TCONS_00060800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060800
Unique NameTCONS_00060800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060800 ID=TCONS_00060800|Name=TCONS_00060800|organism=Clytia hemisphaerica|type=transcript|length=953bp
GCAGTCATCGAAGAGCCAGCTACTGAAACTGAAACAGTCGTCGATGAGGT
AGCCCCTGAAGTAGAAGCAGTCGCTGAAGATGCAGCCCCTGAAGTAGAAG
CAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCCGTCGTTGAGGAGGTA
GCTCCTGAGCCAGAGGTTGTAGCAGAAGAGGCATCTGCTGGACCAGAGAA
ACCAGAGCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaattttt
aagtCGTCGGCAACCTCAGTTGACGGCGTAGTAGTGAAGTAGCGTAGATG
TAGGAGCCAAACAGCCATCGCCAGCAGCTGAACCATCCATTCCACAAGAC
CAAGCAGCATTCGACGTGTACAATGCAAATTACAAATGTCCGGAATATTA
CAAATACGATGAATTCGCGTTTTACGATATCGAAAACGATATGCAATCGA
GTCGAATCGAGCAACCTAGTGCCTTATAATAGTTGTTGttttaacaaaga
aaattggtgtttttttagattttgttgCTAACTTGGAACTTGTTCATACT
ATTTGAAATGTATATTATGGTGTTTGATTGTACAATAACTCAATAAATTG
GATCTTATGTTCGCGTTGAAATAATGTTTTGGGTAAATAGTAGTAGATTT
TCAAACAATCTCTAGTGATAAACCTTGGAGATGGAAACACCATTTTGATT
GATGGATGTCGCTGATTGGTTCggtagaaatttatttttacattttagat
GTATTAGGTGTTAGTCTTTACAACGAAACTGGTAGTTTGATAGCAAACCT
TTTTAAGATGAACCTAGGTTACTTACTGTAGGTTATTAATATTTCCAAAT
TGTGGAAGATTGAATAGATGCTTATTTGAAAATTATAATGTAAATACATT
ACTTTTCTTAAGTAAAACTGAATATGTTATATGGCTGATTGCGTCGATTG
ATT
Run BLAST on NCBI

transcript from alignment at scaffold_349:783571..788885+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060800 ID=TCONS_00060800|Name=TCONS_00060800|organism=Clytia hemisphaerica|type=transcript|length=5315bp|location=Sequence derived from alignment at scaffold_349:783571..788885+ (Clytia hemisphaerica)
GCAGTCATCGAAGAGCCAGCTACTGAAACTGAAACAGTCGTCGATGAGGT
AGCCCCTGAAGTAGAAGCAGTCGCTGAAGATGCAGCCCCTGAAGTAGAAG
CAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCCGTCGATGAGGAGGCA
GCCCCTGAAGTAGAAGCCGTCGTTGAGGAGGCAGCTCCTGAAGTAGAAGC
AGTTGTTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAGGAGGTAG
CTCCTGAGCCAGAGGTTGTAGCAGAAGAGGCATCTGCTGGACCAGAGAGT
ATGTTGTTAATGCTCTTAAATTTTTACGCCCTTAATAGTTgtctttggtt
tgattttcCCAGCAATCTCGAGTTCGTTATCCTCTGATCTTTAATAAAGT
GCGTCTGAACTTTGCTTTTCTTTCTCTTCCCTTAGAAAAGGGCAAATGAA
TTGAACTTTAGTAACTGCTGCTTTCTTTATCTCCTGCGATTTTCTGAGTC
CTTTTCCTAGCTCTACTTTTCCTATCCACTAATACTGAATACTGATAATA
ATTTTCTGTAATTTATTTGTCCTTTTCTAGAACCAGAGCCGAAAACTCTT
TGGGAAAAGATTAAACGaatcttcaatttttaagtCGTCGGCAAACTCAG
TTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTAACCT
TAGATTAGATTTTCAACTTGGTTGGACATGAATAATTCTAACGAGGGAAA
TCTGTATATTATTTCAACGGTTTCTTATATCAACTTGGCTACTTCTTCTC
TTGCAATTTTAAGGGTGTCAATATTGtctgttttttcttttcaaataacg
TCATTCATCGTCAATTtacctttataaaccctggaccaagctatttCCAC
CatatttgatcggagtttttatgaaagtggtacccgcaaagaattTATAG
TTAAGATTTTGTTTGAcaacaaacggcgctacatcacttGCGTGCAAgcg
aaagtagatctagcgctctcgatgcgggtaccactttcaaaaatattccg
aTCAAAATATGTTGGTTGGCCGGGACTGAGAAACTGCCTCCGGGGTTTAT
GTAAAGCTCAATCAACTATGAATTATGAATCATTTCTAAGTTCAACGTAT
TCTGATAATGTAATATCAAGTCTCAAATTGAATGCAATCCCTCTGTATCT
TTCAATGATCGGAGGGCTTCTTTGAGTCAGTAAcgccatagtataagaaa
gccgcggctggaatgatgacgctattgtttttgtcgttAATGGATGTTTT
