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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060802 ID=TCONS_00060802|Name=TCONS_00060802|organism=Clytia hemisphaerica|type=transcript|length=869bp
CTGAAACAGTCGTCGATGAGGTAGCCCCTGAAGTAGAAGCAGTCGCTGAA
GATGCAGCCCCTGAAGTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGT
AGAAGCCGTCGTTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAGG
AGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGAGGCATCTGCTGGACCA
GAGAGTAGCGTAGATGTAGGAGCCAAACAGCCATCGCCAGCAGCTGAACC
ATCCATTCCACAAGACCAAGCAGCATTCGACGTGTACAATGCAAATTACA
AATGTCCGGAATATTACAAATACGATGAATTCGCGTTTTACGATATCGAA
AACGATATGCAATCGAGTCGAATCGAGCAACCTAGTGCCTTATAATAGTT
GTTGttttaacaaagaaaattggtgtttttttagattttgttgCTAACTT
GGAACTTGTTCATACTATTTGAAATGTATATTATGGTGTTTGATTGTACA
ATAACTCAATAAATTGGATCTTATGTTCGCGTTGAAATAATGTTTTGGGT
AAATAGTAGTAGATTTTCAAACAATCTCTAGTGATAAACCTTGGAGATGG
AAACACCATTTTGATTGATGGATGTCGCTGATTGGTTCggtagaaattta
tttttacattttagatGTATTAGGTGTTAGTCTTTACAACGAAACTGGTA
GTTTGATAGCAAACCTTTTTAAGATGAACCTAGGTTACTTACTGTAGGTT
ATTAATATTTCCAAATTGTGGAAGATTGAATAGATGCTTATTTGAAAATT
ATAATGTAAATACATTACTTTTCTTAAGTAAAACTGAATATGTTATATGG
CTGATTGCGTCGATTGATT Run BLAST on NCBI transcript from alignment at scaffold_349:783599..788885+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060802 ID=TCONS_00060802|Name=TCONS_00060802|organism=Clytia hemisphaerica|type=transcript|length=5287bp|location=Sequence derived from alignment at scaffold_349:783599..788885+ (Clytia hemisphaerica)
CTGAAACAGTCGTCGATGAGGTAGCCCCTGAAGTAGAAGCAGTCGCTGAA
GATGCAGCCCCTGAAGTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGT
AGAAGCCGTCGATGAGGAGGCAGCCCCTGAAGTAGAAGCCGTCGTTGAGG
AGGCAGCTCCTGAAGTAGAAGCAGTTGTTGAGGAGGCAGCCCCTGAAGTA
GAAGCAGTCGCTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGA
GGCATCTGCTGGACCAGAGAGTATGTTGTTAATGCTCTTAAATTTTTACG
CCCTTAATAGTTgtctttggtttgattttcCCAGCAATCTCGAGTTCGTT
ATCCTCTGATCTTTAATAAAGTGCGTCTGAACTTTGCTTTTCTTTCTCTT
CCCTTAGAAAAGGGCAAATGAATTGAACTTTAGTAACTGCTGCTTTCTTT
ATCTCCTGCGATTTTCTGAGTCCTTTTCCTAGCTCTACTTTTCCTATCCA
CTAATACTGAATACTGATAATAATTTTCTGTAATTTATTTGTCCTTTTCT
AGAACCAGAGCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaatt
tttaagtCGTCGGCAAACTCAGTTGACGGCGTAGTAGTGAAGTATGTCGT
GTTTTATCGTTATATTTAACCTTAGATTAGATTTTCAACTTGGTTGGACA
TGAATAATTCTAACGAGGGAAATCTGTATATTATTTCAACGGTTTCTTAT
ATCAACTTGGCTACTTCTTCTCTTGCAATTTTAAGGGTGTCAATATTGtc
tgttttttcttttcaaataacgTCATTCATCGTCAATTtacctttataaa
ccctggaccaagctatttCCACCatatttgatcggagtttttatgaaagt
ggtacccgcaaagaattTATAGTTAAGATTTTGTTTGAcaacaaacggcg
ctacatcacttGCGTGCAAgcgaaagtagatctagcgctctcgatgcggg
taccactttcaaaaatattccgaTCAAAATATGTTGGTTGGCCGGGACTG
AGAAACTGCCTCCGGGGTTTATGTAAAGCTCAATCAACTATGAATTATGA
ATCATTTCTAAGTTCAACGTATTCTGATAATGTAATATCAAGTCTCAAAT
TGAATGCAATCCCTCTGTATCTTTCAATGATCGGAGGGCTTCTTTGAGTC
