttttttcttttcta
ataacGTCATTCATCGTCAATTATGAATACagacctttataaaccctgga
ccaagctatttCCACCatatttgatcggagtttttatgaaagtggtaccc
gcaaGGAATTTATAGTTGAGATTTTGCCTGACTACTTCACTAGTATGCAA
taaaaagtagatctagcgctctcgatgcggGTACCACTCTCAAAAATATT
ccgatcaaaatattttggttggcCGGGACTGAGAAACTGCCTCCGGGGTT
TATGTAAAGCTCAATCAACTATGAATTATGAATCATTTCTAAGTTGAACA
TATTCTGAAAATTTAATATCAAGTCTCAAATTGAATGCATTCCCCCTGTA
TCTTTCAATGATCGGAGGGCTTCTTTGAGTCAGTAATGTTTTTCAGGTAA
TTAACACTCATTACCATATATAGGCTTTGCTTACttttaggtgtacaaac
tttcacgagcagaaactttcgcgaggtcgaaaaatcgtaacatttacttt
cgcgaatttgacaaaaaatttttcgtgagcataaactttcgcaaatgaGG
CATATTTTTAGTAGAAAATTCAAGTTTTCGGTGCATAAAACCAGTGTTTG
ACTTTCGCATAATATCTACACTAAATTTTATCCTTGTTATCATCAAGACG
TTTACTTTCGCATAAAgggctaaaattcgcgaaaatcgtgaaagtttctg
ctcgcgaaagtttgtacgcctaaagtagttgCCTGTCAACAGTAATATTG
TTAAAAGGTTTTTAGGTCGCTAATGATAAAGAATATTGTGTGAGGTATTT
CAAATGACCTGCAACTTATATAGCTCGCCTATAACACAAGACTAACTGTG
CCGTAGTGTACTCTTCAGACTTTTTCACTCAGGTTTATTTATCtcaatag
gccttttcataaattacgtcacgaacaacacttgcctcgtactcaaacaa
ttaccattgtgattatgtcccttgagacattaaatgattcttttatgaat
agaaagtagttttaataaaattcgCTGGGaattaatcaccatggcaataa
tttcaaaacgagacaagtgatgttcataatttatgaaaaggtctatttaa
aaagtatttctaatCTTTCTActagttttgcctgaaaatggaaAGACGTG
AAAAATTTTCAAGGTATAACGAGATATTTGGCCTCTAGATATTTTCCAAA
GTCCTGAGAGAATCAACCGAAAACTTTTCAGGACTTAAAGTGCGGATAAG
CACACTATAAAAACATTTCTGATTAtacctttaatttttttaacgacTTT
CCATTTCAAAGCAAATCTTAAGGTATTAAGGTATGTTTACACCTTTCTTA
ACACAATATTTTTAATTGGTCATATCTACGTCAAAAGTATTTTCTGACAA
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGGGGGGTGTTAgaaatttctcgaaaaattaac
aattcCGGGTGGGGGGGgtcgtttatttggcacctaagagtaatctTGAA
AAAGGGTTGGAATGAAGAAAAGAAAGGCACAAAATAGTTGGCGCTAAAAT
TAAGAGCTGATAGTAGTACGCGCTCATTATCATAACAACTACTTATCATT
TTTCTTTGTCACTTTTCTCAGGTAGCGTAGATGTAGGAGCCAAACAGCCA
TCGCCAGCAGCTGAACCATCCATTCCACAAGACCAAGCAGCATTCGACGT
GTACAATGCAAATTACAAATGTCCGGAATATTACAAATACGATGAATTCG
CGTTTTACGATATCGAAAACGATATGCAATCGAGTCGAATCGAGCAACCT
AGTGCCTTATAATAGTTGTTGttttaacaaagaaaattggtgttttttta
gattttgttgCTAACTTGGAACTTGTTCATACTATTTGAAATGTATATTA
TGGTGTTTGATTGTACAATAACTCAATAAATTGGATCTTATGTTCGCGTT
GAAATAATGTTTTGGGTAAATAGTAGTAGATTTTCAAACAATCTCTAGTG
ATAAACCTTGGAGATGGAAACACCATTTTGATTGATGGATGTCGCTGATT
GGTTCggtagaaatttatttttacattttagatGTATTAGGTGTTAGTCT
TTACAACGAAACTGGTAGTTTGATAGCAAACCTTTTTAAGATGAACCTAG
GTTACTTACTGTAGGTTATTAATATTTCCAAATTGTGGAAGATTGAATAG
ATGCTTATTTGAAAATTATAATGTAAATACATTACTTTTCTTAAGTAAAA
CTGAATATGTTATATGGCTGATTGCGTCGATTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060803-exon-scaffold_349-1491911889:783600..783651 | TCONS_00060803-exon-scaffold_349-1491911889:783600..783651 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1510915933:783600..783651 | TCONS_00060803-exon-scaffold_349-1510915933:783600..783651 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1575043694:783600..783651 | TCONS_00060803-exon-scaffold_349-1575043694:783600..783651 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1491911889:783718..783750 | TCONS_00060803-exon-scaffold_349-1491911889:783718..783750 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1510915933:783718..783750 | TCONS_00060803-exon-scaffold_349-1510915933:783718..783750 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1575043694:783718..783750 | TCONS_00060803-exon-scaffold_349-1575043694:783718..783750 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1491911889:783784..783868 | TCONS_00060803-exon-scaffold_349-1491911889:783784..783868 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1510915933:783784..783868 | TCONS_00060803-exon-scaffold_349-1510915933:783784..783868 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1575043694:783784..783868 | TCONS_00060803-exon-scaffold_349-1575043694:783784..783868 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1491911889:788221..788885 | TCONS_00060803-exon-scaffold_349-1491911889:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1510915933:788221..788885 | TCONS_00060803-exon-scaffold_349-1510915933:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060803-exon-scaffold_349-1575043694:788221..788885 | TCONS_00060803-exon-scaffold_349-1575043694:788221..788885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:783600..788885 + |
Blast
The following BLAST results are available for this feature:
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