ATCTGTGTCTCCGTGATTTATAAGAACTAAATCTAAGCTAGCAAAATCTT
CAACCTGAAAAGTGTTTATAAAATTCAATTAAAGAATAATTACTTTTCAA
GTCTTAGATTTTTCTCACTGCCCTCTAATTAGCTTGTTcgaagtatattc
ttataaattccagataaaattttaaaaatttaggaCCAAATAACGCACAT
TTTAAtacaagaactaattttcaaatgttaaactttGAATGCTTGCCGTC
ATCTCAATACTGTTGATTTTCGAATGAAGTTTTCAAGAATACTGCTTgaa
tattgattttttaataTCAGTAAGAATTGTTCAAAATAATCAGGAAGGCA
CTTCGAAGCACttaattttcttcaagttcttaaagcacTGACATTCTGTT
CGCTCTAATATTTTAAACCGAAactcttttcttttactttgatattatga
atgcgtgaattatcaagagatttgtgtttatgagcaaaattacgTCTTAC
GAGGGACTTTGTTAAAAGTCAGATTAAATTGACAATGGAAATTGTCATtg
aaccataaaaaaattcgttcttacgacatagatagaacaacagaaattca
actgaactcattccagccgcggctttcttatactatggtaacGCTTTTCA
GGTAATTAACGCTCATTACCATATCTAGGCTTTGCTTACTTTTAGGTGTA
CACACTttcacgagcagaaactttcgcgaggtcgaaaaatcgtaACATTN
TAGTAACTGCTGCTTTCTTTATCTCCTGCGATTTTCTGAGTCCTTTTCCT
AGCTCTACTTTTCCTATCCACTAATACTGAATACTGATAATAATTTTCTG
TAATTTATTTGTCCTTTTCTAGAACCAGAGCCGAAAACTCTTTGGGAAAA
GATTAAACGaatcttcaatttttaagtCGTCGGCAACCTCAGTTGACGGC
GTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTAACCTTAGATTAG
ATTTTTAACTTGGACTTCAACAATTCGAACGGGGATATCTGTATATCGTT
CCCATGATTTATATCAACTTGACTACTTCTTTTCTTGCAGTGTTAAGGGT
GTAAATATtgtctgtttttttcttttctaataacGTCATTCATCGTCAAT
TATGAATACagacctttataaaccctggaccaagctatttCCACCatatt
tgatcggagtttttatgaaagtggtacccgcaaGGAATTTATAGTTGAGA
TTTTGCCTGACTACTTCACTAGTATGCAAtaaaaagtagatctagcgctc
tcgatgcggGTACCACTCTCAAAAATATTccgatcaaaatattttggttg
gcCGGGACTGAGAAACTGCCTCCGGGGTTTATGTAAAGCTCAATCAACTA
TGAATTATGAATCATTTCTAAGTTGAACATATTCTGAAAATTTAATATCA
AGTCTCAAATTGAATGCATTCCCCCTGTATCTTTCAATGATCGGAGGGCT
TCTTTGAGTCAGTAATGTTTTTCAGGTAATTAACACTCATTACCATATAT
AGGCTTTGCTTACttttaggtgtacaaactttcacgagcagaaactttcg
cgaggtcgaaaaatcgtaacatttactttcgcgaatttgacaaaaaattt
ttcgtgagcataaactttcgcaaatgaGGCATATTTTTAGTAGAAAATTC
AAGTTTTCGGTGCATAAAACCAGTGTTTGACTTTCGCATAATATCTACAC
TAAATTTTATCCTTGTTATCATCAAGACGTTTACTTTCGCATAAAgggct
aaaattcgcgaaaatcgtgaaagtttctgctcgcgaaagtttgtacgcct
aaagtagttgCCTGTCAACAGTAATATTGTTAAAAGGTTTTTAGGTCGCT
AATGATAAAGAATATTGTGTGAGGTATTTCAAATGACCTGCAACTTATAT
AGCTCGCCTATAACACAAGACTAACTGTGCCGTAGTGTACTCTTCAGACT
TTTTCACTCAGGTTTATTTATCtcaataggccttttcataaattacgtca
cgaacaacacttgcctcgtactcaaacaattaccattgtgattatgtccc
ttgagacattaaatgattcttttatgaatagaaagtagttttaataaaat
tcgCTGGGaattaatcaccatggcaataatttcaaaacgagacaagtgat
gttcataatttatgaaaaggtctatttaaaaagtatttctaatCTTTCTA
ctagttttgcctgaaaatggaaAGACGTGAAAAATTTTCAAGGTATAACG
AGATATTTGGCCTCTAGATATTTTCCAAAGTCCTGAGAGAATCAACCGAA
AACTTTTCAGGACTTAAAGTGCGGATAAGCACACTATAAAAACATTTCTG
ATTAtacctttaatttttttaacgacTTTCCATTTCAAAGCAAATCTTAA
GGTATTAAGGTATGTTTACACCTTTCTTAACACAATATTTTTAATTGGTC
ATATCTACGTCAAAAGTATTTTCTGACAAAAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGG
GGGTGTTAgaaatttctcgaaaaattaacaattcCGGGTGGGGGGGgtcg
tttatttggcacctaagagtaatctTGAAAAAGGGTTGGAATGAAGAAAA
GAAAGGCACAAAATAGTTGGCGCTAAAATTAAGAGCTGATAGTAGTACGC
GCTCATTATCATAACAACTACTTATCATTTTTCTTTGTCACTTTTCTCAG
GTAGCGTAGATGTAGGAGCCAAACAGCCATCGCCAGCAGCTGAACCATCC
ATTCCACAAGACCAAGCAGCATTCGACGTGTACAATGCAAATTACAAATG