AGTAAcgccatagtataagaaagccgcggctggaatgatgacgctattgt
ttttgtcgttAATGGATGTTTTATCTGTGTCTCCGTGATTTATAAGAACT
AAATCTAAGCTAGCAAAATCTTCAACCTGAAAAGTGTTTATAAAATTCAA
TTAAAGAATAATTACTTTTCAAGTCTTAGATTTTTCTCACTGCCCTCTAA
TTAGCTTGTTcgaagtatattcttataaattccagataaaattttaaaaa
tttaggaCCAAATAACGCACATTTTAAtacaagaactaattttcaaatgt
taaactttGAATGCTTGCCGTCATCTCAATACTGTTGATTTTCGAATGAA
GTTTTCAAGAATACTGCTTgaatattgattttttaataTCAGTAAGAATT
GTTCAAAATAATCAGGAAGGCACTTCGAAGCACttaattttcttcaagtt
cttaaagcacTGACATTCTGTTCGCTCTAATATTTTAAACCGAAactctt
ttcttttactttgatattatgaatgcgtgaattatcaagagatttgtgtt
tatgagcaaaattacgTCTTACGAGGGACTTTGTTAAAAGTCAGATTAAA
TTGACAATGGAAATTGTCATtgaaccataaaaaaattcgttcttacgaca
tagatagaacaacagaaattcaactgaactcattccagccgcggctttct
tatactatggtaacGCTTTTCAGGTAATTAACGCTCATTACCATATCTAG
GCTTTGCTTACTTTTAGGTGTACACACTttcacgagcagaaactttcgcg
aggtcgaaaaatcgtaACATTNTAGTAACTGCTGCTTTCTTTATCTCCTG
CGATTTTCTGAGTCCTTTTCCTAGCTCTACTTTTCCTATCCACTAATACT
GAATACTGATAATAATTTTCTGTAATTTATTTGTCCTTTTCTAGAACCAG
AGCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaatttttaagtC
GTCGGCAACCTCAGTTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATC
GTTATATTTAACCTTAGATTAGATTTTTAACTTGGACTTCAACAATTCGA
ACGGGGATATCTGTATATCGTTCCCATGATTTATATCAACTTGACTACTT
CTTTTCTTGCAGTGTTAAGGGTGTAAATATtgtctgtttttttcttttct
aataacGTCATTCATCGTCAATTATGAATACagacctttataaaccctgg
accaagctatttCCACCatatttgatcggagtttttatgaaagtggtacc
cgcaaGGAATTTATAGTTGAGATTTTGCCTGACTACTTCACTAGTATGCA
AtaaaaagtagatctagcgctctcgatgcggGTACCACTCTCAAAAATAT
TccgatcaaaatattttggttggcCGGGACTGAGAAACTGCCTCCGGGGT
TTATGTAAAGCTCAATCAACTATGAATTATGAATCATTTCTAAGTTGAAC
ATATTCTGAAAATTTAATATCAAGTCTCAAATTGAATGCATTCCCCCTGT
ATCTTTCAATGATCGGAGGGCTTCTTTGAGTCAGTAATGTTTTTCAGGTA
ATTAACACTCATTACCATATATAGGCTTTGCTTACttttaggtgtacaaa
ctttcacgagcagaaactttcgcgaggtcgaaaaatcgtaacatttactt
tcgcgaatttgacaaaaaatttttcgtgagcataaactttcgcaaatgaG
GCATATTTTTAGTAGAAAATTCAAGTTTTCGGTGCATAAAACCAGTGTTT
GACTTTCGCATAATATCTACACTAAATTTTATCCTTGTTATCATCAAGAC
GTTTACTTTCGCATAAAgggctaaaattcgcgaaaatcgtgaaagtttct
gctcgcgaaagtttgtacgcctaaagtagttgCCTGTCAACAGTAATATT
GTTAAAAGGTTTTTAGGTCGCTAATGATAAAGAATATTGTGTGAGGTATT
TCAAATGACCTGCAACTTATATAGCTCGCCTATAACACAAGACTAACTGT
GCCGTAGTGTACTCTTCAGACTTTTTCACTCAGGTTTATTTATCtcaata
ggccttttcataaattacgtcacgaacaacacttgcctcgtactcaaaca
attaccattgtgattatgtcccttgagacattaaatgattcttttatgaa
tagaaagtagttttaataaaattcgCTGGGaattaatcaccatggcaata
atttcaaaacgagacaagtgatgttcataatttatgaaaaggtctattta
aaaagtatttctaatCTTTCTActagttttgcctgaaaatggaaAGACGT
GAAAAATTTTCAAGGTATAACGAGATATTTGGCCTCTAGATATTTTCCAA
AGTCCTGAGAGAATCAACCGAAAACTTTTCAGGACTTAAAGTGCGGATAA
GCACACTATAAAAACATTTCTGATTAtacctttaatttttttaacgacTT
TCCATTTCAAAGCAAATCTTAAGGTATTAAGGTATGTTTACACCTTTCTT
AACACAATATTTTTAATTGGTCATATCTACGTCAAAAGTATTTTCTGACA
AAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGGGGGTGTTAgaaatttctcgaaaaattaa