TCCGGAATATTACAAATACGATGAATTCGCGTTTTACGATATCGAAAACG
ATATGCAATCGAGTCGAATCGAGCAACCTAGTGCCTTATAATAGTTGTTG
ttttaacaaagaaaattggtgtttttttagattttgttgCTAACTTGGAA
CTTGTTCATACTATTTGAAATGTATATTATGGTGTTTGATTGTACAATAA
CTCAATAAATTGGATCTTATGTTCGCGTTGAAATAATGTTTTGGGTAAAT
AGTAGTAGATTTTCAAACAATCTCTAGTGATAAACCTTGGAGATGGAAAC
ACCATTTTGATTGATGGATGTCGCTGATTGGTTCggtagaaatttatttt
tacattttagatGTATTAGGTGTTAGTCTTTACAACGAAACTGGTAGTTT
GATAGCAAACCTTTTTAAGATGAACCTAGGTTACTTACTGTAGGTTATTA
ATATTTCCAAATTGTGGAAGATTGAATAGATGCTTATTTGAAAATTATAA
TGTAAATACATTACTTTTCTTAAGTAAAACTGAATATGTTATATGGCTGA
TTGCGTCGATTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038194XLOC_038194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060800-exon-scaffold_349-1491911889:783571..783684TCONS_00060800-exon-scaffold_349-1491911889:783571..783684Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1510915933:783571..783684TCONS_00060800-exon-scaffold_349-1510915933:783571..783684Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1575043694:783571..783684TCONS_00060800-exon-scaffold_349-1575043694:783571..783684Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1491911889:783718..783750TCONS_00060800-exon-scaffold_349-1491911889:783718..783750Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1510915933:783718..783750TCONS_00060800-exon-scaffold_349-1510915933:783718..783750Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1575043694:783718..783750TCONS_00060800-exon-scaffold_349-1575043694:783718..783750Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1491911889:783817..783868TCONS_00060800-exon-scaffold_349-1491911889:783817..783868Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1510915933:783817..783868TCONS_00060800-exon-scaffold_349-1510915933:783817..783868Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1575043694:783817..783868TCONS_00060800-exon-scaffold_349-1575043694:783817..783868Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1491911889:785743..785831TCONS_00060800-exon-scaffold_349-1491911889:785743..785831Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1510915933:785743..785831TCONS_00060800-exon-scaffold_349-1510915933:785743..785831Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1575043694:785743..785831TCONS_00060800-exon-scaffold_349-1575043694:785743..785831Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1491911889:788221..788885TCONS_00060800-exon-scaffold_349-1491911889:788221..788885Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1510915933:788221..788885TCONS_00060800-exon-scaffold_349-1510915933:788221..788885Clytia hemisphaericaexon
TCONS_00060800-exon-scaffold_349-1575043694:788221..788885TCONS_00060800-exon-scaffold_349-1575043694:788221..788885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:783571..788885 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.86198e-06	0	0	0	5.69634e-06	0	0	0	1.29746e-09	4.26043e-09	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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