caattcCGGGTGGGGGGGgtcgtttatttggcacctaagagtaatctTGA
AAAAGGGTTGGAATGAAGAAAAGAAAGGCACAAAATAGTTGGCGCTAAAA
TTAAGAGCTGATAGTAGTACGCGCTCATTATCATAACAACTACTTATCAT
TTTTCTTTGTCACTTTTCTCAGGTAGCGTAGATGTAGGAGCCAAACAGCC
ATCGCCAGCAGCTGAACCATCCATTCCACAAGACCAAGCAGCATTCGACG
TGTACAATGCAAATTACAAATGTCCGGAATATTACAAATACGATGAATTC
GCGTTTTACGATATCGAAAACGATATGCAATCGAGTCGAATCGAGCAACC
TAGTGCCTTATAATAGTTGTTGttttaacaaagaaaattggtgttttttt
agattttgttgCTAACTTGGAACTTGTTCATACTATTTGAAATGTATATT
ATGGTGTTTGATTGTACAATAACTCAATAAATTGGATCTTATGTTCGCGT
TGAAATAATGTTTTGGGTAAATAGTAGTAGATTTTCAAACAATCTCTAGT
GATAAACCTTGGAGATGGAAACACCATTTTGATTGATGGATGTCGCTGAT
TGGTTCggtagaaatttatttttacattttagatGTATTAGGTGTTAGTC
TTTACAACGAAACTGGTAGTTTGATAGCAAACCTTTTTAAGATGAACCTA
GGTTACTTACTGTAGGTTATTAATATTTCCAAATTGTGGAAGATTGAATA
GATGCTTATTTGAAAATTATAATGTAAATACATTACTTTTCTTAAGTAAA
ACTGAATATGTTATATGGCTGATTGCGTCGATTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060802-exon-scaffold_349-1491911889:783599..783684 | TCONS_00060802-exon-scaffold_349-1491911889:783599..783684 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1510915933:783599..783684 | TCONS_00060802-exon-scaffold_349-1510915933:783599..783684 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1575043694:783599..783684 | TCONS_00060802-exon-scaffold_349-1575043694:783599..783684 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1491911889:783718..783750 | TCONS_00060802-exon-scaffold_349-1491911889:783718..783750 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1510915933:783718..783750 | TCONS_00060802-exon-scaffold_349-1510915933:783718..783750 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1575043694:783718..783750 | TCONS_00060802-exon-scaffold_349-1575043694:783718..783750 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1491911889:783784..783868 | TCONS_00060802-exon-scaffold_349-1491911889:783784..783868 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1510915933:783784..783868 | TCONS_00060802-exon-scaffold_349-1510915933:783784..783868 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1575043694:783784..783868 | TCONS_00060802-exon-scaffold_349-1575043694:783784..783868 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1491911889:788221..788885 | TCONS_00060802-exon-scaffold_349-1491911889:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1510915933:788221..788885 | TCONS_00060802-exon-scaffold_349-1510915933:788221..788885 | Clytia hemisphaerica | exon |
| TCONS_00060802-exon-scaffold_349-1575043694:788221..788885 | TCONS_00060802-exon-scaffold_349-1575043694:788221..788885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:783599..788885 + |
Blast
The following BLAST results are available for this feature:
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